NP-MRD: Showing NP-Card for Karnamicin D1 (NP0014936)

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Record Information

Version

2.0

Created at

2021-01-05 23:58:17 UTC

Updated at

2021-07-15 17:18:35 UTC

NP-MRD ID

NP0014936

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Karnamicin D1

Provided By

NPAtlas

Description

Karnamicin D1 is found in Saccharothrix. Based on a literature review very few articles have been published on Karnamicin D1.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117123D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242117123D          

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   -4.1174   -3.1362    0.3112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3210   -3.8978   -0.8457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5634   -3.8614   -1.2191 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
  8 17  2  0  0  0  0
  4 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 19 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 25  3  1  0  0  0  0
 17  5  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
  6 31  1  0  0  0  0
  9 32  1  0  0  0  0
  9 33  1  0  0  0  0
 10 34  1  0  0  0  0
 10 35  1  0  0  0  0
 11 36  1  0  0  0  0
 11 37  1  0  0  0  0
 12 38  1  0  0  0  0
 12 39  1  0  0  0  0
 14 40  1  0  0  0  0
 14 41  1  0  0  0  0
 14 42  1  0  0  0  0
 15 43  1  0  0  0  0
 15 44  1  0  0  0  0
 15 45  1  0  0  0  0
 16 46  1  0  0  0  0
 21 47  1  0  0  0  0
 21 48  1  0  0  0  0
 24 49  1  0  0  0  0
 27 50  1  0  0  0  0
 27 51  1  0  0  0  0
 27 52  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0014936

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(OC([H])([H])[H])C(OC([H])([H])[H])=C(N=C1C(=O)N([H])[H])C1=C([H])SC(=N1)C([H])([H])C([H])([H])C([H])([H])C([H])([H])C(O[H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C18H25N3O5S/c1-18(2,24)8-6-5-7-11-20-10(9-27-11)12-15(25-3)16(26-4)14(22)13(21-12)17(19)23/h9,22,24H,5-8H2,1-4H3,(H2,19,23)

> <INCHI_KEY>
CLFWTCAKLHHGGO-UHFFFAOYSA-N

> <FORMULA>
C18H25N3O5S

> <MOLECULAR_WEIGHT>
395.47

> <EXACT_MASS>
395.151492091

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
42.35942701061549

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-hydroxy-6-[2-(5-hydroxy-5-methylhexyl)-1,3-thiazol-4-yl]-4,5-dimethoxypyridine-2-carboxamide

> <ALOGPS_LOGP>
2.52

> <JCHEM_LOGP>
2.518654598666666

> <ALOGPS_LOGS>
-4.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.980475253196364

