NP-MRD: Showing NP-Card for Phomentrioloxin B (NP0013834)

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Record Information

Version

2.0

Created at

2021-01-05 23:08:33 UTC

Updated at

2021-07-15 17:15:35 UTC

NP-MRD ID

NP0013834

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Phomentrioloxin B

Provided By

NPAtlas

Description

Phomentrioloxin B belongs to the class of organic compounds known as cyclohexenones. Cyclohexenones are compounds containing a cylohexenone moiety, which is a six-membered aliphatic ring that carries a ketone and has one endocyclic double bond. Phomentrioloxin B is found in Diaporthe gulyae. Phomentrioloxin B was first documented in 2015 (PMID: 25700035). Based on a literature review very few articles have been published on Phomentrioloxin B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242119503D          

 43 43  0  0  0  0            999 V2000
    1.8624   -2.2541   -0.0211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6363   -1.0802   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2939   -0.4860   -0.5015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -0.0142   -0.4561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1441    0.5257   -0.3933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5450    1.2752    0.6209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9183    1.8118    0.6493 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9362    2.9741   -0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8297    0.7437    0.0678 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1648    1.1346    0.1549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8895    0.2283    0.8939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4758    0.5695   -1.3771 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2800   -0.4550   -1.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0454    0.2176   -1.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6061   -0.3490   -2.5485 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6600   -0.2350   -1.1743 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0277   -0.7621   -0.9201 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3656   -0.7250    0.5354 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4444   -0.0366    0.9695 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8217    0.0311    2.4003 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2507    0.6614   -0.0619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0515   -2.7843    0.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8204   -2.7074   -0.0642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8683    1.5120    1.4572 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2543    2.0340    1.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0072    3.2660   -0.3753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6186   -0.1956    0.5967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9499    0.5788    0.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8862   -0.8014    0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5495    0.1785    1.9646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6931    1.4834   -1.9759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8481   -0.8863   -2.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5357    0.8237   -0.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5287   -0.2058   -2.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8095   -0.1885   -1.5069 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1664   -1.8099   -1.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8057   -1.2068    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9613   -0.1047    3.0768 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5749   -0.7568    2.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2471    1.0280    2.6244 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0987    1.2223    0.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7059   -0.0414   -0.7815 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6571    1.4310   -0.6113 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3  0  0  0
  2  3  1  0  0  0  0
  3  4  3  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
  2 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  3  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 14  5  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  1  0  0  0
  8 26  1  0  0  0  0
  9 27  1  1  0  0  0
 11 28  1  0  0  0  0
 11 29  1  0  0  0  0
 11 30  1  0  0  0  0
 12 31  1  6  0  0  0
 13 32  1  0  0  0  0
 16 33  1  0  0  0  0
 16 34  1  0  0  0  0
 17 35  1  0  0  0  0
 17 36  1  0  0  0  0
 18 37  1  0  0  0  0
 20 38  1  0  0  0  0
 20 39  1  0  0  0  0
 20 40  1  0  0  0  0
 21 41  1  0  0  0  0
 21 42  1  0  0  0  0
 21 43  1  0  0  0  0
M  END

