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Record Information
Version2.0
Created at2021-01-05 23:33:04 UTC
Updated at2021-07-15 17:17:05 UTC
NP-MRD IDNP0014360
Secondary Accession NumbersNone
Natural Product Identification
Common NameKolossin A
Provided ByNPAtlasNPAtlas Logo
Description Kolossin A is found in Photorhabdus luminescens. Kolossin A was first documented in 2015 (PMID: 26118790). Based on a literature review very few articles have been published on (2S)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2R,3R)-1,3-dihydroxy-2-{[(2R)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-[(hydroxymethylidene)amino]-4-methylpentylidene]amino}propylidene]amino}-4-methylpentylidene]amino}-3-methylbutylidene]amino}-3-(4-hydroxyphenyl)propylidene]amino}-4-methylpentylidene]amino}-3-methylbutylidene]amino}butylidene]amino}-1-hydroxy-3-methylbutylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-3-methylbutylidene]amino}-1,3-dihydroxypropylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-3-methylbutylidene]amino}-3-methylbutanoic acid.
Structure
Thumb
Synonyms
ValueSource
(2S)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2R,3R)-1,3-dihydroxy-2-{[(2R)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-[(hydroxymethylidene)amino]-4-methylpentylidene]amino}propylidene]amino}-4-methylpentylidene]amino}-3-methylbutylidene]amino}-3-(4-hydroxyphenyl)propylidene]amino}-4-methylpentylidene]amino}-3-methylbutylidene]amino}butylidene]amino}-1-hydroxy-3-methylbutylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-3-methylbutylidene]amino}-1,3-dihydroxypropylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-3-methylbutylidene]amino}-3-methylbutanoateGenerator
Chemical FormulaC80H137N15O20
Average Mass1629.0610 Da
Monoisotopic Mass1628.01643 Da
IUPAC Name(2S)-2-[(2R)-2-[(2S)-2-[(2R)-3-hydroxy-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2R,3R)-3-hydroxy-2-[(2R)-2-{2-[(2R)-3-(4-hydroxyphenyl)-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2R)-2-formamido-4-methylpentanamido]propanamido]-4-methylpentanamido]-3-methylbutanamido]propanamido]-4-methylpentanamido}-3-methylbutanamido]butanamido]-3-methylbutanamido]-4-methylpentanamido]-3-methylbutanamido]propanamido]-4-methylpentanamido]-3-methylbutanamido]-3-methylbutanoic acid
Traditional Name(2S)-2-[(2R)-2-[(2S)-2-[(2R)-3-hydroxy-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2R,3R)-3-hydroxy-2-[(2R)-2-{2-[(2R)-3-(4-hydroxyphenyl)-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2R)-2-formamido-4-methylpentanamido]propanamido]-4-methylpentanamido]-3-methylbutanamido]propanamido]-4-methylpentanamido}-3-methylbutanamido]butanamido]-3-methylbutanamido]-4-methylpentanamido]-3-methylbutanamido]propanamido]-4-methylpentanamido]-3-methylbutanamido]-3-methylbutanoic acid
CAS Registry NumberNot Available
SMILES
CC(C)C[C@@H](NC=O)C(=O)N[C@@H](C)C(=O)N[C@H](CC(C)C)C(=O)N[C@@H](C(C)C)C(=O)N[C@H](CC1=CC=C(O)C=C1)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(C)C)C(=O)N[C@H]([C@@H](C)O)C(=O)N[C@@H](C(C)C)C(=O)N[C@H](CC(C)C)C(=O)N[C@@H](C(C)C)C(=O)N[C@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(C)C)C(=O)N[C@@H](C(C)C)C(O)=O
InChI Identifier
InChI=1S/C80H137N15O20/c1-37(2)29-52(81-36-97)67(101)82-48(23)66(100)83-53(30-38(3)4)69(103)89-59(42(11)12)74(108)87-57(34-50-25-27-51(99)28-26-50)68(102)84-54(31-39(5)6)70(104)92-63(46(19)20)78(112)95-65(49(24)98)79(113)93-61(44(15)16)75(109)86-56(33-41(9)10)72(106)90-60(43(13)14)76(110)88-58(35-96)73(107)85-55(32-40(7)8)71(105)91-62(45(17)18)77(111)94-64(47(21)22)80(114)115/h25-28,36-49,52-65,96,98-99H,29-35H2,1-24H3,(H,81,97)(H,82,101)(H,83,100)(H,84,102)(H,85,107)(H,86,109)(H,87,108)(H,88,110)(H,89,103)(H,90,106)(H,91,105)(H,92,104)(H,93,113)(H,94,111)(H,95,112)(H,114,115)/t48-,49+,52+,53+,54-,55-,56+,57+,58+,59-,60-,61-,62+,63+,64-,65+/m0/s1
InChI KeyZAPPZLPCBZYMIJ-HBMHPLBUSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Photorhabdus luminescensNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.95ChemAxon
pKa (Strongest Acidic)3.98ChemAxon
pKa (Strongest Basic)-6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count20ChemAxon
Hydrogen Donor Count19ChemAxon
Polar Surface Area534.49 ŲChemAxon
Rotatable Bond Count50ChemAxon
Refractivity424.06 m³·mol⁻¹ChemAxon
Polarizability177 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA020256
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78441567
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588766
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Bode HB, Brachmann AO, Jadhav KB, Seyfarth L, Dauth C, Fuchs SW, Kaiser M, Waterfield NR, Sack H, Heinemann SH, Arndt HD: Structure Elucidation and Activity of Kolossin A, the D-/L-Pentadecapeptide Product of a Giant Nonribosomal Peptide Synthetase. Angew Chem Int Ed Engl. 2015 Aug 24;54(35):10352-5. doi: 10.1002/anie.201502835. Epub 2015 Jun 26. [PubMed:26118790 ]