NP-MRD: Showing NP-Card for Lynamicin F (NP0013116)

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Record Information

Version

2.0

Created at

2021-01-05 22:34:44 UTC

Updated at

2021-07-15 17:13:37 UTC

NP-MRD ID

NP0013116

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Lynamicin F

Provided By

NPAtlas

Description

Lynamicin F is found in Streptomyces. Based on a literature review very few articles have been published on Lynamicin F.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242119333D          

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     RDKit          3D

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 12 37  1  0  0  0  0
 15 38  1  0  0  0  0
 19 39  1  0  0  0  0
 20 40  1  0  0  0  0
 22 41  1  0  0  0  0
 23 42  1  0  0  0  0
 26 43  1  0  0  0  0
 28 44  1  0  0  0  0
 30 45  1  0  0  0  0
 30 46  1  0  0  0  0
 30 47  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0013116

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N1C([H])=C(C2=C([H])N(C(C(=O)OC([H])([H])[H])=C2C2=C([H])N([H])C3=C([H])C([H])=C(Cl)C([H])=C23)C([H])([H])[H])C2=C([H])C(Cl)=C([H])C([H])=C12

> <INCHI_IDENTIFIER>
InChI=1S/C23H17Cl2N3O2/c1-28-11-18(16-9-26-19-5-3-12(24)7-14(16)19)21(22(28)23(29)30-2)17-10-27-20-6-4-13(25)8-15(17)20/h3-11,26-27H,1-2H3

> <INCHI_KEY>
WTHPKNLNQHMHLV-UHFFFAOYSA-N

> <FORMULA>
C23H17Cl2N3O2

> <MOLECULAR_WEIGHT>
438.31

> <EXACT_MASS>
437.0697822

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
47

> <JCHEM_AVERAGE_POLARIZABILITY>
45.655104759016254

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl 3,4-bis(5-chloro-1H-indol-3-yl)-1-methyl-1H-pyrrole-2-carboxylate

