Showing NP-Card for Pacidamycin 3 (NP0012999)
| Record Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Version | 2.0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Created at | 2021-01-05 22:30:23 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Updated at | 2021-07-15 17:13:18 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NP-MRD ID | NP0012999 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Secondary Accession Numbers | None | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Natural Product Identification | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Common Name | Pacidamycin 3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Provided By | NPAtlas![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description | Pacidamycin 3 is found in Streptomyces coeruleorubidus. Based on a literature review very few articles have been published on (2S)-2-({[(1S)-1-{[(1S,2S)-2-[(2S)-2-{[(2S)-2-amino-1-hydroxypropylidene]amino}-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2Z,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}amino)-3-(3-hydroxyphenyl)propanoic acid. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Structure | MOL for NP0012999 (Pacidamycin 3)
Mrv1652307042106553D
110113 0 0 0 0 999 V2000
-7.7853 -2.2201 -0.9393 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.6225 -1.6702 -1.7556 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.4315 -2.5071 -2.9183 N 0 0 1 0 0 0 0 0 0 0 0 0
-5.4275 -1.6256 -0.8856 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4450 -0.9863 0.1919 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.2654 -2.3038 -1.2664 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.0175 -2.3366 -0.4809 C 0 0 1 0 0 0 0 0 0 0 0 0
-2.6017 -3.7106 -0.1586 C 0 0 2 0 0 0 0 0 0 0 0 0
-3.7319 -4.3283 0.6468 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7473 -5.0429 0.0729 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7588 -5.5776 0.8314 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7834 -5.4106 2.1976 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7578 -4.6883 2.7803 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7651 -4.5110 4.1460 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.7363 -4.1483 2.0118 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.0473 -1.3901 -1.0253 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5628 -0.3061 -1.5463 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6586 -1.4370 -1.0877 N 0 0 0 0 0 0 0 0 0 0 0 0
0.1170 -2.6088 -0.7011 C 0 0 0 0 0 0 0 0 0 0 0 0
0.1382 -0.2659 -1.4714 C 0 0 1 0 0 0 0 0 0 0 0 0
-0.2198 0.3553 -2.7550 C 0 0 0 0 0 0 0 0 0 0 0 0
0.2554 0.7513 -0.3377 C 0 0 2 0 0 0 0 0 0 0 0 0
0.9494 0.0976 0.7908 N 0 0 0 0 0 0 0 0 0 0 0 0
2.2900 0.3774 1.1212 C 0 0 0 0 0 0 0 0 0 0 0 0
2.9573 1.2135 0.4474 O 0 0 0 0 0 0 0 0 0 0 0 0
2.9367 -0.3188 2.2763 C 0 0 2 0 0 0 0 0 0 0 0 0
2.2039 -0.0291 3.5581 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3238 0.0950 2.3706 N 0 0 0 0 0 0 0 0 0 0 0 0
5.3377 -0.8235 2.0444 C 0 0 0 0 0 0 0 0 0 0 0 0
5.0465 -1.9880 1.6862 O 0 0 0 0 0 0 0 0 0 0 0 0
6.6962 -0.4436 2.1143 N 0 0 0 0 0 0 0 0 0 0 0 0
7.7363 -1.4299 1.7567 C 0 0 1 0 0 0 0 0 0 0 0 0
8.3349 -0.9877 0.4241 C 0 0 2 0 0 0 0 0 0 0 0 0
9.3740 -1.9375 0.0182 C 0 0 0 0 0 0 0 0 0 0 0 0
9.0221 -3.0886 -0.6717 C 0 0 0 0 0 0 0 0 0 0 0 0
10.0073 -3.9581 -1.0705 C 0 0 0 0 0 0 0 0 0 0 0 0