     RDKit          3D

 43 43  0  0  0  0  0  0  0  0999 V2000
    1.8624   -2.2541   -0.0211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6363   -1.0802   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2939   -0.4860   -0.5015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -0.0142   -0.4561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1441    0.5257   -0.3933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5450    1.2752    0.6209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9183    1.8118    0.6493 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9362    2.9741   -0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8297    0.7437    0.0678 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1648    1.1346    0.1549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8895    0.2283    0.8939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4758    0.5695   -1.3771 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2800   -0.4550   -1.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0454    0.2176   -1.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6061   -0.3490   -2.5485 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6600   -0.2350   -1.1743 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0277   -0.7621   -0.9201 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3656   -0.7250    0.5354 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4444   -0.0366    0.9695 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8217    0.0311    2.4003 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2507    0.6614   -0.0619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0515   -2.7843    0.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8204   -2.7074   -0.0642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8683    1.5120    1.4572 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2543    2.0340    1.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0072    3.2660   -0.3753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6186   -0.1956    0.5967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9499    0.5788    0.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8862   -0.8014    0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5495    0.1785    1.9646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6931    1.4834   -1.9759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8481   -0.8863   -2.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5357    0.8237   -0.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5287   -0.2058   -2.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8095   -0.1885   -1.5069 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1664   -1.8099   -1.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8057   -1.2068    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9613   -0.1047    3.0768 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5749   -0.7568    2.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2471    1.0280    2.6244 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0987    1.2223    0.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7059   -0.0414   -0.7815 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6571    1.4310   -0.6113 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  3  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
  2 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  3
 19 20  1  0
 19 21  1  0
 14  5  1  0
  1 22  1  0
  1 23  1  0
  6 24  1  0
  7 25  1  1
  8 26  1  0
  9 27  1  1
 11 28  1  0
 11 29  1  0
 11 30  1  0
 12 31  1  6
 13 32  1  0
 16 33  1  0
 16 34  1  0
 17 35  1  0
 17 36  1  0
 18 37  1  0
 20 38  1  0
 20 39  1  0
 20 40  1  0
 21 41  1  0
 21 42  1  0
 21 43  1  0
M  END


  Mrv1652306242119503D          

 43 43  0  0  0  0            999 V2000
    1.8624   -2.2541   -0.0211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6363   -1.0802   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2939   -0.4860   -0.5015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -0.0142   -0.4561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1441    0.5257   -0.3933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5450    1.2752    0.6209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9183    1.8118    0.6493 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9362    2.9741   -0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8297    0.7437    0.0678 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1648    1.1346    0.1549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8895    0.2283    0.8939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4758    0.5695   -1.3771 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2800   -0.4550   -1.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0454    0.2176   -1.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6061   -0.3490   -2.5485 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6600   -0.2350   -1.1743 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0277   -0.7621   -0.9201 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3656   -0.7250    0.5354 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4444   -0.0366    0.9695 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8217    0.0311    2.4003 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2507    0.6614   -0.0619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0515   -2.7843    0.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8204   -2.7074   -0.0642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8683    1.5120    1.4572 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2543    2.0340    1.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0072    3.2660   -0.3753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6186   -0.1956    0.5967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9499    0.5788    0.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8862   -0.8014    0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5495    0.1785    1.9646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6931    1.4834   -1.9759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8481   -0.8863   -2.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5357    0.8237   -0.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5287   -0.2058   -2.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8095   -0.1885   -1.5069 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1664   -1.8099   -1.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8057   -1.2068    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9613   -0.1047    3.0768 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5749   -0.7568    2.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2471    1.0280    2.6244 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0987    1.2223    0.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7059   -0.0414   -0.7815 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6571    1.4310   -0.6113 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3  0  0  0
  2  3  1  0  0  0  0
  3  4  3  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
  2 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  3  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 14  5  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  1  0  0  0
  8 26  1  0  0  0  0
  9 27  1  1  0  0  0
 11 28  1  0  0  0  0
 11 29  1  0  0  0  0
 11 30  1  0  0  0  0
 12 31  1  6  0  0  0
 13 32  1  0  0  0  0
 16 33  1  0  0  0  0
 16 34  1  0  0  0  0
 17 35  1  0  0  0  0
 17 36  1  0  0  0  0
 18 37  1  0  0  0  0
 20 38  1  0  0  0  0
 20 39  1  0  0  0  0
 20 40  1  0  0  0  0
 21 41  1  0  0  0  0
 21 42  1  0  0  0  0
 21 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0013834

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])C([H])=C(C#CC(=C([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C(=O)[C@@]([H])(O[H])[C@]1([H])OC([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C17H22O4/c1-11(2)6-5-7-12(3)8-9-13-10-14(18)17(21-4)16(20)15(13)19/h6,10,14,16-18,20H,3,5,7H2,1-2,4H3/t14-,16-,17-/m1/s1

> <INCHI_KEY>
JKVHMQFXNMEOSL-DJIMGWMZSA-N

> <FORMULA>
C17H22O4

> <MOLECULAR_WEIGHT>
290.359

> <EXACT_MASS>
290.151809188

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
32.933335728785416

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4R,5R,6S)-4,6-dihydroxy-5-methoxy-2-(7-methyl-3-methylideneoct-6-en-1-yn-1-yl)cyclohex-2-en-1-one

