NP-MRD: Showing NP-Card for Tridecanenitrile (NP0016308)

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Record Information

Version

2.0

Created at

2021-01-06 01:19:24 UTC

Updated at

2021-07-15 17:22:20 UTC

NP-MRD ID

NP0016308

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Tridecanenitrile

Provided By

NPAtlas

Description

Tridecanenitrile is found in Pseudomonas and Pseudomonas veronii. Based on a literature review very few articles have been published on TRIDECANENITRILE.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117273D          

 39 38  0  0  0  0            999 V2000
    5.4493   -0.1523   -1.6538 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4240    0.3343   -0.2392 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1274    0.9669    0.1469 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9584    0.0354    0.0238 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6933    0.7583    0.4338 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5358   -0.2141    0.2964 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7399    0.4981    0.7046 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8759   -0.4980    0.5568 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1367    0.2038    0.9595 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3001   -0.7069    0.8381 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.5439   -1.2462   -0.5046 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8497   -0.2635   -1.5551 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8101    0.6537   -1.8831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9678    1.3957   -2.1904 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4627    0.7045   -2.3595 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5938   -0.7855   -1.9106 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3852   -0.7226   -1.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2106    1.1415   -0.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7597   -0.4472    0.4766 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2079    1.2342    1.2384 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9593    1.8609   -0.4723 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8300   -0.2516   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1050   -0.8444    0.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7669    1.1502    1.4661 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4799    1.6211   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6726   -1.1310    0.8850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4762   -0.5210   -0.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7069    0.8039    1.7611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9718    1.3492    0.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9236   -0.8986   -0.4490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6838   -1.3905    1.2262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2696    1.1246    0.4108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0282    0.5537    2.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2010   -0.1825    1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1345   -1.6175    1.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6433   -1.8453   -0.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3287   -2.0831   -0.4795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8038    0.2588   -1.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1785   -0.8471   -2.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
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  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
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 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
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  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  2 18  1  0  0  0  0
  2 19  1  0  0  0  0
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 12 38  1  0  0  0  0
 12 39  1  0  0  0  0
M  END

     RDKit          3D

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    5.4240    0.3343   -0.2392 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1274    0.9669    0.1469 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9584    0.0354    0.0238 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6933    0.7583    0.4338 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5358   -0.2141    0.2964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7399    0.4981    0.7046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8759   -0.4980    0.5568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1367    0.2038    0.9595 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3001   -0.7069    0.8381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5439   -1.2462   -0.5046 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8101    0.6537   -1.8831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9678    1.3957   -2.1904 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4627    0.7045   -2.3595 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5938   -0.7855   -1.9106 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3852   -0.7226   -1.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2106    1.1415   -0.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7597   -0.4472    0.4766 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2079    1.2342    1.2384 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9593    1.8609   -0.4723 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8300   -0.2516   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1050   -0.8444    0.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7669    1.1502    1.4661 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4799    1.6211   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6726   -1.1310    0.8850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4762   -0.5210   -0.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.9718    1.3492    0.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9236   -0.8986   -0.4490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6838   -1.3905    1.2262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2696    1.1246    0.4108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0282    0.5537    2.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2010   -0.1825    1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1345   -1.6175    1.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6433   -1.8453   -0.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3287   -2.0831   -0.4795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8038    0.2588   -1.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1785   -0.8471   -2.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
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 12 13  1  0
 13 14  3  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
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 12 39  1  0
M  END


  Mrv1652306242117273D          

 39 38  0  0  0  0            999 V2000
    5.4493   -0.1523   -1.6538 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4240    0.3343   -0.2392 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1274    0.9669    0.1469 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9584    0.0354    0.0238 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6933    0.7583    0.4338 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5358   -0.2141    0.2964 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7399    0.4981    0.7046 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8759   -0.4980    0.5568 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1367    0.2038    0.9595 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3001   -0.7069    0.8381 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.5439   -1.2462   -0.5046 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8497   -0.2635   -1.5551 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8101    0.6537   -1.8831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9678    1.3957   -2.1904 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4627    0.7045   -2.3595 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5938   -0.7855   -1.9106 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3852   -0.7226   -1.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2106    1.1415   -0.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7597   -0.4472    0.4766 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2079    1.2342    1.2384 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9593    1.8609   -0.4723 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8300   -0.2516   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1050   -0.8444    0.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7669    1.1502    1.4661 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4799    1.6211   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.2696    1.1246    0.4108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0282    0.5537    2.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2010   -0.1825    1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1345   -1.6175    1.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6433   -1.8453   -0.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3287   -2.0831   -0.4795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8038    0.2588   -1.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1785   -0.8471   -2.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  3  0  0  0  0
  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  2 18  1  0  0  0  0
  2 19  1  0  0  0  0
  3 20  1  0  0  0  0
  3 21  1  0  0  0  0
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  4 23  1  0  0  0  0
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  8 30  1  0  0  0  0
  8 31  1  0  0  0  0
  9 32  1  0  0  0  0
  9 33  1  0  0  0  0
 10 34  1  0  0  0  0
 10 35  1  0  0  0  0
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 11 37  1  0  0  0  0
 12 38  1  0  0  0  0
 12 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0016308