11.3435 -3.7205 -0.8055 C 0 0 0 0 0 0 0 0 0 0 0 0
11.6940 -2.5859 -0.1260 C 0 0 0 0 0 0 0 0 0 0 0 0
13.0279 -2.3169 0.1563 O 0 0 0 0 0 0 0 0 0 0 0 0
10.6982 -1.7083 0.2775 C 0 0 0 0 0 0 0 0 0 0 0 0
8.7314 -1.4391 2.8234 C 0 0 0 0 0 0 0 0 0 0 0 0
8.6505 -0.6762 3.8100 O 0 0 0 0 0 0 0 0 0 0 0 0
9.8084 -2.3115 2.7724 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.0149 1.2984 0.1298 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.6049 0.7342 1.1340 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.6630 2.4081 -0.4231 N 0 0 0 0 0 0 0 0 0 0 0 0
-2.9050 2.8486 0.1147 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.5687 3.8831 -0.3454 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.8748 4.4287 0.1403 C 0 0 2 0 0 0 0 0 0 0 0 0
-4.7251 5.8982 -0.0590 C 0 0 1 0 0 0 0 0 0 0 0 0
-4.3999 6.4745 1.1840 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.5536 6.0707 -0.9688 C 0 0 2 0 0 0 0 0 0 0 0 0
-3.7273 7.0026 -2.0297 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.6257 8.3193 -1.6792 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.7669 9.3467 -2.5698 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0278 9.0014 -3.9012 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.1552 9.9524 -4.7131 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.1208 7.7129 -4.2120 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.9769 6.7149 -3.3118 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0675 5.4951 -3.6207 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.2341 4.7399 -1.3956 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.7095 -2.3308 -1.5077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0048 -1.5489 -0.0780 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4374 -3.1956 -0.5016 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8697 -0.6299 -2.1050 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.8001 -2.0362 -3.6054 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1130 -3.4498 -2.6447 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.2307 -2.8400 -2.1590 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3728 -1.8827 0.5186 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.7599 -3.7119 0.5465 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.4789 -4.3771 -1.0356 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7465 -5.1922 -1.0139 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5587 -6.1342 0.3749 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5919 -5.8363 2.8125 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.0424 -3.9883 4.6327 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.9510 -3.5800 2.5448 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.2419 -3.5427 -1.2080 H 0 0 0 0 0 0 0 0 0 0 0 0
0.2791 -2.7205 0.3669 H 0 0 0 0 0 0 0 0 0 0 0 0
1.1720 -2.4994 -1.1418 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2239 -0.6516 -1.5496 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.9786 1.1468 -2.7393 H 0 0 0 0 0 0 0 0 0 0 0 0
0.7274 0.7274 -3.2366 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.5279 -0.4844 -3.4515 H 0 0 0 0 0 0 0 0 0 0 0 0
0.9157 1.5398 -0.7005 H 0 0 0 0 0 0 0 0 0 0 0 0
0.4095 -0.5791 1.3417 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8460 -1.4018 2.0417 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2842 -0.6772 3.5925 H 0 0 0 0 0 0 0 0 0 0 0 0