> <ALOGPS_LOGP>
1.69

> <JCHEM_LOGP>
2.177229292666667

> <ALOGPS_LOGS>
-3.76

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.757190669996696

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.25741607726825

> <JCHEM_PKA_STRONGEST_BASIC>
-3.4005632234956185

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
83.80329999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.08e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4R,5R,6S)-4,6-dihydroxy-5-methoxy-2-(7-methyl-3-methylideneoct-6-en-1-yn-1-yl)cyclohex-2-en-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 43 43  0  0  0  0  0  0  0  0999 V2000
    1.8624   -2.2541   -0.0211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6363   -1.0802   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2939   -0.4860   -0.5015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -0.0142   -0.4561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1441    0.5257   -0.3933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5450    1.2752    0.6209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9183    1.8118    0.6493 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9362    2.9741   -0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8297    0.7437    0.0678 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1648    1.1346    0.1549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8895    0.2283    0.8939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4758    0.5695   -1.3771 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2800   -0.4550   -1.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0454    0.2176   -1.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6061   -0.3490   -2.5485 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6600   -0.2350   -1.1743 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0277   -0.7621   -0.9201 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3656   -0.7250    0.5354 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4444   -0.0366    0.9695 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8217    0.0311    2.4003 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2507    0.6614   -0.0619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0515   -2.7843    0.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8204   -2.7074   -0.0642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8683    1.5120    1.4572 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2543    2.0340    1.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0072    3.2660   -0.3753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6186   -0.1956    0.5967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9499    0.5788    0.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8862   -0.8014    0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5495    0.1785    1.9646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6931    1.4834   -1.9759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8481   -0.8863   -2.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5357    0.8237   -0.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5287   -0.2058   -2.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8095   -0.1885   -1.5069 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1664   -1.8099   -1.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8057   -1.2068    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9613   -0.1047    3.0768 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5749   -0.7568    2.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2471    1.0280    2.6244 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0987    1.2223    0.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7059   -0.0414   -0.7815 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6571    1.4310   -0.6113 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  3  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
  2 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  3
 19 20  1  0
 19 21  1  0
 14  5  1  0
  1 22  1  0
  1 23  1  0
  6 24  1  0
  7 25  1  1
  8 26  1  0
  9 27  1  1
 11 28  1  0
 11 29  1  0
 11 30  1  0
 12 31  1  6
 13 32  1  0
 16 33  1  0
 16 34  1  0
 17 35  1  0
 17 36  1  0
 18 37  1  0
 20 38  1  0
 20 39  1  0
 20 40  1  0
 21 41  1  0
 21 42  1  0
 21 43  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       1.862  -2.254  -0.021  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.636  -1.080  -0.542  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.294  -0.486  -0.501  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.816  -0.014  -0.456  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.144   0.526  -0.393  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.545   1.275   0.621  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.918   1.812   0.649  0.00  0.00           C+0
HETATM    8  O   UNK     0      -3.936   2.974  -0.136  0.00  0.00           O+0
HETATM    9  C   UNK     0      -4.830   0.744   0.068  0.00  0.00           C+0
HETATM   10  O   UNK     0      -6.165   1.135   0.155  0.00  0.00           O+0
HETATM   11  C   UNK     0      -6.890   0.228   0.894  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.476   0.570  -1.377  0.00  0.00           C+0
HETATM   13  O   UNK     0      -5.280  -0.455  -1.894  0.00  0.00           O+0