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.14244007828542

> <JCHEM_PKA_STRONGEST_BASIC>
-0.041202770461395644

> <JCHEM_POLAR_SURFACE_AREA>
127.79000000000002

> <JCHEM_REFRACTIVITY>
100.97169999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.49e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-hydroxy-6-[2-(5-hydroxy-5-methylhexyl)-1,3-thiazol-4-yl]-4,5-dimethoxypyridine-2-carboxamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 52 53  0  0  0  0  0  0  0  0999 V2000
   -1.7048   -0.5008   -2.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0511   -0.8221   -1.0768 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2077   -0.1964   -0.5814 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0620    1.0279    0.0438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7386    1.6816    0.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6261    2.8990    0.8263 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0551    3.1836    0.7364 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5055    1.7511   -0.0840 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8845    1.2993   -0.5193 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5375    0.4865    0.5746 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9005    0.0758    0.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6487   -0.7521    1.0959 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9904   -1.1260    0.5293 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8004    0.0950    0.2007 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8785   -1.9855   -0.7028 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6723   -1.8453    1.5261 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6483    1.1371   -0.2433 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1773    1.5859    0.4976 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4121    1.0332    0.3823 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5225    1.7742    0.9319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3266    3.0355    1.5695 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6830    1.3505    0.8741 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5593   -0.1769   -0.2353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7405   -0.8265   -0.4094 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4081   -0.8168   -0.7374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4944   -2.0339   -1.3673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4042   -3.2833   -0.7506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6112   -0.5295   -2.5746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1694   -1.2625   -3.0822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0372    0.5299   -2.6856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4437    3.5029    1.2617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4407    2.2192   -0.7502 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8201    0.7055   -1.4519 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9544   -0.4394    0.7408 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5932    1.0710    1.5005 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7358   -0.5481   -0.8343 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4504    0.9979   -0.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8334   -0.0834    1.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0824   -1.6190    1.4327 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4402    0.4556   -0.8056 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8556   -0.1754    0.0581 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7043    0.8927    0.9565 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6062   -1.3382   -1.5687 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1822   -2.8311   -0.5898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9068   -2.3641   -0.9344 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6527   -2.8329    1.3363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7504    3.7637    1.0935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7348    3.2678    2.4968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6169   -0.5377   -0.1318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1174   -3.1362    0.3112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3210   -3.8978   -0.8457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5634   -3.8614   -1.2191 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 13 16  1  0
  8 17  2  0
  4 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  2  0
 19 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  1  0
 25  3  1  0
 17  5  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  6 31  1  0
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
 14 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 15 45  1  0
 16 46  1  0
 21 47  1  0
 21 48  1  0
 24 49  1  0
 27 50  1  0
 27 51  1  0
 27 52  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.705  -0.501  -2.424  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.051  -0.822  -1.077  0.00  0.00           O+0
HETATM    3  C   UNK     0      -3.208  -0.196  -0.581  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.062   1.028   0.044  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.739   1.682   0.200  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.626   2.899   0.826  0.00  0.00           C+0
HETATM    7  S   UNK     0       0.055   3.184   0.736  0.00  0.00           S+0
HETATM    8  C   UNK     0       0.505   1.751  -0.084  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.885   1.299  -0.519  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.538   0.487   0.575  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.901   0.076   0.067  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.649  -0.752   1.096  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.990  -1.126   0.529  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.800   0.095   0.201  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.878  -1.986  -0.703  0.00  0.00           C+0
HETATM   16  O   UNK     0       6.672  -1.845   1.526  0.00  0.00           O+0
HETATM   17  N   UNK     0      -0.648   1.137  -0.243  0.00  0.00           N+0
HETATM   18  N   UNK     0      -4.177   1.586   0.498  0.00  0.00           N+0
HETATM   19  C   UNK     0      -5.412   1.033   0.382  0.00  0.00           C+0
HETATM   20  C   UNK     0      -6.523   1.774   0.932  0.00  0.00           C+0
HETATM   21  N   UNK     0      -6.327   3.035   1.569  0.00  0.00           N+0
HETATM   22  O   UNK     0      -7.683   1.351   0.874  0.00  0.00           O+0
HETATM   23  C   UNK     0      -5.559  -0.177  -0.235  0.00  0.00           C+0
HETATM   24  O   UNK     0      -6.740  -0.827  -0.409  0.00  0.00           O+0
HETATM   25  C   UNK     0      -4.408  -0.817  -0.737  0.00  0.00           C+0
HETATM   26  O   UNK     0      -4.494  -2.034  -1.367  0.00  0.00           O+0
HETATM   27  C   UNK     0      -4.404  -3.283  -0.751  0.00  0.00           C+0
HETATM   28  H   UNK     0      -0.611  -0.530  -2.575  0.00  0.00           H+0
HETATM   29  H   UNK     0      -2.169  -1.262  -3.082  0.00  0.00           H+0
HETATM   30  H   UNK     0      -2.037   0.530  -2.686  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.444   3.503   1.262  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.441   2.219  -0.750  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.820   0.706  -1.452  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.954  -0.439   0.741  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.593   1.071   1.500  0.00  0.00           H+0
HETATM   36  H   UNK     0       3.736  -0.548  -0.834  0.00  0.00           H+0
HETATM   37  H   UNK     0       4.450   0.998  -0.167  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.833  -0.083   1.962  0.00  0.00           H+0
HETATM   39  H   UNK     0       4.082  -1.619   1.433  0.00  0.00           H+0
HETATM   40  H   UNK     0       6.440   0.456  -0.806  0.00  0.00           H+0
HETATM   41  H   UNK     0       7.856  -0.175   0.058  0.00  0.00           H+0
HETATM   42  H   UNK     0       6.704   0.893   0.957  0.00  0.00           H+0
HETATM   43  H   UNK     0       5.606  -1.338  -1.569  0.00  0.00           H+0
HETATM   44  H   UNK     0       5.182  -2.831  -0.590  0.00  0.00           H+0
HETATM   45  H   UNK     0       6.907  -2.364  -0.934  0.00  0.00           H+0
HETATM   46  H   UNK     0       6.653  -2.833   1.336  0.00  0.00           H+0
HETATM   47  H   UNK     0      -5.750   3.764   1.093  0.00  0.00           H+0
HETATM   48  H   UNK     0      -6.735   3.268   2.497  0.00  0.00           H+0
HETATM   49  H   UNK     0      -7.617  -0.538  -0.132  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.117  -3.136   0.311  0.00  0.00           H+0
HETATM   51  H   UNK     0      -5.321  -3.898  -0.846  0.00  0.00           H+0
HETATM   52  H   UNK     0      -3.563  -3.861  -1.219  0.00  0.00           H+0
CONECT    1    2   28   29   30                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   25                                                  
CONECT    4    3    5   18                                                  
CONECT    5    4    6   17                                                  
CONECT    6    5    7   31                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   17                                                  
CONECT    9    8   10   32   33                                             
CONECT   10    9   11   34   35                                             
CONECT   11   10   12   36   37                                             
CONECT   12   11   13   38   39                                             
CONECT   13   12   14   15   16                                             
CONECT   14   13   40   41   42                                             
CONECT   15   13   43   44   45                                             
CONECT   16   13   46                                                       
CONECT   17    8    5                                                       
CONECT   18    4   19                                                       
CONECT   19   18   20   23                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20   47   48                                                  
CONECT   22   20                                                            
CONECT   23   19   24   25                                                  
CONECT   24   23   49                                                       
CONECT   25   23   26    3                                                  
CONECT   26   25   27                                                       
CONECT   27   26   50   51   52                                             
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    6                                                            
CONECT   32    9                                                            
CONECT   33    9                                                            
CONECT   34   10                                                            
CONECT   35   10                                                            
CONECT   36   11                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   12                                                            
CONECT   40   14                                                            
CONECT   41   14                                                            
CONECT   42   14                                                            
CONECT   43   15                                                            
CONECT   44   15                                                            
CONECT   45   15                                                            
CONECT   46   16                                                            
CONECT   47   21                                                            
CONECT   48   21                                                            
CONECT   49   24                                                            
CONECT   50   27                                                            
CONECT   51   27                                                            
CONECT   52   27                                                            
MASTER        0    0    0    0    0    0    0    0   52    0  106    0
END

