NP-MRD: Showing NP-Card for Palmarumycin B7 (NP0013297)

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Record Information

Version

2.0

Created at

2021-01-05 22:42:18 UTC

Updated at

2021-07-15 17:14:06 UTC

NP-MRD ID

NP0013297

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Palmarumycin B7

Provided By

NPAtlas

Description

Palmarumycin B7 is found in Berkleasmium sp. Based on a literature review very few articles have been published on Palmarumycin B7.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242119353D          

 43 47  0  0  0  0            999 V2000
   -2.1096    4.5257    0.8605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1534    3.1421    1.1257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9168    2.1701    0.1632 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2745    0.4803    1.7943 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9476   -0.0026   -0.3791 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0812    0.5725   -1.0298 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3109    0.6126   -1.1532 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.1409    0.0589    1.2529 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.7889   -0.3754    3.2368 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242119353D          

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M  END
> <DATABASE_ID>
NP0013297

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=O)[C@](O[H])(C(=O)OC([H])([H])[H])C3(OC4=C([H])C([H])=C([H])C5=C([H])C([H])=C([H])C(O3)=C45)C2=C(O[H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C21H14O8/c1-27-19(25)20(26)18(24)16-11(22)8-9-12(23)17(16)21(20)28-13-6-2-4-10-5-3-7-14(29-21)15(10)13/h2-9,22-23,26H,1H3/t20-/m0/s1

> <INCHI_KEY>
ANFJVULUYFHQLL-FQEVSTJZSA-N

> <FORMULA>
C21H14O8

> <MOLECULAR_WEIGHT>
394.335

> <EXACT_MASS>
394.068867411

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
37.77490918904568

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (2R)-2,4,7-trihydroxy-3-oxo-2,3-dihydro-2',4'-dioxaspiro[indene-1,3'-tricyclo[7.3.1.0^{5,13}]tridecane]-1'(13'),5',7',9',11'-pentaene-2-carboxylate