> <ALOGPS_LOGP>
5.81

> <JCHEM_LOGP>
5.9003481446666655

> <ALOGPS_LOGS>
-5.79

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.610084622713018

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.911368375949408

> <JCHEM_PKA_STRONGEST_BASIC>
-7.136661030941051

> <JCHEM_POLAR_SURFACE_AREA>
62.81

> <JCHEM_REFRACTIVITY>
119.6713

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.08e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl 3,4-bis(5-chloro-1H-indol-3-yl)-1-methylpyrrole-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 47 51  0  0  0  0  0  0  0  0999 V2000
   -3.5260   -4.3376   -1.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3494   -3.6164   -1.3334 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0148   -2.5015   -0.6060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7500   -2.1093    0.3147 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7964   -1.7800   -0.9158 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3274   -0.6434   -0.2767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0203    0.0030    0.8285 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0176   -0.4036    2.1471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7787    0.4444    2.8568 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2910    1.4051    2.0563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1178    2.4903    2.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4953    3.3268    1.2556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0339    3.0682   -0.0121 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5224    4.1373   -1.2932 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -2.2066    1.9858   -0.2448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8129    1.1275    0.7756 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8479   -0.2705   -0.8576 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7030    0.8751   -0.5077 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3954    2.2078   -0.6524 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4497    2.9525   -0.2090 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4334    2.1546    0.2192 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6927    2.4177    0.7555 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4731    1.3347    1.0994 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0542    0.0333    0.9331 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0820   -1.3176    1.3859 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    3.7976   -0.2063    0.3982 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9709    0.8490    0.0347 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0943   -1.1970   -1.8653 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0938   -2.0833   -1.8723 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0583   -3.2362   -2.7718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1986   -4.2896   -1.9242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3360   -5.4033   -0.8119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0340   -3.8767   -0.1763 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5016   -1.2631    2.5952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9588    0.3828    3.8823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4623    2.6633    3.2957 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1543    4.1799    1.4705 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8448    1.7856   -1.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4845    2.6044   -1.0484 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4919    3.9890   -0.2018 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9966    3.4482    0.8747 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4579    1.5347    1.5169 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4395   -1.2143    0.2554 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9614   -1.1529   -2.4982 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8749   -3.3084   -3.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9650   -3.0552   -3.3558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2208   -4.1345   -2.1347 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 13 15  1  0
 15 16  2  0
  6 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 24 26  1  0
 26 27  2  0
 17 28  2  0
 28 29  1  0
 29 30  1  0
 29  5  1  0
 16  7  1  0
 27 18  1  0
 16 10  1  0
 27 21  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  8 34  1  0
  9 35  1  0
 11 36  1  0
 12 37  1  0
 15 38  1  0
 19 39  1  0
 20 40  1  0
 22 41  1  0
 23 42  1  0
 26 43  1  0
 28 44  1  0
 30 45  1  0
 30 46  1  0
 30 47  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.526  -4.338  -1.055  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.349  -3.616  -1.333  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.015  -2.502  -0.606  0.00  0.00           C+0
HETATM    4  O   UNK     0      -2.750  -2.109   0.315  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.796  -1.780  -0.916  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.327  -0.643  -0.277  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.020   0.003   0.829  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.018  -0.404   2.147  0.00  0.00           C+0
HETATM    9  N   UNK     0      -1.779   0.444   2.857  0.00  0.00           N+0
HETATM   10  C   UNK     0      -2.291   1.405   2.056  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.118   2.490   2.279  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.495   3.327   1.256  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.034   3.068  -0.012  0.00  0.00           C+0
HETATM   14 Cl   UNK     0      -3.522   4.137  -1.293  0.00  0.00          Cl+0
HETATM   15  C   UNK     0      -2.207   1.986  -0.245  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.813   1.127   0.776  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.848  -0.271  -0.858  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.703   0.875  -0.508  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.395   2.208  -0.652  0.00  0.00           C+0
HETATM   20  N   UNK     0       2.450   2.953  -0.209  0.00  0.00           N+0
HETATM   21  C   UNK     0       3.433   2.155   0.219  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.693   2.418   0.756  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.473   1.335   1.099  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.054   0.033   0.933  0.00  0.00           C+0
HETATM   25 Cl   UNK     0       6.082  -1.318   1.386  0.00  0.00          Cl+0
HETATM   26  C   UNK     0       3.798  -0.206   0.398  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.971   0.849   0.035  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.094  -1.197  -1.865  0.00  0.00           C+0
HETATM   29  N   UNK     0       0.094  -2.083  -1.872  0.00  0.00           N+0
HETATM   30  C   UNK     0      -0.058  -3.236  -2.772  0.00  0.00           C+0
HETATM   31  H   UNK     0      -4.199  -4.290  -1.924  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.336  -5.403  -0.812  0.00  0.00           H+0
HETATM   33  H   UNK     0      -4.034  -3.877  -0.176  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.502  -1.263   2.595  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.959   0.383   3.882  0.00  0.00           H+0
HETATM   36  H   UNK     0      -3.462   2.663   3.296  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.154   4.180   1.470  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.845   1.786  -1.252  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.485   2.604  -1.048  0.00  0.00           H+0
HETATM   40  H   UNK     0       2.492   3.989  -0.202  0.00  0.00           H+0
HETATM   41  H   UNK     0       4.997   3.448   0.875  0.00  0.00           H+0
HETATM   42  H   UNK     0       6.458   1.535   1.517  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.439  -1.214   0.255  0.00  0.00           H+0
HETATM   44  H   UNK     0       1.961  -1.153  -2.498  0.00  0.00           H+0
HETATM   45  H   UNK     0       0.875  -3.308  -3.354  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.965  -3.055  -3.356  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.221  -4.135  -2.135  0.00  0.00           H+0
CONECT    1    2   31   32   33                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   29                                                  
CONECT    6    5    7   17                                                  
CONECT    7    6    8   16                                                  
CONECT    8    7    9   34                                                  
CONECT    9    8   10   35                                                  
CONECT   10    9   11   16                                                  
CONECT   11   10   12   36                                                  
CONECT   12   11   13   37                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   38                                                  
CONECT   16   15    7   10                                                  
CONECT   17    6   18   28                                                  
CONECT   18   17   19   27                                                  
CONECT   19   18   20   39                                                  
CONECT   20   19   21   40                                                  
CONECT   21   20   22   27                                                  
CONECT   22   21   23   41                                                  
CONECT   23   22   24   42                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   43                                                  
CONECT   27   26   18   21                                                  
CONECT   28   17   29   44                                                  
CONECT   29   28   30    5                                                  
CONECT   30   29   45   46   47                                             
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    8                                                            
CONECT   35    9                                                            
CONECT   36   11                                                            
CONECT   37   12                                                            
CONECT   38   15                                                            
CONECT   39   19                                                            
CONECT   40   20                                                            
CONECT   41   22                                                            
CONECT   42   23                                                            
CONECT   43   26                                                            
CONECT   44   28                                                            
CONECT   45   30                                                            
CONECT   46   30                                                            
CONECT   47   30                                                            
MASTER        0    0    0    0    0    0    0    0   47    0  102    0
END