RDKit          3D

52 53  0  0  0  0  0  0  0  0999 V2000
   -1.7048   -0.5008   -2.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0511   -0.8221   -1.0768 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2077   -0.1964   -0.5814 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0620    1.0279    0.0438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7386    1.6816    0.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6261    2.8990    0.8263 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0551    3.1836    0.7364 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5055    1.7511   -0.0840 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8845    1.2993   -0.5193 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5375    0.4865    0.5746 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9005    0.0758    0.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6487   -0.7521    1.0959 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9904   -1.1260    0.5293 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8004    0.0950    0.2007 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.6723   -1.8453    1.5261 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.1773    1.5859    0.4976 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4121    1.0332    0.3823 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5225    1.7742    0.9319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3266    3.0355    1.5695 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6830    1.3505    0.8741 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5593   -0.1769   -0.2353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7405   -0.8265   -0.4094 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4081   -0.8168   -0.7374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4944   -2.0339   -1.3673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4042   -3.2833   -0.7506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6112   -0.5295   -2.5746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1694   -1.2625   -3.0822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0372    0.5299   -2.6856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4437    3.5029    1.2617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4407    2.2192   -0.7502 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8201    0.7055   -1.4519 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9544   -0.4394    0.7408 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5932    1.0710    1.5005 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7358   -0.5481   -0.8343 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4504    0.9979   -0.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8334   -0.0834    1.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0824   -1.6190    1.4327 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4402    0.4556   -0.8056 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8556   -0.1754    0.0581 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7043    0.8927    0.9565 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6062   -1.3382   -1.5687 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1822   -2.8311   -0.5898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9068   -2.3641   -0.9344 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6527   -2.8329    1.3363 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.7348    3.2678    2.4968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6169   -0.5377   -0.1318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1174   -3.1362    0.3112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3210   -3.8978   -0.8457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5634   -3.8614   -1.2191 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
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 25  3  1  0
 17  5  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  6 31  1  0
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 27 52  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
3-Hydroxy-6-[2-(5-hydroxy-5-methylhexyl)-1,3-thiazol-4-yl]-4,5-dimethoxypyridine-2-carboximidate	Generator

Chemical Formula

C₁₈H₂₅N₃O₅S

Average Mass

395.4700 Da

Monoisotopic Mass

395.15149 Da

IUPAC Name

3-hydroxy-6-[2-(5-hydroxy-5-methylhexyl)-1,3-thiazol-4-yl]-4,5-dimethoxypyridine-2-carboxamide

Traditional Name

3-hydroxy-6-[2-(5-hydroxy-5-methylhexyl)-1,3-thiazol-4-yl]-4,5-dimethoxypyridine-2-carboxamide

CAS Registry Number

Not Available

SMILES

COC1=C(OC)C(=NC(C(N)=O)=C1O)C1=CSC(CCCCC(C)(C)O)=N1

InChI Identifier

InChI=1S/C18H25N3O5S/c1-18(2,24)8-6-5-7-11-20-10(9-27-11)12-15(25-3)16(26-4)14(22)13(21-12)17(19)23/h9,22,24H,5-8H2,1-4H3,(H2,19,23)

InChI Key

CLFWTCAKLHHGGO-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Saccharothrix	NPAtlas	2661511

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.52	ALOGPS
logP	2.52	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	8.14	ChemAxon
pKa (Strongest Basic)	-0.041	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	127.79 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	100.97 m³·mol⁻¹	ChemAxon
Polarizability	42.36 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA018491

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

68023357

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14837689

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Karnamicin D1 (NP0014936)

MOL for NP0014936 (Karnamicin D1)

3D MOL for NP0014936 (Karnamicin D1)

3D SDF for NP0014936 (Karnamicin D1)

3D-SDF for NP0014936 (Karnamicin D1)

PDB for NP0014936 (Karnamicin D1)

3D PDB for NP0014936 (Karnamicin D1)

SMILES for NP0014936 (Karnamicin D1)

INCHI for NP0014936 (Karnamicin D1)

Structure for NP0014936 (Karnamicin D1)

3D Structure for NP0014936 (Karnamicin D1)