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Record Information
Version2.0
Created at2021-01-05 23:15:40 UTC
Updated at2021-07-15 17:16:03 UTC
NP-MRD IDNP0013992
Secondary Accession NumbersNone
Natural Product Identification
Common NameOrnibactin C4
Provided ByNPAtlasNPAtlas Logo
Description Ornibactin C4 is found in Pseudomonas. Based on a literature review very few articles have been published on 3-{[2-amino-5-(N,3-dihydroxybutanamido)-1-hydroxypentylidene]amino}-3-{[1-({1-[(4-aminobutyl)-C-hydroxycarbonimidoyl]-4-(N-hydroxyformamido)butyl}-C-hydroxycarbonimidoyl)-2-hydroxyethyl]-C-hydroxycarbonimidoyl}-2-hydroxypropanoic acid.
Structure
Thumb
Synonyms
ValueSource
3-{[2-amino-5-(N,3-dihydroxybutanamido)-1-hydroxypentylidene]amino}-3-{[1-({1-[(4-aminobutyl)-C-hydroxycarbonimidoyl]-4-(N-hydroxyformamido)butyl}-C-hydroxycarbonimidoyl)-2-hydroxyethyl]-C-hydroxycarbonimidoyl}-2-hydroxypropanoateGenerator
Chemical FormulaC26H48N8O13
Average Mass680.7130 Da
Monoisotopic Mass680.33408 Da
IUPAC Name(2S,3S)-3-[(2S)-2-amino-5-[(3S)-N,3-dihydroxybutanamido]pentanamido]-3-{[(1S)-1-{[(1R)-1-[(4-aminobutyl)carbamoyl]-4-(N-hydroxyformamido)butyl]carbamoyl}-2-hydroxyethyl]carbamoyl}-2-hydroxypropanoic acid
Traditional Name(2S,3S)-3-[(2S)-2-amino-5-[(3S)-N,3-dihydroxybutanamido]pentanamido]-3-{[(1S)-1-{[(1R)-1-[(4-aminobutyl)carbamoyl]-4-(N-hydroxyformamido)butyl]carbamoyl}-2-hydroxyethyl]carbamoyl}-2-hydroxypropanoic acid
CAS Registry NumberNot Available
SMILES
CC(O)CC(=O)N(O)CCCC(N)C(=O)NC(C(O)C(O)=O)C(=O)NC(CO)C(=O)NC(CCCN(O)C=O)C(=O)NCCCCN
InChI Identifier
InChI=1S/C26H48N8O13/c1-15(37)12-19(38)34(47)11-4-6-16(28)22(40)32-20(21(39)26(44)45)25(43)31-18(13-35)24(42)30-17(7-5-10-33(46)14-36)23(41)29-9-3-2-8-27/h14-18,20-21,35,37,39,46-47H,2-13,27-28H2,1H3,(H,29,41)(H,30,42)(H,31,43)(H,32,40)(H,44,45)
InChI KeyCODGHFHXEFKOMN-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
PseudomonasNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-2.9ALOGPS
logP-9.9ChemAxon
logS-2.4ALOGPS
pKa (Strongest Acidic)3.17ChemAxon
pKa (Strongest Basic)9.93ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area347.51 ŲChemAxon
Rotatable Bond Count24ChemAxon
Refractivity159.65 m³·mol⁻¹ChemAxon
Polarizability68.51 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA008538
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444809
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound133053363
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References