RDKit          3D

47 51  0  0  0  0  0  0  0  0999 V2000
   -3.5260   -4.3376   -1.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3494   -3.6164   -1.3334 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0148   -2.5015   -0.6060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7500   -2.1093    0.3147 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7964   -1.7800   -0.9158 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3274   -0.6434   -0.2767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0203    0.0030    0.8285 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0176   -0.4036    2.1471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7787    0.4444    2.8568 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2910    1.4051    2.0563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1178    2.4903    2.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4953    3.3268    1.2556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0339    3.0682   -0.0121 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5224    4.1373   -1.2932 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -2.2066    1.9858   -0.2448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8129    1.1275    0.7756 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8479   -0.2705   -0.8576 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7030    0.8751   -0.5077 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3954    2.2078   -0.6524 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4497    2.9525   -0.2090 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4334    2.1546    0.2192 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6927    2.4177    0.7555 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4731    1.3347    1.0994 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0542    0.0333    0.9331 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0820   -1.3176    1.3859 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    3.7976   -0.2063    0.3982 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9709    0.8490    0.0347 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0943   -1.1970   -1.8653 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0938   -2.0833   -1.8723 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0583   -3.2362   -2.7718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1986   -4.2896   -1.9242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3360   -5.4033   -0.8119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0340   -3.8767   -0.1763 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5016   -1.2631    2.5952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9588    0.3828    3.8823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4623    2.6633    3.2957 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1543    4.1799    1.4705 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8448    1.7856   -1.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4845    2.6044   -1.0484 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4919    3.9890   -0.2018 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9966    3.4482    0.8747 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4579    1.5347    1.5169 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4395   -1.2143    0.2554 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9614   -1.1529   -2.4982 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8749   -3.3084   -3.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9650   -3.0552   -3.3558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2208   -4.1345   -2.1347 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 13 15  1  0
 15 16  2  0
  6 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 24 26  1  0
 26 27  2  0
 17 28  2  0
 28 29  1  0
 29 30  1  0
 29  5  1  0
 16  7  1  0
 27 18  1  0
 16 10  1  0
 27 21  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  8 34  1  0
  9 35  1  0
 11 36  1  0
 12 37  1  0
 15 38  1  0
 19 39  1  0
 20 40  1  0
 22 41  1  0
 23 42  1  0
 26 43  1  0
 28 44  1  0
 30 45  1  0
 30 46  1  0
 30 47  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₃H₁₇Cl₂N₃O₂

Average Mass

438.3100 Da

Monoisotopic Mass

437.06978 Da

IUPAC Name

methyl 3,4-bis(5-chloro-1H-indol-3-yl)-1-methyl-1H-pyrrole-2-carboxylate

Traditional Name

methyl 3,4-bis(5-chloro-1H-indol-3-yl)-1-methylpyrrole-2-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C(C(=CN1C)C1=CNC2=C1C=C(Cl)C=C2)C1=CNC2=C1C=C(Cl)C=C2

InChI Identifier

InChI=1S/C23H17Cl2N3O2/c1-28-11-18(16-9-26-19-5-3-12(24)7-14(16)19)21(22(28)23(29)30-2)17-10-27-20-6-4-13(25)8-15(17)20/h3-11,26-27H,1-2H3

InChI Key

WTHPKNLNQHMHLV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	25069084

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.81	ALOGPS
logP	5.9	ChemAxon
logS	-5.8	ALOGPS
pKa (Strongest Acidic)	14.91	ChemAxon
pKa (Strongest Basic)	-7.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	62.81 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	119.67 m³·mol⁻¹	ChemAxon
Polarizability	45.66 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA001636

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

58113770

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

118711964

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Lynamicin F (NP0013116)

MOL for NP0013116 (Lynamicin F)

3D MOL for NP0013116 (Lynamicin F)

3D SDF for NP0013116 (Lynamicin F)

3D-SDF for NP0013116 (Lynamicin F)

PDB for NP0013116 (Lynamicin F)

3D PDB for NP0013116 (Lynamicin F)

SMILES for NP0013116 (Lynamicin F)

INCHI for NP0013116 (Lynamicin F)

Structure for NP0013116 (Lynamicin F)

3D Structure for NP0013116 (Lynamicin F)