Np mrd loader

Record Information
Version1.0
Created at2021-01-05 23:30:06 UTC
Updated at2021-07-15 17:16:53 UTC
NP-MRD IDNP0014289
Secondary Accession NumbersNone
Natural Product Identification
Common NameSuncheonoside D
Provided ByNPAtlasNPAtlas Logo
Description Suncheonoside D is found in Streptomyces sp. It was first documented in 2015 (PMID: 26078114). Based on a literature review a significant number of articles have been published on Suncheonoside D (PMID: 34607398) (PMID: 34606198) (PMID: 34607343) (PMID: 34607305).
Structure
Thumb
Synonyms
ValueSource
[3,5-Dimethyl-2-(propan-2-yl)-4,6-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})phenyl](methylsulphanyl)methanoneGenerator
Chemical FormulaC25H38O11S
Average Mass546.6300 Da
Monoisotopic Mass546.21348 Da
IUPAC Name[3,5-dimethyl-2-(propan-2-yl)-4,6-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})phenyl](methylsulfanyl)methanone
Traditional Name[2-isopropyl-3,5-dimethyl-4,6-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy})phenyl](methylsulfanyl)methanone
CAS Registry NumberNot Available
SMILES
CSC(=O)C1=C(C(C)C)C(C)=C(O[C@@H]2O[C@@H](C)[C@H](O)[C@@H](O)[C@H]2O)C(C)=C1O[C@@H]1O[C@@H](C)[C@H](O)[C@@H](O)[C@H]1O
InChI Identifier
InChI=1S/C25H38O11S/c1-8(2)13-9(3)21(35-24-19(30)17(28)15(26)11(5)33-24)10(4)22(14(13)23(32)37-7)36-25-20(31)18(29)16(27)12(6)34-25/h8,11-12,15-20,24-31H,1-7H3/t11-,12-,15-,16-,17+,18+,19+,20+,24-,25-/m0/s1
InChI KeyJEZSIZIVEGJGBG-FGUYRURZSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.51ALOGPS
logP1.95ChemAxon
logS-2.4ALOGPS
pKa (Strongest Acidic)11.91ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area175.37 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity133.82 m³·mol⁻¹ChemAxon
Polarizability56.26 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA016653
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID35517080
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound122180312
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Shin B, Ahn S, Noh M, Shin J, Oh DC: Suncheonosides A-D, Benzothioate Glycosides from a Marine-Derived Streptomyces sp. J Nat Prod. 2015 Jun 26;78(6):1390-6. doi: 10.1021/acs.jnatprod.5b00284. Epub 2015 Jun 16. [PubMed:26078114 ]
  2. Kaya MO, Pamukcu E, Yakar B: The role of vitamin D deficiency on the Covid-19: A systematic review and meta-analysis of observational studies. Epidemiol Health. 2021 Sep 23:e2021074. doi: 10.4178/epih.e2021074. [PubMed:34607398 ]
  3. Giljam-Enright M, Statham S, Inglis-Jassiem G, van Niekerk L: The social determinants of health in rural and urban South Africa: A collective case study of Xhosa women with stroke. 2020. [PubMed:34606198 ]
  4. Zhang Y, Begum HA, Grewal H, Etxeandia Ikobaltzeta I, Morgano GP, Khatib R, Nieuwlaat R, Ding C, Wiercioch W, Mustafa RA, Lim W, Schunemann HJ: Cost-effectiveness of diagnostic strategies for venous thromboembolism: a systematic review. Blood Adv. 2021 Oct 4. pii: 477147. doi: 10.1182/bloodadvances.2020003576. [PubMed:34607343 ]
  5. Amirhashchi F, Azaran A, Seyedian SS, Jalilian S, Keikhaei B: Occult Hepatitis B Virus Infection among beta-Thalassemia Major Patients in Ahvaz City, Iran. Am J Trop Med Hyg. 2021 Oct 4. pii: tpmd210785. doi: 10.4269/ajtmh.21-0785. [PubMed:34607305 ]