1.8200 1.0304 3.5436 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8324 -0.1679 4.4482 H 0 0 0 0 0 0 0 0 0 0 0 0
4.5576 1.0480 2.6707 H 0 0 0 0 0 0 0 0 0 0 0 0
7.0576 0.4746 2.3963 H 0 0 0 0 0 0 0 0 0 0 0 0
7.2121 -2.3969 1.5848 H 0 0 0 0 0 0 0 0 0 0 0 0
8.7155 0.0508 0.5430 H 0 0 0 0 0 0 0 0 0 0 0 0
7.4893 -0.9682 -0.3113 H 0 0 0 0 0 0 0 0 0 0 0 0
7.9900 -3.2653 -0.8741 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7286 -4.8559 -1.6113 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0806 -4.4504 -1.1492 H 0 0 0 0 0 0 0 0 0 0 0 0
13.3141 -1.4794 0.6586 H 0 0 0 0 0 0 0 0 0 0 0 0
10.9889 -0.8206 0.8060 H 0 0 0 0 0 0 0 0 0 0 0 0
10.6718 -2.1568 3.2498 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.2388 2.9186 -1.2182 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3240 2.2863 0.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0528 4.2268 1.2112 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6898 3.9859 -0.4780 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6231 6.3870 -0.4920 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.2139 6.8139 1.6381 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.6437 6.3907 -0.3760 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.4216 8.5853 -0.6335 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.6793 10.3833 -2.2508 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.3166 7.4753 -5.2133 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 1 0 0 0 0
2 4 1 0 0 0 0
4 5 2 0 0 0 0
4 6 1 0 0 0 0
6 7 1 0 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
9 10 2 0 0 0 0
10 11 1 0 0 0 0
11 12 2 0 0 0 0
12 13 1 0 0 0 0
13 14 1 0 0 0 0
13 15 2 0 0 0 0
7 16 1 0 0 0 0
16 17 2 0 0 0 0
16 18 1 0 0 0 0
18 19 1 0 0 0 0
18 20 1 0 0 0 0
20 21 1 0 0 0 0
20 22 1 0 0 0 0
22 23 1 0 0 0 0
23 24 1 0 0 0 0
24 25 2 0 0 0 0
24 26 1 0 0 0 0
26 27 1 0 0 0 0
26 28 1 0 0 0 0
28 29 1 0 0 0 0
29 30 2 0 0 0 0
29 31 1 0 0 0 0
31 32 1 0 0 0 0
32 33 1 0 0 0 0
33 34 1 0 0 0 0
34 35 2 0 0 0 0
35 36 1 0 0 0 0
36 37 2 0 0 0 0
37 38 1 0 0 0 0
38 39 1 0 0 0 0
38 40 2 0 0 0 0
32 41 1 0 0 0 0
41 42 2 0 0 0 0
41 43 1 0 0 0 0
22 44 1 0 0 0 0
44 45 2 0 0 0 0
44 46 1 0 0 0 0
46 47 1 0 0 0 0
47 48 2 0 0 0 0
48 49 1 0 0 0 0
49 50 1 0 0 0 0
50 51 1 0 0 0 0
50 52 1 0 0 0 0
52 53 1 0 0 0 0
53 54 1 0 0 0 0
54 55 2 0 0 0 0
55 56 1 0 0 0 0
56 57 2 0 0 0 0
56 58 1 0 0 0 0
58 59 1 0 0 0 0
59 60 2 0 0 0 0
52 61 1 0 0 0 0
15 9 1 0 0 0 0
40 34 1 0 0 0 0
61 48 1 0 0 0 0
59 53 1 0 0 0 0
1 62 1 0 0 0 0
1 63 1 0 0 0 0
1 64 1 0 0 0 0
2 65 1 6 0 0 0
3 66 1 0 0 0 0
3 67 1 0 0 0 0
6 68 1 0 0 0 0
7 69 1 1 0 0 0
8 70 1 0 0 0 0
8 71 1 0 0 0 0
10 72 1 0 0 0 0
11 73 1 0 0 0 0
12 74 1 0 0 0 0
14 75 1 0 0 0 0
15 76 1 0 0 0 0
19 77 1 0 0 0 0
19 78 1 0 0 0 0
19 79 1 0 0 0 0
20 80 1 6 0 0 0
21 81 1 0 0 0 0
21 82 1 0 0 0 0
21 83 1 0 0 0 0
22 84 1 6 0 0 0
23 85 1 0 0 0 0
26 86 1 6 0 0 0
27 87 1 0 0 0 0
27 88 1 0 0 0 0
27 89 1 0 0 0 0
28 90 1 0 0 0 0
31 91 1 0 0 0 0
32 92 1 6 0 0 0
33 93 1 0 0 0 0
33 94 1 0 0 0 0
35 95 1 0 0 0 0
36 96 1 0 0 0 0
37 97 1 0 0 0 0
39 98 1 0 0 0 0
40 99 1 0 0 0 0
43100 1 0 0 0 0
46101 1 0 0 0 0
47102 1 0 0 0 0
49103 1 0 0 0 0
49104 1 0 0 0 0
50105 1 6 0 0 0
51106 1 0 0 0 0
52107 1 1 0 0 0
54108 1 0 0 0 0
55109 1 0 0 0 0
58110 1 0 0 0 0
M END
3D MOL for NP0012999 (Pacidamycin 3)
RDKit 3D
110113 0 0 0 0 0 0 0 0999 V2000
