NP-MRD: Showing NP-Card for Spiroviolene (NP0016132)

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Record Information

Version

2.0

Created at

2021-01-06 01:11:49 UTC

Updated at

2024-12-22 00:02:15 UTC

NP-MRD ID

NP0016132

Natural Product DOI

https://doi.org/10.57994/3530

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Spiroviolene

Provided By

NPAtlas

Description

Spiroviolene is found in Streptomyces and Streptomyces violens. Spiroviolene was first documented in 2017 (PMID: 28146322). Based on a literature review very few articles have been published on (1'R,2R,2'S,5R,8'R)-2,5,8',11',11'-pentamethylspiro[cyclopentane-1,5'-tricyclo[6.3.0.0²,⁶]Undecan]-6'-ene.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117263D          

 52 55  0  0  0  0            999 V2000
    2.7687    2.0231   -1.1373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8353    1.1883    0.0917 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1410    0.3909    0.0270 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8079   -0.6506   -1.0101 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3675   -1.0279   -0.6510 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4307   -2.3503    0.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8268    0.0849    0.1669 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6502   -0.2681    1.6343 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1929    0.0947    1.9601 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4626   -0.2233    0.6399 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4761    0.4731   -0.3073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2228    1.1628   -1.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6633    1.0044   -0.9474 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4227    2.3107   -1.0460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3319    0.0110   -1.8643 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3137   -0.7607   -1.0100 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9097   -0.5508    0.4246 C   0  0  1  0  0  0  0  0  0  0  0  0
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    3.7816    2.5095   -1.2592 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.9784    1.0165   -0.3137 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3228   -0.1044    0.9908 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4641   -1.5325   -0.9757 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.2062   -2.3737    0.8618 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3404    0.3076    2.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.1858   -0.4834    2.8024 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.9280    1.2462    1.2146 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
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  4  5  1  0  0  0  0
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  5  7  1  0  0  0  0
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  9 10  1  0  0  0  0
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  9 35  1  0  0  0  0
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 10 37  1  6  0  0  0
 12 38  1  0  0  0  0
 14 39  1  0  0  0  0
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 18 46  1  0  0  0  0
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 18 48  1  0  0  0  0
 19 49  1  0  0  0  0
 19 50  1  0  0  0  0
 19 51  1  0  0  0  0
 20 52  1  1  0  0  0
M  END

     RDKit          3D

 52 55  0  0  0  0  0  0  0  0999 V2000
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    1.6502   -0.2681    1.6343 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4626   -0.2233    0.6399 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.0938   -0.0729    1.2523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5153   -1.9044    0.9827 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5970    1.4672   -2.0611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0734    2.8603   -0.9558 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8865    1.8270    0.9787 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9784    1.0165   -0.3137 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242117263D          

 52 55  0  0  0  0            999 V2000
    2.7687    2.0231   -1.1373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8353    1.1883    0.0917 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.3595   -0.4547   -1.1890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2293   -1.8287   -1.3283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2151    1.0358    1.1849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0169   -0.5193    0.8520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9586   -0.4276    2.2906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9493   -1.8467    1.9137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4849   -2.4233    1.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0520   -2.5598    0.2084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    1.2462    1.2146 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 17 20  1  0  0  0  0
  7  2  1  0  0  0  0
 20 10  1  0  0  0  0
 11  7  1  0  0  0  0
 20 13  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  2 24  1  1  0  0  0
  3 25  1  0  0  0  0
  3 26  1  0  0  0  0
  4 27  1  0  0  0  0
  4 28  1  0  0  0  0
  5 29  1  6  0  0  0
  6 30  1  0  0  0  0
  6 31  1  0  0  0  0
  6 32  1  0  0  0  0
  8 33  1  0  0  0  0
  8 34  1  0  0  0  0
  9 35  1  0  0  0  0
  9 36  1  0  0  0  0
 10 37  1  6  0  0  0
 12 38  1  0  0  0  0
 14 39  1  0  0  0  0
 14 40  1  0  0  0  0
 14 41  1  0  0  0  0
 15 42  1  0  0  0  0
 15 43  1  0  0  0  0
 16 44  1  0  0  0  0
 16 45  1  0  0  0  0
 18 46  1  0  0  0  0
 18 47  1  0  0  0  0
 18 48  1  0  0  0  0
 19 49  1  0  0  0  0
 19 50  1  0  0  0  0
 19 51  1  0  0  0  0
 20 52  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0016132