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C#N

> <INCHI_IDENTIFIER>
InChI=1S/C13H25N/c1-2-3-4-5-6-7-8-9-10-11-12-13-14/h2-12H2,1H3

> <INCHI_KEY>
WKJHMKQSIBMURP-UHFFFAOYSA-N

> <FORMULA>
C13H25N

> <MOLECULAR_WEIGHT>
195.35

> <EXACT_MASS>
195.198699809

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
25.978178880035376

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
tridecanenitrile

> <ALOGPS_LOGP>
5.53

> <JCHEM_LOGP>
4.980825649333333

> <ALOGPS_LOGS>
-4.19

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
23.79

> <JCHEM_REFRACTIVITY>
62.2599

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.25e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
tridecanenitrile

> <JCHEM_VEBER_RULE>
1

$$$$

     RDKit          3D

 39 38  0  0  0  0  0  0  0  0999 V2000
    5.4493   -0.1523   -1.6538 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4240    0.3343   -0.2392 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1274    0.9669    0.1469 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9584    0.0354    0.0238 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6933    0.7583    0.4338 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5358   -0.2141    0.2964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7399    0.4981    0.7046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8759   -0.4980    0.5568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1367    0.2038    0.9595 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3001   -0.7069    0.8381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5439   -1.2462   -0.5046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8497   -0.2635   -1.5551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8101    0.6537   -1.8831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9678    1.3957   -2.1904 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4627    0.7045   -2.3595 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5938   -0.7855   -1.9106 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3852   -0.7226   -1.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2106    1.1415   -0.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7597   -0.4472    0.4766 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2079    1.2342    1.2384 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9593    1.8609   -0.4723 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8300   -0.2516   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1050   -0.8444    0.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7669    1.1502    1.4661 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4799    1.6211   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6726   -1.1310    0.8850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4762   -0.5210   -0.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7069    0.8039    1.7611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9718    1.3492    0.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9236   -0.8986   -0.4490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6838   -1.3905    1.2262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2696    1.1246    0.4108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0282    0.5537    2.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2010   -0.1825    1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1345   -1.6175    1.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6433   -1.8453   -0.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3287   -2.0831   -0.4795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8038    0.2588   -1.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1785   -0.8471   -2.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  3  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       5.449  -0.152  -1.654  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.424   0.334  -0.239  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.127   0.967   0.147  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.958   0.035   0.024  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.693   0.758   0.434  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.536  -0.214   0.296  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.740   0.498   0.705  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.876  -0.498   0.557  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.137   0.204   0.960  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.300  -0.707   0.838  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.544  -1.246  -0.505  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.850  -0.264  -1.555  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.810   0.654  -1.883  0.00  0.00           C+0
HETATM   14  N   UNK     0      -2.968   1.396  -2.190  0.00  0.00           N+0
HETATM   15  H   UNK     0       5.463   0.705  -2.360  0.00  0.00           H+0
HETATM   16  H   UNK     0       4.594  -0.786  -1.911  0.00  0.00           H+0
HETATM   17  H   UNK     0       6.385  -0.723  -1.822  0.00  0.00           H+0
HETATM   18  H   UNK     0       6.211   1.141  -0.165  0.00  0.00           H+0
HETATM   19  H   UNK     0       5.760  -0.447   0.477  0.00  0.00           H+0
HETATM   20  H   UNK     0       4.208   1.234   1.238  0.00  0.00           H+0
HETATM   21  H   UNK     0       3.959   1.861  -0.472  0.00  0.00           H+0
HETATM   22  H   UNK     0       2.830  -0.252  -1.036  0.00  0.00           H+0
HETATM   23  H   UNK     0       3.105  -0.844   0.674  0.00  0.00           H+0
HETATM   24  H   UNK     0       1.767   1.150   1.466  0.00  0.00           H+0
HETATM   25  H   UNK     0       1.480   1.621  -0.228  0.00  0.00           H+0
HETATM   26  H   UNK     0       0.673  -1.131   0.885  0.00  0.00           H+0
HETATM   27  H   UNK     0       0.476  -0.521  -0.767  0.00  0.00           H+0
HETATM   28  H   UNK     0      -0.707   0.804   1.761  0.00  0.00           H+0
HETATM   29  H   UNK     0      -0.972   1.349   0.063  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.924  -0.899  -0.449  0.00  0.00           H+0
HETATM   31  H   UNK     0      -1.684  -1.391   1.226  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.270   1.125   0.411  0.00  0.00           H+0
HETATM   33  H   UNK     0      -3.028   0.554   2.053  0.00  0.00           H+0
HETATM   34  H   UNK     0      -5.201  -0.183   1.270  0.00  0.00           H+0
HETATM   35  H   UNK     0      -4.135  -1.617   1.520  0.00  0.00           H+0
HETATM   36  H   UNK     0      -3.643  -1.845  -0.892  0.00  0.00           H+0
HETATM   37  H   UNK     0      -5.329  -2.083  -0.480  0.00  0.00           H+0
HETATM   38  H   UNK     0      -5.804   0.259  -1.248  0.00  0.00           H+0
HETATM   39  H   UNK     0      -5.178  -0.847  -2.473  0.00  0.00           H+0
CONECT    1    2   15   16   17                                             
CONECT    2    1    3   18   19                                             
CONECT    3    2    4   20   21                                             
CONECT    4    3    5   22   23                                             
CONECT    5    4    6   24   25                                             
CONECT    6    5    7   26   27                                             
CONECT    7    6    8   28   29                                             
CONECT    8    7    9   30   31                                             
CONECT    9    8   10   32   33                                             
CONECT   10    9   11   34   35                                             
CONECT   11   10   12   36   37                                             
CONECT   12   11   13   38   39                                             
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15    1                                                            
CONECT   16    1                                                            
CONECT   17    1                                                            
CONECT   18    2                                                            
CONECT   19    2                                                            
CONECT   20    3                                                            
CONECT   21    3                                                            
CONECT   22    4                                                            
CONECT   23    4                                                            
CONECT   24    5                                                            
CONECT   25    5                                                            
CONECT   26    6                                                            
CONECT   27    6                                                            
CONECT   28    7                                                            
CONECT   29    7                                                            
CONECT   30    8                                                            
CONECT   31    8                                                            
CONECT   32    9                                                            
CONECT   33    9                                                            
CONECT   34   10                                                            
CONECT   35   10                                                            
CONECT   36   11                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   12                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   76    0
END

