Np mrd loader

Record Information
Version1.0
Created at2021-01-05 23:43:03 UTC
Updated at2021-07-15 17:17:41 UTC
NP-MRD IDNP0014591
Secondary Accession NumbersNone
Natural Product Identification
Common NameHormaomycin B
Provided ByNPAtlasNPAtlas Logo
Description Hormaomycin B is found in Streptomyces sp. It was first documented in 2015 (PMID: 26287218). Based on a literature review very few articles have been published on (2S)-N-[(3R,4R,7S,10R,13S,16S,20R,21aS)-7-benzyl-16-[(2S)-butan-2-yl]-5,8,11,14-tetrahydroxy-3-methyl-10-{[(1R,2R)-2-nitrocyclopropyl]methyl}-1,17-dioxo-13-[(1R)-1-phenylethyl]-20-[(1Z)-prop-1-en-1-yl]-1H,3H,4H,7H,10H,13H,16H,17H,19H,20H,21H,21aH-pyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]-2-[(5-chloro-1-hydroxy-1H-pyrrol-2-yl)formamido]-3-[(1S,2S)-2-nitrocyclopropyl]propanimidic acid.
Structure
Thumb
Synonyms
ValueSource
(2S)-N-[(3R,4R,7S,10R,13S,16S,20R,21AS)-7-benzyl-16-[(2S)-butan-2-yl]-5,8,11,14-tetrahydroxy-3-methyl-10-{[(1R,2R)-2-nitrocyclopropyl]methyl}-1,17-dioxo-13-[(1R)-1-phenylethyl]-20-[(1Z)-prop-1-en-1-yl]-1H,3H,4H,7H,10H,13H,16H,17H,19H,20H,21H,21ah-pyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]-2-[(5-chloro-1-hydroxy-1H-pyrrol-2-yl)formamido]-3-[(1S,2S)-2-nitrocyclopropyl]propanimidateGenerator
Chemical FormulaC54H67ClN10O14
Average Mass1115.6400 Da
Monoisotopic Mass1114.45267 Da
IUPAC Name{[(1S,2S)-2-[(2S)-2-{[(3R,4R,7S,10R,16S,20R,21aS)-7-benzyl-16-[(2S)-butan-2-yl]-3-methyl-10-{[(1R,2R)-2-nitrocyclopropyl]methyl}-1,5,8,11,14,17-hexaoxo-13-[(1R)-1-phenylethyl]-20-[(1Z)-prop-1-en-1-yl]-icosahydropyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]carbamoyl}-2-[(5-chloro-1-hydroxy-1H-pyrrol-2-yl)formamido]ethyl]cyclopropyl]nitro}-lambda1-oxidanyl
Traditional Name[(1S,2S)-2-[(2S)-2-{[(3R,4R,7S,10R,16S,20R,21aS)-7-benzyl-16-[(2S)-butan-2-yl]-3-methyl-10-{[(1R,2R)-2-nitrocyclopropyl]methyl}-1,5,8,11,14,17-hexaoxo-13-[(1R)-1-phenylethyl]-20-[(1Z)-prop-1-en-1-yl]-tetradecahydropyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]carbamoyl}-2-[(5-chloro-1-hydroxypyrrol-2-yl)formamido]ethyl]cyclopropylnitro]-lambda1-oxidanyl
CAS Registry NumberNot Available
SMILES
CC[C@H](C)[C@@H]1NC(=O)[C@@H](NC(=O)[C@@H](C[C@@H]2C[C@H]2[N+]([O-])=O)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](NC(=O)[C@H](C[C@H]2C[C@@H]2[N+]([O-])=O)NC(=O)C2=CC=C(Cl)N2O)[C@@H](C)OC(=O)[C@@H]2C[C@@H](CN2C1=O)\C=C/C)[C@H](C)C1=CC=CC=C1
InChI Identifier
InChI=1S/C54H67ClN10O14/c1-6-14-32-22-42-54(73)79-30(5)46(61-49(68)38(24-35-26-41(35)65(77)78)57-50(69)39-19-20-43(55)63(39)74)52(71)58-36(21-31-15-10-8-11-16-31)47(66)56-37(23-34-25-40(34)64(75)76)48(67)60-45(29(4)33-17-12-9-13-18-33)51(70)59-44(28(3)7-2)53(72)62(42)27-32/h6,8-20,28-30,32,34-38,40-42,44-46,74H,7,21-27H2,1-5H3,(H,56,66)(H,57,69)(H,58,71)(H,59,70)(H,60,67)(H,61,68)/b14-6-/t28-,29+,30+,32-,34+,35-,36-,37+,38-,40+,41-,42-,44-,45-,46+/m0/s1
InChI KeyHSSQGTKMQIAYNB-ARSFXBAVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.65ALOGPS
logP2.79ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)8.73ChemAxon
pKa (Strongest Basic)-5.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area332.65 ŲChemAxon
Rotatable Bond Count17ChemAxon
Refractivity282.84 m³·mol⁻¹ChemAxon
Polarizability114.34 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA018697
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78441494
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588308
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Bae M, Chung B, Oh KB, Shin J, Oh DC: Hormaomycins B and C: New Antibiotic Cyclic Depsipeptides from a Marine Mudflat-Derived Streptomyces sp. Mar Drugs. 2015 Aug 14;13(8):5187-200. doi: 10.3390/md13085187. [PubMed:26287218 ]