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Record Information
Version1.0
Created at2021-01-06 00:26:25 UTC
Updated at2021-07-15 17:19:29 UTC
NP-MRD IDNP0015265
Secondary Accession NumbersNone
Natural Product Identification
Common NamePhomopsin E
Provided ByNPAtlasNPAtlas Logo
Description Phomopsin E is found in Phomopsis and Phomopsis leptostromiformis. It was first documented in 2016 (PMID: 26979951). Based on a literature review very few articles have been published on (2E)-2-{[(2E)-2-({[(2S)-1-[(3R,4S,7S,10S,11S)-14-chloro-10-(dimethylamino)-3-ethyl-6,9,11,15-tetrahydroxy-3-methyl-7-(prop-1-en-2-yl)-2-oxa-5,8-diazabicyclo[10.3.1]Hexadeca-1(16),5,8,12,14-pentaene-4-carbonyl]-2,5-dihydro-1H-pyrrol-2-yl](hydroxy)methylidene}amino)-1-hydroxy-3-methylpent-2-en-1-ylidene]amino}but-2-enedioic acid (PMID: 28613872) (PMID: 26658962).
Structure
Thumb
Synonyms
ValueSource
(2E)-2-{[(2E)-2-({[(2S)-1-[(3R,4S,7S,10S,11S)-14-chloro-10-(dimethylamino)-3-ethyl-6,9,11,15-tetrahydroxy-3-methyl-7-(prop-1-en-2-yl)-2-oxa-5,8-diazabicyclo[10.3.1]hexadeca-1(16),5,8,12,14-pentaene-4-carbonyl]-2,5-dihydro-1H-pyrrol-2-yl](hydroxy)methylidene}amino)-1-hydroxy-3-methylpent-2-en-1-ylidene]amino}but-2-enedioateGenerator
Chemical FormulaC37H47ClN6O12
Average Mass803.2600 Da
Monoisotopic Mass802.29405 Da
IUPAC Name(2E)-2-[(2E)-2-{[(2S)-1-[(3R,4S,10S,11S)-14-chloro-10-(dimethylamino)-3-ethyl-11,15-dihydroxy-3-methyl-6,9-dioxo-7-(prop-1-en-2-yl)-2-oxa-5,8-diazabicyclo[10.3.1]hexadeca-1(16),12,14-triene-4-carbonyl]-2,5-dihydro-1H-pyrrol-2-yl]formamido}-3-methylpent-2-enamido]but-2-enedioic acid
Traditional Name(2E)-2-[(2E)-2-{[(2S)-1-[(3R,4S,10S,11S)-14-chloro-10-(dimethylamino)-3-ethyl-11,15-dihydroxy-3-methyl-6,9-dioxo-7-(prop-1-en-2-yl)-2-oxa-5,8-diazabicyclo[10.3.1]hexadeca-1(16),12,14-triene-4-carbonyl]-2,5-dihydropyrrol-2-yl]formamido}-3-methylpent-2-enamido]but-2-enedioic acid
CAS Registry NumberNot Available
SMILES
CC\C(C)=C(\NC(=O)[C@@H]1C=CCN1C(=O)[C@H]1NC(=O)[C@@H](NC(=O)[C@H]([C@@H](O)C2=CC(Cl)=C(O)C(O[C@]1(C)CC)=C2)N(C)C)C(C)=C)C(=O)N\C(=C\C(O)=O)C(O)=O
InChI Identifier
InChI=1S/C37H47ClN6O12/c1-9-18(5)26(33(51)39-21(36(54)55)16-24(45)46)41-31(49)22-12-11-13-44(22)35(53)30-37(6,10-2)56-23-15-19(14-20(38)29(23)48)28(47)27(43(7)8)34(52)40-25(17(3)4)32(50)42-30/h11-12,14-16,22,25,27-28,30,47-48H,3,9-10,13H2,1-2,4-8H3,(H,39,51)(H,40,52)(H,41,49)(H,42,50)(H,45,46)(H,54,55)/b21-16+,26-18+/t22-,25-,27-,28-,30+,37+/m0/s1
InChI KeyYKJILBFISDHBLQ-GSJAERIGSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
PhomopsisNPAtlas
Phomopsis leptostromiformisLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.41ALOGPS
logP-2.4ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)1.98ChemAxon
pKa (Strongest Basic)6.55ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area264.24 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity202.9 m³·mol⁻¹ChemAxon
Polarizability82.21 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA024667
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound145720573
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ding W, Liu WQ, Jia Y, Li Y, van der Donk WA, Zhang Q: Biosynthetic investigation of phomopsins reveals a widespread pathway for ribosomal natural products in Ascomycetes. Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3521-6. doi: 10.1073/pnas.1522907113. Epub 2016 Mar 15. [PubMed:26979951 ]
  2. Schloss S, Hackl T, Herz C, Lamy E, Koch M, Rohn S, Maul R: Detection of a Toxic Methylated Derivative of Phomopsin A Produced by the Legume-Infesting Fungus Diaporthe toxica. J Nat Prod. 2017 Jun 23;80(6):1930-1934. doi: 10.1021/acs.jnatprod.6b00662. Epub 2017 Jun 14. [PubMed:28613872 ]
  3. Yasuno Y, Nishimura A, Yasukawa Y, Karita Y, Ohfune Y, Shinada T: The stereoselective construction of E- and Z-Delta-Ile from E-dehydroamino acid ester: the synthesis of the phomopsin A tripeptide side chain. Chem Commun (Camb). 2016 Jan 25;52(7):1478-81. doi: 10.1039/c5cc08458j. Epub 2015 Dec 10. [PubMed:26658962 ]