> <ALOGPS_LOGP>
2.46

> <JCHEM_LOGP>
3.5884271603333326

> <ALOGPS_LOGS>
-3.47

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.884948761146843

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.159399964107589

> <JCHEM_PKA_STRONGEST_BASIC>
-4.770388132885129

> <JCHEM_POLAR_SURFACE_AREA>
122.52000000000001

> <JCHEM_REFRACTIVITY>
97.73510000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.35e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2R)-2,4,7-trihydroxy-3-oxo-2',4'-dioxaspiro[indene-1,3'-tricyclo[7.3.1.0^{5,13}]tridecane]-1'(13'),5',7',9',11'-pentaene-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 43 47  0  0  0  0  0  0  0  0999 V2000
   -2.1096    4.5257    0.8605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1534    3.1421    1.1257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9168    2.1701    0.1632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6528    2.5727   -0.9937 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9710    0.7186    0.4766 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2745    0.4803    1.7943 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9476   -0.0026   -0.3791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9640    0.4266   -0.9751 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4972   -1.3921   -0.4145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1618   -2.5987   -0.6727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5186   -2.5923   -0.9633 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4862   -3.8148   -0.6443 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1396   -3.7974   -0.3537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4832   -2.6123   -0.0992 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8710   -2.6258    0.1901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1422   -1.3927   -0.1237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6853    0.0062    0.1097 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0812    0.5725   -1.0298 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3109    0.6126   -1.1532 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9423    0.8879   -2.3471 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3239    0.9295   -2.4786 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1139    0.6876   -1.3779 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4921    0.4120   -0.1822 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2393    0.1608    0.9577 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6417   -0.1212    2.1825 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2662   -0.1561    2.2844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5125    0.0914    1.1610 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0986    0.3696   -0.0478 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1409    0.0589    1.2529 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1161    4.9676    0.9578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5531    4.6750   -0.1577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8051    5.0787    1.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6558   -0.2111    2.1814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0086   -1.7176   -0.9846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0346   -4.7254   -0.8492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5793   -4.7189   -0.3217 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3618   -3.5053    0.2112 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3564    1.0836   -3.2357 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7557    1.1558   -3.4630 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1821    0.7160   -1.4625 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3205    0.1766    0.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2189   -0.3187    3.0784 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7889   -0.3754    3.2368 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  1
  5  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  1  6
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 17  5  1  0
 28 19  1  0
 16  9  1  0
 29 17  1  0
 28 23  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  6 33  1  0
 11 34  1  0
 12 35  1  0
 13 36  1  0
 15 37  1  0
 20 38  1  0
 21 39  1  0
 22 40  1  0
 24 41  1  0
 25 42  1  0
 26 43  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.110   4.526   0.861  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.153   3.142   1.126  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.917   2.170   0.163  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.653   2.573  -0.994  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.971   0.719   0.477  0.00  0.00           C+0
HETATM    6  O   UNK     0      -2.275   0.480   1.794  0.00  0.00           O+0
HETATM    7  C   UNK     0      -2.948  -0.003  -0.379  0.00  0.00           C+0
HETATM    8  O   UNK     0      -3.964   0.427  -0.975  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.497  -1.392  -0.415  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.162  -2.599  -0.673  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.519  -2.592  -0.963  0.00  0.00           O+0
HETATM   12  C   UNK     0      -2.486  -3.815  -0.644  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.140  -3.797  -0.354  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.483  -2.612  -0.099  0.00  0.00           C+0
HETATM   15  O   UNK     0       0.871  -2.626   0.190  0.00  0.00           O+0
HETATM   16  C   UNK     0      -1.142  -1.393  -0.124  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.685   0.006   0.110  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.081   0.573  -1.030  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.311   0.613  -1.153  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.942   0.888  -2.347  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.324   0.930  -2.479  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.114   0.688  -1.378  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.492   0.412  -0.182  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.239   0.161   0.958  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.642  -0.121   2.183  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.266  -0.156   2.284  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.513   0.091   1.161  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.099   0.370  -0.048  0.00  0.00           C+0
HETATM   29  O   UNK     0       0.141   0.059   1.253  0.00  0.00           O+0
HETATM   30  H   UNK     0      -1.116   4.968   0.958  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.553   4.675  -0.158  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.805   5.079   1.557  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.656  -0.211   2.181  0.00  0.00           H+0
HETATM   34  H   UNK     0      -5.009  -1.718  -0.985  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.035  -4.725  -0.849  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.579  -4.719  -0.322  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.362  -3.505   0.211  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.356   1.084  -3.236  0.00  0.00           H+0
HETATM   39  H   UNK     0       3.756   1.156  -3.463  0.00  0.00           H+0
HETATM   40  H   UNK     0       5.182   0.716  -1.462  0.00  0.00           H+0
HETATM   41  H   UNK     0       5.321   0.177   0.930  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.219  -0.319   3.078  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.789  -0.375   3.237  0.00  0.00           H+0
CONECT    1    2   30   31   32                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7   17                                             
CONECT    6    5   33                                                       
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   16                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10   34                                                       
CONECT   12   10   13   35                                                  
CONECT   13   12   14   36                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14   37                                                       
CONECT   16   14   17    9                                                  
CONECT   17   16   18    5   29                                             
CONECT   18   17   19                                                       
CONECT   19   18   20   28                                                  
CONECT   20   19   21   38                                                  
CONECT   21   20   22   39                                                  
CONECT   22   21   23   40                                                  
CONECT   23   22   24   28                                                  
CONECT   24   23   25   41                                                  
CONECT   25   24   26   42                                                  
CONECT   26   25   27   43                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27   19   23                                                  
CONECT   29   27   17                                                       
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    6                                                            
CONECT   34   11                                                            
CONECT   35   12                                                            
CONECT   36   13                                                            
CONECT   37   15                                                            
CONECT   38   20                                                            
CONECT   39   21                                                            
CONECT   40   22                                                            
CONECT   41   24                                                            
CONECT   42   25                                                            
CONECT   43   26                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   94    0
END

