Np mrd loader

Record Information
Version1.0
Created at2021-01-06 01:17:31 UTC
Updated at2021-07-15 17:22:14 UTC
NP-MRD IDNP0016268
Secondary Accession NumbersNone
Natural Product Identification
Common NameLP2006
Provided ByNPAtlasNPAtlas Logo
Description LP2006 is found in Nocardiopsis alba. It was first documented in 2017 (PMID: 28244986). Based on a literature review very few articles have been published on LP2006.
Structure
Thumb
Synonyms
ValueSource
(4R,7S,10S,13S,16R)-16-{[(2S)-2-{[(2S)-2-{[(2S)-2-{[(2S)-2-({[(3S,6S,12S,15S,23S,28as)-12-benzyl-23-(3-carbamimidamidopropyl)-1,4,7,10,13,18,21-heptahydroxy-3-[(C-hydroxycarbonimidoyl)methyl]-6-[(1H-indol-3-yl)methyl]-24-oxo-3H,6H,9H,12H,15H,16H,17H,20H,23H,24H,26H,27H,28H,28ah-pyrrolo[1,2-g]1,4,7,10,13,16,19,22-octaazacyclohexacosan-15-yl](hydroxy)methylidene}amino)-1-hydroxy-3-(C-hydroxycarbonimidoyl)propylidene]amino}-3-carboxy-1-hydroxypropylidene]amino}-1-hydroxy-3-(1H-indol-3-yl)propylidene]amino}-1,3-dihydroxypropylidene]amino}-10-(3-carbamimidamidopropyl)-6,9,12,15-tetrahydroxy-7,13-bis(propan-2-yl)-1,2-dithia-5,8,11,14-tetraazacycloheptadeca-5,8,11,14-tetraene-4-carboxylateGenerator
Chemical FormulaC88H121N27O24S2
Average Mass2005.2200 Da
Monoisotopic Mass2003.85192 Da
IUPAC Name(4R,7S,10S,13S,16R)-16-[(2S)-2-[(2S)-2-[(2S)-2-[(2S)-2-{[(3S,6S,12S,15S,23S,28aS)-12-benzyl-23-(3-carbamimidamidopropyl)-3-(carbamoylmethyl)-6-[(1H-indol-3-yl)methyl]-1,4,7,10,13,18,21,24-octaoxo-octacosahydropyrrolo[1,2-g]1,4,7,10,13,16,19,22-octaazacyclohexacosan-15-yl]formamido}-3-carbamoylpropanamido]-3-carboxypropanamido]-3-(1H-indol-3-yl)propanamido]-3-hydroxypropanamido]-10-(3-carbamimidamidopropyl)-6,9,12,15-tetraoxo-7,13-bis(propan-2-yl)-1,2-dithia-5,8,11,14-tetraazacycloheptadecane-4-carboxylic acid
Traditional Name(4R,7S,10S,13S,16R)-16-[(2S)-2-[(2S)-2-[(2S)-2-[(2S)-2-{[(3S,6S,12S,15S,23S,28aS)-12-benzyl-23-(3-carbamimidamidopropyl)-3-(carbamoylmethyl)-6-(1H-indol-3-ylmethyl)-1,4,7,10,13,18,21,24-octaoxo-icosahydropyrrolo[1,2-g]1,4,7,10,13,16,19,22-octaazacyclohexacosan-15-yl]formamido}-3-carbamoylpropanamido]-3-carboxypropanamido]-3-(1H-indol-3-yl)propanamido]-3-hydroxypropanamido]-10-(3-carbamimidamidopropyl)-7,13-diisopropyl-6,9,12,15-tetraoxo-1,2-dithia-5,8,11,14-tetraazacycloheptadecane-4-carboxylic acid
CAS Registry NumberNot Available
SMILES
CC(C)[C@@H]1NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@@H](NC(=O)[C@H](CSSC[C@H](NC1=O)C(O)=O)NC(=O)[C@H](CO)NC(=O)[C@H](CC1=CNC2=CC=CC=C12)NC(=O)[C@H](CC(O)=O)NC(=O)[C@H](CC(N)=O)NC(=O)[C@@H]1CCC(=O)NCC(=O)N[C@@H](CCCNC(N)=N)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC2=CNC3=CC=CC=C23)C(=O)NCC(=O)N[C@@H](CC2=CC=CC=C2)C(=O)N1)C(C)C
InChI Identifier
InChI=1S/C88H121N27O24S2/c1-42(2)70-83(135)104-51(21-12-26-95-87(91)92)74(126)113-71(43(3)4)84(136)112-62(86(138)139)41-141-140-40-61(81(133)114-70)111-80(132)60(39-116)110-76(128)56(31-46-36-98-50-20-11-9-18-48(46)50)106-79(131)59(34-69(122)123)108-77(129)57(32-64(89)117)107-73(125)52-24-25-66(119)99-37-67(120)101-53(22-13-27-96-88(93)94)85(137)115-28-14-23-63(115)82(134)109-58(33-65(90)118)78(130)105-55(30-45-35-97-49-19-10-8-17-47(45)49)72(124)100-38-68(121)102-54(75(127)103-52)29-44-15-6-5-7-16-44/h5-11,15-20,35-36,42-43,51-63,70-71,97-98,116H,12-14,21-34,37-41H2,1-4H3,(H2,89,117)(H2,90,118)(H,99,119)(H,100,124)(H,101,120)(H,102,121)(H,103,127)(H,104,135)(H,105,130)(H,106,131)(H,107,125)(H,108,129)(H,109,134)(H,110,128)(H,111,132)(H,112,136)(H,113,126)(H,114,133)(H,122,123)(H,138,139)(H4,91,92,95)(H4,93,94,96)/t51-,52-,53-,54-,55-,56-,57-,58-,59-,60-,61-,62-,63-,70-,71-/m0/s1
InChI KeyDGLXWTNAXWDXII-QUIRKDHJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Nocardiopsis albaNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-13ChemAxon
pKa (Strongest Acidic)2.99ChemAxon
pKa (Strongest Basic)12.31ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count30ChemAxon
Hydrogen Donor Count29ChemAxon
Polar Surface Area822.3 ŲChemAxon
Rotatable Bond Count34ChemAxon
Refractivity521.59 m³·mol⁻¹ChemAxon
Polarizability203.68 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA028411
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound124080863
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Tietz JI, Schwalen CJ, Patel PS, Maxson T, Blair PM, Tai HC, Zakai UI, Mitchell DA: A new genome-mining tool redefines the lasso peptide biosynthetic landscape. Nat Chem Biol. 2017 May;13(5):470-478. doi: 10.1038/nchembio.2319. Epub 2017 Feb 28. [PubMed:28244986 ]