RDKit          3D

39 38  0  0  0  0  0  0  0  0999 V2000
    5.4493   -0.1523   -1.6538 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4240    0.3343   -0.2392 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1274    0.9669    0.1469 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9584    0.0354    0.0238 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6933    0.7583    0.4338 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5358   -0.2141    0.2964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7399    0.4981    0.7046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8759   -0.4980    0.5568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1367    0.2038    0.9595 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3001   -0.7069    0.8381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5439   -1.2462   -0.5046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8497   -0.2635   -1.5551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8101    0.6537   -1.8831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9678    1.3957   -2.1904 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4627    0.7045   -2.3595 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5938   -0.7855   -1.9106 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3852   -0.7226   -1.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2106    1.1415   -0.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7597   -0.4472    0.4766 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2079    1.2342    1.2384 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9593    1.8609   -0.4723 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8300   -0.2516   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1050   -0.8444    0.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7669    1.1502    1.4661 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4799    1.6211   -0.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6726   -1.1310    0.8850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4762   -0.5210   -0.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7069    0.8039    1.7611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9718    1.3492    0.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9236   -0.8986   -0.4490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6838   -1.3905    1.2262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2696    1.1246    0.4108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0282    0.5537    2.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2010   -0.1825    1.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1345   -1.6175    1.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6433   -1.8453   -0.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3287   -2.0831   -0.4795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8038    0.2588   -1.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1785   -0.8471   -2.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  3  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  2 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₃H₂₅N

Average Mass

195.3500 Da

Monoisotopic Mass

195.19870 Da

IUPAC Name

tridecanenitrile

Traditional Name

tridecanenitrile

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCC#N

InChI Identifier

InChI=1S/C13H25N/c1-2-3-4-5-6-7-8-9-10-11-12-13-14/h2-12H2,1H3

InChI Key

WKJHMKQSIBMURP-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pseudomonas	NPAtlas	28276609
Pseudomonas veronii	LOTUS Database	35616633

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as nitriles. These are compounds having the structure RC#N; thus C-substituted derivatives of hydrocyanic acid, HC#N.

Kingdom

Organic compounds

Super Class

Organic nitrogen compounds

Class

Organonitrogen compounds

Sub Class

Organic cyanides

Direct Parent

Nitriles

Alternative Parents

Substituents

Nitrile
Carbonitrile
Organopnictogen compound
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.53	ALOGPS
logP	4.98	ChemAxon
logS	-4.2	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	23.79 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	62.26 m³·mol⁻¹	ChemAxon
Polarizability	25.98 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA024360

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

11884

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12390

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Tridecanenitrile (NP0016308)

MOL for NP0016308 (Tridecanenitrile)

3D MOL for NP0016308 (Tridecanenitrile)

3D SDF for NP0016308 (Tridecanenitrile)

3D-SDF for NP0016308 (Tridecanenitrile)

PDB for NP0016308 (Tridecanenitrile)

3D PDB for NP0016308 (Tridecanenitrile)

SMILES for NP0016308 (Tridecanenitrile)

INCHI for NP0016308 (Tridecanenitrile)

Structure for NP0016308 (Tridecanenitrile)

3D Structure for NP0016308 (Tridecanenitrile)