RDKit          3D

43 47  0  0  0  0  0  0  0  0999 V2000
   -2.1096    4.5257    0.8605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1534    3.1421    1.1257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9168    2.1701    0.1632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6528    2.5727   -0.9937 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9710    0.7186    0.4766 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2745    0.4803    1.7943 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9476   -0.0026   -0.3791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9640    0.4266   -0.9751 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4972   -1.3921   -0.4145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1618   -2.5987   -0.6727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5186   -2.5923   -0.9633 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4862   -3.8148   -0.6443 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1396   -3.7974   -0.3537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4832   -2.6123   -0.0992 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8710   -2.6258    0.1901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1422   -1.3927   -0.1237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6853    0.0062    0.1097 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0812    0.5725   -1.0298 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3109    0.6126   -1.1532 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9423    0.8879   -2.3471 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3239    0.9295   -2.4786 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1139    0.6876   -1.3779 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4921    0.4120   -0.1822 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2393    0.1608    0.9577 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6417   -0.1212    2.1825 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2662   -0.1561    2.2844 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5125    0.0914    1.1610 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0986    0.3696   -0.0478 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1409    0.0589    1.2529 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1161    4.9676    0.9578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5531    4.6750   -0.1577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8051    5.0787    1.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6558   -0.2111    2.1814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0086   -1.7176   -0.9846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0346   -4.7254   -0.8492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5793   -4.7189   -0.3217 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3618   -3.5053    0.2112 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3564    1.0836   -3.2357 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7557    1.1558   -3.4630 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1821    0.7160   -1.4625 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3205    0.1766    0.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2189   -0.3187    3.0784 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7889   -0.3754    3.2368 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  1
  5  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  1  6
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 17  5  1  0
 28 19  1  0
 16  9  1  0
 29 17  1  0
 28 23  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  6 33  1  0
 11 34  1  0
 12 35  1  0
 13 36  1  0
 15 37  1  0
 20 38  1  0
 21 39  1  0
 22 40  1  0
 24 41  1  0
 25 42  1  0
 26 43  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Methyl (2R)-2,4,7-trihydroxy-3-oxo-2,3-dihydro-2',4'-dioxaspiro[indene-1,3'-tricyclo[7.3.1.0,]tridecane]-1'(12'),5',7',9'(13'),10'-pentaene-2-carboxylic acid	Generator

Chemical Formula

C₂₁H₁₄O₈

Average Mass

394.3350 Da

Monoisotopic Mass

394.06887 Da

IUPAC Name

methyl (2R)-2,4,7-trihydroxy-3-oxo-2,3-dihydro-2',4'-dioxaspiro[indene-1,3'-tricyclo[7.3.1.0^{5,13}]tridecane]-1'(13'),5',7',9',11'-pentaene-2-carboxylate

Traditional Name

methyl (2R)-2,4,7-trihydroxy-3-oxo-2',4'-dioxaspiro[indene-1,3'-tricyclo[7.3.1.0^{5,13}]tridecane]-1'(13'),5',7',9',11'-pentaene-2-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)[C@@]1(O)C(=O)C2=C(O)C=CC(O)=C2C11OC2=CC=CC3=C2C(O1)=CC=C3

InChI Identifier

InChI=1S/C21H14O8/c1-27-19(25)20(26)18(24)16-11(22)8-9-12(23)17(16)21(20)28-13-6-2-4-10-5-3-7-14(29-21)15(10)13/h2-9,22-23,26H,1H3/t20-/m0/s1

InChI Key

ANFJVULUYFHQLL-FQEVSTJZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Berkleasmium sp.	NPAtlas	25237727

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.46	ALOGPS
logP	3.59	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	8.16	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	122.52 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	97.74 m³·mol⁻¹	ChemAxon
Polarizability	37.77 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA014954

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

58121559

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101888375

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Palmarumycin B7 (NP0013297)

MOL for NP0013297 (Palmarumycin B7)

3D MOL for NP0013297 (Palmarumycin B7)

3D SDF for NP0013297 (Palmarumycin B7)

3D-SDF for NP0013297 (Palmarumycin B7)

PDB for NP0013297 (Palmarumycin B7)

3D PDB for NP0013297 (Palmarumycin B7)

SMILES for NP0013297 (Palmarumycin B7)

INCHI for NP0013297 (Palmarumycin B7)

Structure for NP0013297 (Palmarumycin B7)

3D Structure for NP0013297 (Palmarumycin B7)