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C1=C2[C@@]([H])(C([H])([H])C([H])([H])C22[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@@]2([H])C([H])([H])[H])[C@@]2([H])[C@]1(C([H])([H])[H])C([H])([H])C([H])([H])C2(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H32/c1-13-6-7-14(2)20(13)9-8-15-16(20)12-19(5)11-10-18(3,4)17(15)19/h12-15,17H,6-11H2,1-5H3/t13-,14-,15-,17-,19-/m1/s1

> <INCHI_KEY>
RCIADIYJKCSKCC-SDAMIPCISA-N

> <FORMULA>
C20H32

> <MOLECULAR_WEIGHT>
272.476

> <EXACT_MASS>
272.25040103

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
34.512345140993574

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1'R,2R,2'S,5R,8'R)-2,5,8',11',11'-pentamethylspiro[cyclopentane-1,5'-tricyclo[6.3.0.0^{2,6}]undecan]-6'-ene

> <ALOGPS_LOGP>
6.07

> <JCHEM_LOGP>
5.400654926333333

> <ALOGPS_LOGS>
-6.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
86.6665

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.22e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,2R,2'S,5R,8'R)-2,5,8',11',11'-pentamethylspiro[cyclopentane-1,5'-tricyclo[6.3.0.0^{2,6}]undecan]-6'-ene

