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Record Information
Version1.0
Created at2021-01-05 23:00:31 UTC
Updated at2021-07-15 17:15:18 UTC
NP-MRD IDNP0013731
Secondary Accession NumbersNone
Natural Product Identification
Common NameAlbicidin
Provided ByNPAtlasNPAtlas Logo
Description Albicidin is found in Xanthomonas albilineans. It was first documented in 2015 (PMID: 25599532). Based on a literature review very few articles have been published on 4-{[(4-{4-[(2S)-3-cyano-2-({4-[(2E)-3-(4-hydroxyphenyl)-2-methylprop-2-enamido]phenyl}formamido)propanamido]benzamido}-2-hydroxy-3-methoxyphenyl)(hydroxy)methylidene]amino}-2-hydroxy-3-methoxybenzoic acid.
Structure
Thumb
Synonyms
ValueSource
4-{[(4-{4-[(2S)-3-cyano-2-({4-[(2E)-3-(4-hydroxyphenyl)-2-methylprop-2-enamido]phenyl}formamido)propanamido]benzamido}-2-hydroxy-3-methoxyphenyl)(hydroxy)methylidene]amino}-2-hydroxy-3-methoxybenzoateGenerator
Chemical FormulaC44H38N6O12
Average Mass842.8180 Da
Monoisotopic Mass842.25477 Da
IUPAC Name4-(4-{4-[(2S)-3-cyano-2-({4-[(2E)-3-(4-hydroxyphenyl)-2-methylprop-2-enamido]phenyl}formamido)propanamido]benzamido}-2-hydroxy-3-methoxybenzamido)-2-hydroxy-3-methoxybenzoic acid
Traditional Name4-(4-{4-[(2S)-3-cyano-2-({4-[(2E)-3-(4-hydroxyphenyl)-2-methylprop-2-enamido]phenyl}formamido)propanamido]benzamido}-2-hydroxy-3-methoxybenzamido)-2-hydroxy-3-methoxybenzoic acid
CAS Registry NumberNot Available
SMILES
COC1=C(NC(=O)C2=C(O)C(OC)=C(NC(=O)C3=CC=C(NC(=O)[C@H](CC#N)NC(=O)C4=CC=C(NC(=O)C(\C)=C\C5=CC=C(O)C=C5)C=C4)C=C3)C=C2)C=CC(C(O)=O)=C1O
InChI Identifier
InChI=1S/C44H38N6O12/c1-23(22-24-4-14-29(51)15-5-24)39(54)46-27-10-6-26(7-11-27)41(56)50-34(20-21-45)43(58)47-28-12-8-25(9-13-28)40(55)48-32-18-16-30(35(52)37(32)61-2)42(57)49-33-19-17-31(44(59)60)36(53)38(33)62-3/h4-19,22,34,51-53H,20H2,1-3H3,(H,46,54)(H,47,58)(H,48,55)(H,49,57)(H,50,56)(H,59,60)/b23-22+/t34-/m0/s1
InChI KeyNZSWNNDHPOTJNH-VEJILBAHSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Xanthomonas albilineansNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.38ALOGPS
logP5.2ChemAxon
logS-5.2ALOGPS
pKa (Strongest Acidic)2.66ChemAxon
pKa (Strongest Basic)-5.4ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area285.74 ŲChemAxon
Rotatable Bond Count15ChemAxon
Refractivity230.73 m³·mol⁻¹ChemAxon
Polarizability86.43 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020027
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID32821621
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound78322514
PDB IDBWH
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Cociancich S, Pesic A, Petras D, Uhlmann S, Kretz J, Schubert V, Vieweg L, Duplan S, Marguerettaz M, Noell J, Pieretti I, Hugelland M, Kemper S, Mainz A, Rott P, Royer M, Sussmuth RD: The gyrase inhibitor albicidin consists of p-aminobenzoic acids and cyanoalanine. Nat Chem Biol. 2015 Mar;11(3):195-7. doi: 10.1038/nchembio.1734. Epub 2015 Jan 19. [PubMed:25599532 ]