HETATM   14  C   UNK     0      -3.045   0.218  -1.495  0.00  0.00           C+0
HETATM   15  O   UNK     0      -2.606  -0.349  -2.549  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.660  -0.235  -1.174  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.028  -0.762  -0.920  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.366  -0.725   0.535  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.444  -0.037   0.970  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.822   0.031   2.400  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.251   0.661  -0.062  0.00  0.00           C+0
HETATM   22  H   UNK     0       1.052  -2.784   0.444  0.00  0.00           H+0
HETATM   23  H   UNK     0       2.820  -2.707  -0.064  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.868   1.512   1.457  0.00  0.00           H+0
HETATM   25  H   UNK     0      -4.254   2.034   1.683  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.007   3.266  -0.375  0.00  0.00           H+0
HETATM   27  H   UNK     0      -4.619  -0.196   0.597  0.00  0.00           H+0
HETATM   28  H   UNK     0      -7.950   0.579   0.938  0.00  0.00           H+0
HETATM   29  H   UNK     0      -6.886  -0.801   0.469  0.00  0.00           H+0
HETATM   30  H   UNK     0      -6.550   0.179   1.965  0.00  0.00           H+0
HETATM   31  H   UNK     0      -4.693   1.483  -1.976  0.00  0.00           H+0
HETATM   32  H   UNK     0      -4.848  -0.886  -2.674  0.00  0.00           H+0
HETATM   33  H   UNK     0       2.536   0.824  -0.842  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.529  -0.206  -2.293  0.00  0.00           H+0
HETATM   35  H   UNK     0       4.809  -0.189  -1.507  0.00  0.00           H+0
HETATM   36  H   UNK     0       4.166  -1.810  -1.271  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.806  -1.207   1.316  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.961  -0.105   3.077  0.00  0.00           H+0
HETATM   39  H   UNK     0       6.575  -0.757   2.666  0.00  0.00           H+0
HETATM   40  H   UNK     0       6.247   1.028   2.624  0.00  0.00           H+0
HETATM   41  H   UNK     0       7.099   1.222   0.390  0.00  0.00           H+0
HETATM   42  H   UNK     0       6.706  -0.041  -0.782  0.00  0.00           H+0
HETATM   43  H   UNK     0       5.657   1.431  -0.611  0.00  0.00           H+0
CONECT    1    2   22   23                                                  
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   14                                                  
CONECT    6    5    7   24                                                  
CONECT    7    6    8    9   25                                             
CONECT    8    7   26                                                       
CONECT    9    7   10   12   27                                             
CONECT   10    9   11                                                       
CONECT   11   10   28   29   30                                             
CONECT   12    9   13   14   31                                             
CONECT   13   12   32                                                       
CONECT   14   12   15    5                                                  
CONECT   15   14                                                            
CONECT   16    2   17   33   34                                             
CONECT   17   16   18   35   36                                             
CONECT   18   17   19   37                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19   38   39   40                                             
CONECT   21   19   41   42   43                                             
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    6                                                            
CONECT   25    7                                                            
CONECT   26    8                                                            
CONECT   27    9                                                            
CONECT   28   11                                                            
CONECT   29   11                                                            
CONECT   30   11                                                            
CONECT   31   12                                                            
CONECT   32   13                                                            
CONECT   33   16                                                            
CONECT   34   16                                                            
CONECT   35   17                                                            
CONECT   36   17                                                            
CONECT   37   18                                                            
CONECT   38   20                                                            
CONECT   39   20                                                            
CONECT   40   20                                                            
CONECT   41   21                                                            
CONECT   42   21                                                            
CONECT   43   21                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   86    0
END