-7.7853 -2.2201 -0.9393 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.6225 -1.6702 -1.7556 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.4315 -2.5071 -2.9183 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.4275 -1.6256 -0.8856 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4450 -0.9863 0.1919 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.2654 -2.3038 -1.2664 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.0175 -2.3366 -0.4809 C 0 0 1 0 0 0 0 0 0 0 0 0
-2.6017 -3.7106 -0.1586 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.7319 -4.3283 0.6468 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7473 -5.0429 0.0729 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7588 -5.5776 0.8314 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7834 -5.4106 2.1976 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7578 -4.6883 2.7803 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7651 -4.5110 4.1460 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.7363 -4.1483 2.0118 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.0473 -1.3901 -1.0253 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5628 -0.3061 -1.5463 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6586 -1.4370 -1.0877 N 0 0 0 0 0 0 0 0 0 0 0 0
0.1170 -2.6088 -0.7011 C 0 0 0 0 0 0 0 0 0 0 0 0
0.1382 -0.2659 -1.4714 C 0 0 1 0 0 0 0 0 0 0 0 0
-0.2198 0.3553 -2.7550 C 0 0 0 0 0 0 0 0 0 0 0 0
0.2554 0.7513 -0.3377 C 0 0 2 0 0 0 0 0 0 0 0 0
0.9494 0.0976 0.7908 N 0 0 0 0 0 0 0 0 0 0 0 0
2.2900 0.3774 1.1212 C 0 0 0 0 0 0 0 0 0 0 0 0
2.9573 1.2135 0.4474 O 0 0 0 0 0 0 0 0 0 0 0 0
2.9367 -0.3188 2.2763 C 0 0 2 0 0 0 0 0 0 0 0 0
2.2039 -0.0291 3.5581 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3238 0.0950 2.3706 N 0 0 0 0 0 0 0 0 0 0 0 0
5.3377 -0.8235 2.0444 C 0 0 0 0 0 0 0 0 0 0 0 0
5.0465 -1.9880 1.6862 O 0 0 0 0 0 0 0 0 0 0 0 0
6.6962 -0.4436 2.1143 N 0 0 0 0 0 0 0 0 0 0 0 0
7.7363 -1.4299 1.7567 C 0 0 1 0 0 0 0 0 0 0 0 0
8.3349 -0.9877 0.4241 C 0 0 0 0 0 0 0 0 0 0 0 0
9.3740 -1.9375 0.0182 C 0 0 0 0 0 0 0 0 0 0 0 0
9.0221 -3.0886 -0.6717 C 0 0 0 0 0 0 0 0 0 0 0 0
10.0073 -3.9581 -1.0705 C 0 0 0 0 0 0 0 0 0 0 0 0
11.3435 -3.7205 -0.8055 C 0 0 0 0 0 0 0 0 0 0 0 0
11.6940 -2.5859 -0.1260 C 0 0 0 0 0 0 0 0 0 0 0 0
13.0279 -2.3169 0.1563 O 0 0 0 0 0 0 0 0 0 0 0 0
10.6982 -1.7083 0.2775 C 0 0 0 0 0 0 0 0 0 0 0 0
8.7314 -1.4391 2.8234 C 0 0 0 0 0 0 0 0 0 0 0 0
8.6505 -0.6762 3.8100 O 0 0 0 0 0 0 0 0 0 0 0 0
9.8084 -2.3115 2.7724 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.0149 1.2984 0.1298 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.6049 0.7342 1.1340 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.6630 2.4081 -0.4231 N 0 0 0 0 0 0 0 0 0 0 0 0
-2.9050 2.8486 0.1147 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.5687 3.8831 -0.3454 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.8748 4.4287 0.1403 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7251 5.8982 -0.0590 C 0 0 1 0 0 0 0 0 0 0 0 0
-4.3999 6.4745 1.1840 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.5536 6.0707 -0.9688 C 0 0 2 0 0 0 0 0 0 0 0 0