> <JCHEM_VEBER_RULE>
1

$$$$

     RDKit          3D

 52 55  0  0  0  0  0  0  0  0999 V2000
    2.7687    2.0231   -1.1373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8353    1.1883    0.0917 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1410    0.3909    0.0270 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8079   -0.6506   -1.0101 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3675   -1.0279   -0.6510 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4307   -2.3503    0.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8268    0.0849    0.1669 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6502   -0.2681    1.6343 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1929    0.0947    1.9601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4626   -0.2233    0.6399 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4761    0.4731   -0.3073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2228    1.1628   -1.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6633    1.0044   -0.9474 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4227    2.3107   -1.0460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3319    0.0110   -1.8643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3137   -0.7607   -1.0100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9097   -0.5508    0.4246 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0938   -0.0729    1.2523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5153   -1.9044    0.9827 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7977    0.4454    0.4534 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7816    2.5095   -1.2592 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5970    1.4672   -2.0611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0734    2.8603   -0.9558 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8865    1.8270    0.9787 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9784    1.0165   -0.3137 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3228   -0.1044    0.9908 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4641   -1.5325   -0.9757 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7950   -0.1846   -2.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7628   -1.1827   -1.5783 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8089   -3.0944   -0.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4555   -2.7383    0.3793 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2062   -2.3737    0.8618 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3404    0.3076    2.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7424   -1.3393    1.8356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1858   -0.4834    2.8024 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1233    1.2028    2.1644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4731   -1.3013    0.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2172    1.7555   -1.9975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0352    2.9783   -1.8278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4175    2.8302   -0.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4916    2.0916   -1.3339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5771   -0.6318   -2.3440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9451    0.5176   -2.6566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3595   -0.4547   -1.1890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2293   -1.8287   -1.3283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2151    1.0358    1.1849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0169   -0.5193    0.8520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9586   -0.4276    2.2906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9493   -1.8467    1.9137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4849   -2.4233    1.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0520   -2.5598    0.2084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    1.2462    1.2146 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  1
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  1
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  1
 17 19  1  0
 17 20  1  0
  7  2  1  0
 20 10  1  0
 11  7  1  0
 20 13  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  1
  3 25  1  0
  3 26  1  0
  4 27  1  0
  4 28  1  0
  5 29  1  6
  6 30  1  0
  6 31  1  0
  6 32  1  0
  8 33  1  0
  8 34  1  0
  9 35  1  0
  9 36  1  0
 10 37  1  6
 12 38  1  0
 14 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 15 43  1  0
 16 44  1  0
 16 45  1  0
 18 46  1  0
 18 47  1  0
 18 48  1  0
 19 49  1  0
 19 50  1  0
 19 51  1  0
 20 52  1  1
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       2.769   2.023  -1.137  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.835   1.188   0.092  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.141   0.391   0.027  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.808  -0.651  -1.010  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.368  -1.028  -0.651  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.431  -2.350   0.055  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.827   0.085   0.167  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.650  -0.268   1.634  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.193   0.095   1.960  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.463  -0.223   0.640  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.476   0.473  -0.307  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.223   1.163  -1.200  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.663   1.004  -0.947  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.423   2.311  -1.046  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.332   0.011  -1.864  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.314  -0.761  -1.010  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.910  -0.551   0.425  0.00  0.00           C+0
HETATM   18  C   UNK     0      -4.094  -0.073   1.252  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.515  -1.904   0.983  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.798   0.445   0.453  0.00  0.00           C+0
HETATM   21  H   UNK     0       3.782   2.510  -1.259  0.00  0.00           H+0
HETATM   22  H   UNK     0       2.597   1.467  -2.061  0.00  0.00           H+0
HETATM   23  H   UNK     0       2.073   2.860  -0.956  0.00  0.00           H+0
HETATM   24  H   UNK     0       2.886   1.827   0.979  0.00  0.00           H+0
HETATM   25  H   UNK     0       4.978   1.016  -0.314  0.00  0.00           H+0
HETATM   26  H   UNK     0       4.323  -0.104   0.991  0.00  0.00           H+0
HETATM   27  H   UNK     0       4.464  -1.533  -0.976  0.00  0.00           H+0
HETATM   28  H   UNK     0       3.795  -0.185  -2.029  0.00  0.00           H+0
HETATM   29  H   UNK     0       1.763  -1.183  -1.578  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.809  -3.094  -0.707  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.456  -2.738   0.379  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.206  -2.374   0.862  0.00  0.00           H+0
HETATM   33  H   UNK     0       2.340   0.308   2.290  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.742  -1.339   1.836  0.00  0.00           H+0
HETATM   35  H   UNK     0      -0.186  -0.483   2.802  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.123   1.203   2.164  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.473  -1.301   0.501  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.217   1.756  -1.998  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.035   2.978  -1.828  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.418   2.830  -0.072  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.492   2.092  -1.334  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.577  -0.632  -2.344  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.945   0.518  -2.657  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.359  -0.455  -1.189  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.229  -1.829  -1.328  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.215   1.036   1.185  0.00  0.00           H+0
HETATM   47  H   UNK     0      -5.017  -0.519   0.852  0.00  0.00           H+0
HETATM   48  H   UNK     0      -3.959  -0.428   2.291  0.00  0.00           H+0
HETATM   49  H   UNK     0      -1.949  -1.847   1.914  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.485  -2.423   1.242  0.00  0.00           H+0
HETATM   51  H   UNK     0      -2.052  -2.560   0.208  0.00  0.00           H+0
HETATM   52  H   UNK     0      -1.928   1.246   1.215  0.00  0.00           H+0
CONECT    1    2   21   22   23                                             
CONECT    2    1    3    7   24                                             
CONECT    3    2    4   25   26                                             
CONECT    4    3    5   27   28                                             
CONECT    5    4    6    7   29                                             
CONECT    6    5   30   31   32                                             
CONECT    7    5    8    2   11                                             
CONECT    8    7    9   33   34                                             
CONECT    9    8   10   35   36                                             
CONECT   10    9   11   20   37                                             
CONECT   11   10   12    7                                                  
CONECT   12   11   13   38                                                  
CONECT   13   12   14   15   20                                             
CONECT   14   13   39   40   41                                             
CONECT   15   13   16   42   43                                             
CONECT   16   15   17   44   45                                             
CONECT   17   16   18   19   20                                             
CONECT   18   17   46   47   48                                             
CONECT   19   17   49   50   51                                             
CONECT   20   17   10   13   52                                             
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    2                                                            
CONECT   25    3                                                            
CONECT   26    3                                                            
CONECT   27    4                                                            
CONECT   28    4                                                            
CONECT   29    5                                                            
CONECT   30    6                                                            
CONECT   31    6                                                            
CONECT   32    6                                                            
CONECT   33    8                                                            
CONECT   34    8                                                            
CONECT   35    9                                                            
CONECT   36    9                                                            
CONECT   37   10                                                            
CONECT   38   12                                                            
CONECT   39   14                                                            
CONECT   40   14                                                            
CONECT   41   14                                                            
CONECT   42   15                                                            
CONECT   43   15                                                            
CONECT   44   16                                                            
CONECT   45   16                                                            
CONECT   46   18                                                            
CONECT   47   18                                                            
CONECT   48   18                                                            
CONECT   49   19                                                            
CONECT   50   19                                                            
CONECT   51   19                                                            
CONECT   52   20                                                            
MASTER        0    0    0    0    0    0    0    0   52    0  110    0
END