RDKit          3D

43 43  0  0  0  0  0  0  0  0999 V2000
    1.8624   -2.2541   -0.0211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6363   -1.0802   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2939   -0.4860   -0.5015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8155   -0.0142   -0.4561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1441    0.5257   -0.3933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5450    1.2752    0.6209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9183    1.8118    0.6493 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9362    2.9741   -0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8297    0.7437    0.0678 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1648    1.1346    0.1549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8895    0.2283    0.8939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4758    0.5695   -1.3771 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2800   -0.4550   -1.8942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0454    0.2176   -1.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6061   -0.3490   -2.5485 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6600   -0.2350   -1.1743 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0277   -0.7621   -0.9201 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3656   -0.7250    0.5354 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4444   -0.0366    0.9695 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8217    0.0311    2.4003 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2507    0.6614   -0.0619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0515   -2.7843    0.4435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8204   -2.7074   -0.0642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8683    1.5120    1.4572 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2543    2.0340    1.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0072    3.2660   -0.3753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6186   -0.1956    0.5967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9499    0.5788    0.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8862   -0.8014    0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5495    0.1785    1.9646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6931    1.4834   -1.9759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8481   -0.8863   -2.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5357    0.8237   -0.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5287   -0.2058   -2.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8095   -0.1885   -1.5069 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1664   -1.8099   -1.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8057   -1.2068    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9613   -0.1047    3.0768 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5749   -0.7568    2.6662 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2471    1.0280    2.6244 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0987    1.2223    0.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7059   -0.0414   -0.7815 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6571    1.4310   -0.6113 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  3  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
  2 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  3
 19 20  1  0
 19 21  1  0
 14  5  1  0
  1 22  1  0
  1 23  1  0
  6 24  1  0
  7 25  1  1
  8 26  1  0
  9 27  1  1
 11 28  1  0
 11 29  1  0
 11 30  1  0
 12 31  1  6
 13 32  1  0
 16 33  1  0
 16 34  1  0
 17 35  1  0
 17 36  1  0
 18 37  1  0
 20 38  1  0
 20 39  1  0
 20 40  1  0
 21 41  1  0
 21 42  1  0
 21 43  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
4,6-Dihydroxy-5-methoxy-2-(7-methyl-3-methyleneoct-6-en-1-ynyl)cyclohex-2-enone	MeSH

Chemical Formula

C₁₇H₂₂O₄

Average Mass

290.3590 Da

Monoisotopic Mass

290.15181 Da

IUPAC Name

(4R,5R,6S)-4,6-dihydroxy-5-methoxy-2-(7-methyl-3-methylideneoct-6-en-1-yn-1-yl)cyclohex-2-en-1-one

Traditional Name

(4R,5R,6S)-4,6-dihydroxy-5-methoxy-2-(7-methyl-3-methylideneoct-6-en-1-yn-1-yl)cyclohex-2-en-1-one

CAS Registry Number

Not Available

SMILES

CO[C@@H]1[C@H](O)C=C(C#CC(=C)CCC=C(C)C)C(=O)[C@H]1O

InChI Identifier

InChI=1S/C17H22O4/c1-11(2)6-5-7-12(3)8-9-13-10-14(18)17(21-4)16(20)15(13)19/h6,10,14,16-18,20H,3,5,7H2,1-2,4H3/t14-,16-,17-/m1/s1

InChI Key

JKVHMQFXNMEOSL-DJIMGWMZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Carthamus Ianatus	KNApSAcK Database	22123792
Diaporthe gulyae	NPAtlas	25700035

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclohexenones. Cyclohexenones are compounds containing a cylohexenone moiety, which is a six-membered aliphatic ring that carries a ketone and has one endocyclic double bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Cyclohexenones

Alternative Parents

Substituents

Cyclohexenone
Cyclitol or derivatives
Secondary alcohol
Ether
Dialkyl ether
Organic oxide
Hydrocarbon derivative
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.69	ALOGPS
logP	2.18	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	12.26	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	83.8 m³·mol⁻¹	ChemAxon
Polarizability	32.93 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002894

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00053675

Chemspider ID

78436574

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

132551969

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Andolfi A, Boari A, Evidente M, Cimmino A, Vurro M, Ash G, Evidente A: Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus). J Nat Prod. 2015 Apr 24;78(4):623-9. doi: 10.1021/np500570h. Epub 2015 Feb 20. [PubMed:25700035 ]

Showing NP-Card for Phomentrioloxin B (NP0013834)

MOL for NP0013834 (Phomentrioloxin B)

3D MOL for NP0013834 (Phomentrioloxin B)

3D SDF for NP0013834 (Phomentrioloxin B)

3D-SDF for NP0013834 (Phomentrioloxin B)

PDB for NP0013834 (Phomentrioloxin B)

3D PDB for NP0013834 (Phomentrioloxin B)

SMILES for NP0013834 (Phomentrioloxin B)

INCHI for NP0013834 (Phomentrioloxin B)

Structure for NP0013834 (Phomentrioloxin B)

3D Structure for NP0013834 (Phomentrioloxin B)