Np mrd loader

Record Information
Version2.0
Created at2021-01-05 22:37:50 UTC
Updated at2021-07-15 17:13:48 UTC
NP-MRD IDNP0013185
Secondary Accession NumbersNone
Natural Product Identification
Common NamePyoverdin
Provided ByNPAtlasNPAtlas Logo
Description Pyoverdin is found in Pseudomonas. Pyoverdin was first documented in 1989 (PMID: 2509364). Based on a literature review very few articles have been published on 4-({1-[(1-{[4-azanidyl-1-({1-[(carboxymethyl)-C-hydroxycarbonimidoyl]-4-(N-hydroxyformamido)butyl}-C-hydroxycarbonimidoyl)-4-oxobutyl]-C-hydroxycarbonimidoyl}-4-hydroxy-4-iminiumylbutyl)-C-hydroxycarbonimidoyl]-4-(N-hydroxyformamido)butyl}-C-hydroxycarbonimidoyl)-2-[1-({[(1S)-5-[(3-carboxy-1-hydroxypropylidene)amino]-8-hydroxy-9-oxo-1H,2H,3H,4H,9H-pyrimido[1,2-a]quinolin-1-yl](hydroxy)methylidene}amino)-2-hydroxyethyl]-3,4,5,6-tetrahydropyrimidin-1-ium.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC48H68N15O20
Average Mass1175.1560 Da
Monoisotopic Mass1174.47596 Da
IUPAC Name1-{[(1S)-1-[(6S)-6-{[(1S)-1-{[(1R)-3-carbamoyl-1-{[(1S)-3-carbamoyl-1-{[(1S)-1-[(carboxymethyl)carbamoyl]-4-(N-hydroxyformamido)butyl]carbamoyl}propyl]carbamoyl}propyl]carbamoyl}-4-(N-hydroxyformamido)butyl]carbamoyl}-1,4,5,6-tetrahydropyrimidin-2-yl]-2-hydroxyethyl]carbamoyl}-5-(3-carboxypropanamido)-8,9-dihydroxy-1H,2H,3H,4H-11alambda5-pyrimido[1,2-a]quinolin-11a-ylium
Traditional Name1-{[(1S)-1-[(4S)-4-{[(1S)-1-{[(1R)-3-carbamoyl-1-{[(1S)-3-carbamoyl-1-{[(1S)-1-(carboxymethylcarbamoyl)-4-(N-hydroxyformamido)butyl]carbamoyl}propyl]carbamoyl}propyl]carbamoyl}-4-(N-hydroxyformamido)butyl]carbamoyl}-3,4,5,6-tetrahydropyrimidin-2-yl]-2-hydroxyethyl]carbamoyl}-5-(3-carboxypropanamido)-8,9-dihydroxy-1H,2H,3H,4H-11alambda5-pyrimido[1,2-a]quinolin-11a-ylium
CAS Registry NumberNot Available
SMILES
NC(=O)CCC(NC(=O)C(CCCN(O)C=O)NC(=O)C1CCN=C(N1)C(CO)NC(=O)[C@@H]1CCNC2=C(NC(=O)CCC(O)=O)C=C3C=C(O)C(O)=CC3=[N+]12)C(=O)NC(CCC(N)=O)C(=O)NC(CCCN(O)C=O)C(=O)NCC(O)=O
InChI Identifier
InChI=1S/C48H67N15O20/c49-36(69)7-5-27(45(78)56-25(3-1-15-61(82)22-65)43(76)53-20-40(74)75)59-46(79)28(6-8-37(50)70)58-44(77)26(4-2-16-62(83)23-66)57-47(80)29-11-13-51-41(55-29)31(21-64)60-48(81)32-12-14-52-42-30(54-38(71)9-10-39(72)73)17-24-18-34(67)35(68)19-33(24)63(32)42/h17-19,22-23,25-29,31-32,64,82-83H,1-16,20-21H2,(H16,49,50,51,52,53,54,55,56,57,58,59,60,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81)/p+1/t25?,26?,27?,28?,29?,31?,32-/m0/s1
InChI KeyNTMRGNGSPRGFGC-RAVWKCBISA-O
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
PseudomonasNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1ALOGPS
logP-16ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)2.95ChemAxon
pKa (Strongest Basic)6.74ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count23ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area546.55 ŲChemAxon
Rotatable Bond Count33ChemAxon
Refractivity281.59 m³·mol⁻¹ChemAxon
Polarizability118.78 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA014047
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78443814
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139586998
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Cornelis P, Hohnadel D, Meyer JM: Evidence for different pyoverdine-mediated iron uptake systems among Pseudomonas aeruginosa strains. Infect Immun. 1989 Nov;57(11):3491-7. doi: 10.1128/IAI.57.11.3491-3497.1989. [PubMed:2509364 ]