RDKit          3D

52 55  0  0  0  0  0  0  0  0999 V2000
    2.7687    2.0231   -1.1373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8353    1.1883    0.0917 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1410    0.3909    0.0270 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8079   -0.6506   -1.0101 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3675   -1.0279   -0.6510 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4307   -2.3503    0.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8268    0.0849    0.1669 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6502   -0.2681    1.6343 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1929    0.0947    1.9601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4626   -0.2233    0.6399 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4761    0.4731   -0.3073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2228    1.1628   -1.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6633    1.0044   -0.9474 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4227    2.3107   -1.0460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3319    0.0110   -1.8643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3137   -0.7607   -1.0100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9097   -0.5508    0.4246 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0938   -0.0729    1.2523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5153   -1.9044    0.9827 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7977    0.4454    0.4534 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7816    2.5095   -1.2592 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5970    1.4672   -2.0611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0734    2.8603   -0.9558 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8865    1.8270    0.9787 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9784    1.0165   -0.3137 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3228   -0.1044    0.9908 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4641   -1.5325   -0.9757 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7950   -0.1846   -2.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7628   -1.1827   -1.5783 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8089   -3.0944   -0.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4555   -2.7383    0.3793 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2062   -2.3737    0.8618 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3404    0.3076    2.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7424   -1.3393    1.8356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1858   -0.4834    2.8024 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1233    1.2028    2.1644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4731   -1.3013    0.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2172    1.7555   -1.9975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0352    2.9783   -1.8278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4175    2.8302   -0.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4916    2.0916   -1.3339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5771   -0.6318   -2.3440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9451    0.5176   -2.6566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3595   -0.4547   -1.1890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2293   -1.8287   -1.3283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2151    1.0358    1.1849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0169   -0.5193    0.8520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9586   -0.4276    2.2906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9493   -1.8467    1.9137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4849   -2.4233    1.2415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0520   -2.5598    0.2084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    1.2462    1.2146 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  1
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  1
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  1
 17 19  1  0
 17 20  1  0
  7  2  1  0
 20 10  1  0
 11  7  1  0
 20 13  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  1
  3 25  1  0
  3 26  1  0
  4 27  1  0
  4 28  1  0
  5 29  1  6
  6 30  1  0
  6 31  1  0
  6 32  1  0
  8 33  1  0
  8 34  1  0
  9 35  1  0
  9 36  1  0
 10 37  1  6
 12 38  1  0
 14 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 15 43  1  0
 16 44  1  0
 16 45  1  0
 18 46  1  0
 18 47  1  0
 18 48  1  0
 19 49  1  0
 19 50  1  0
 19 51  1  0
 20 52  1  1
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂

Average Mass

272.4760 Da

Monoisotopic Mass

272.25040 Da

IUPAC Name

(1'R,2R,2'S,5R,8'R)-2,5,8',11',11'-pentamethylspiro[cyclopentane-1,5'-tricyclo[6.3.0.0^{2,6}]undecan]-6'-ene

Traditional Name

(1'R,2R,2'S,5R,8'R)-2,5,8',11',11'-pentamethylspiro[cyclopentane-1,5'-tricyclo[6.3.0.0^{2,6}]undecan]-6'-ene

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC[C@@H](C)C11CC[C@H]2[C@@H]3C(C)(C)CC[C@]3(C)C=C12

InChI Identifier

InChI=1S/C20H32/c1-13-6-7-14(2)20(13)9-8-15-16(20)12-19(5)11-10-18(3,4)17(15)19/h12-15,17H,6-11H2,1-5H3/t13-,14-,15-,17-,19-/m1/s1

InChI Key

RCIADIYJKCSKCC-SDAMIPCISA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-20	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-20	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	28146322
Streptomyces sp. 130		Not Available
Streptomyces violens	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.07	ALOGPS
logP	5.4	ChemAxon
logS	-6.4	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	86.67 m³·mol⁻¹	ChemAxon
Polarizability	34.51 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA024348

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

64808224

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

129320305

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Rabe P, Rinkel J, Dolja E, Schmitz T, Nubbemeyer B, Luu TH, Dickschat JS: Mechanistic Investigations of Two Bacterial Diterpene Cyclases: Spiroviolene Synthase and Tsukubadiene Synthase. Angew Chem Int Ed Engl. 2017 Mar 1;56(10):2776-2779. doi: 10.1002/anie.201612439. Epub 2017 Jan 31. [PubMed:28146322 ]

Showing NP-Card for Spiroviolene (NP0016132)

MOL for NP0016132 (Spiroviolene)

3D MOL for NP0016132 (Spiroviolene)

3D SDF for NP0016132 (Spiroviolene)

3D-SDF for NP0016132 (Spiroviolene)

PDB for NP0016132 (Spiroviolene)

3D PDB for NP0016132 (Spiroviolene)

SMILES for NP0016132 (Spiroviolene)

INCHI for NP0016132 (Spiroviolene)

Structure for NP0016132 (Spiroviolene)

3D Structure for NP0016132 (Spiroviolene)