-3.7273 7.0026 -2.0297 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.6257 8.3193 -1.6792 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.7669 9.3467 -2.5698 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0278 9.0014 -3.9012 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.1552 9.9524 -4.7131 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.1208 7.7129 -4.2120 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.9769 6.7149 -3.3118 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0675 5.4951 -3.6207 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.2341 4.7399 -1.3956 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.7095 -2.3308 -1.5077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0048 -1.5489 -0.0780 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4374 -3.1956 -0.5016 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8697 -0.6299 -2.1050 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.8001 -2.0362 -3.6054 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1130 -3.4498 -2.6447 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.2307 -2.8400 -2.1590 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3728 -1.8827 0.5186 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.7599 -3.7119 0.5465 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.4789 -4.3771 -1.0356 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7465 -5.1922 -1.0139 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5587 -6.1342 0.3749 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5919 -5.8363 2.8125 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.0424 -3.9883 4.6327 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.9510 -3.5800 2.5448 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.2419 -3.5427 -1.2080 H 0 0 0 0 0 0 0 0 0 0 0 0
0.2791 -2.7205 0.3669 H 0 0 0 0 0 0 0 0 0 0 0 0
1.1720 -2.4994 -1.1418 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2239 -0.6516 -1.5496 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.9786 1.1468 -2.7393 H 0 0 0 0 0 0 0 0 0 0 0 0
0.7274 0.7274 -3.2366 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.5279 -0.4844 -3.4515 H 0 0 0 0 0 0 0 0 0 0 0 0
0.9157 1.5398 -0.7005 H 0 0 0 0 0 0 0 0 0 0 0 0
0.4095 -0.5791 1.3417 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8460 -1.4018 2.0417 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2842 -0.6772 3.5925 H 0 0 0 0 0 0 0 0 0 0 0 0
1.8200 1.0304 3.5436 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8324 -0.1679 4.4482 H 0 0 0 0 0 0 0 0 0 0 0 0
4.5576 1.0480 2.6707 H 0 0 0 0 0 0 0 0 0 0 0 0
7.0576 0.4746 2.3963 H 0 0 0 0 0 0 0 0 0 0 0 0
7.2121 -2.3969 1.5848 H 0 0 0 0 0 0 0 0 0 0 0 0
8.7155 0.0508 0.5430 H 0 0 0 0 0 0 0 0 0 0 0 0
7.4893 -0.9682 -0.3113 H 0 0 0 0 0 0 0 0 0 0 0 0
7.9900 -3.2653 -0.8741 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7286 -4.8559 -1.6113 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0806 -4.4504 -1.1492 H 0 0 0 0 0 0 0 0 0 0 0 0
13.3141 -1.4794 0.6586 H 0 0 0 0 0 0 0 0 0 0 0 0
10.9889 -0.8206 0.8060 H 0 0 0 0 0 0 0 0 0 0 0 0
10.6718 -2.1568 3.2498 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.2388 2.9186 -1.2182 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3240 2.2863 0.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0528 4.2268 1.2112 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6898 3.9859 -0.4780 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6231 6.3870 -0.4920 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.2139 6.8139 1.6381 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.6437 6.3907 -0.3760 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.4216 8.5853 -0.6335 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.6793 10.3833 -2.2508 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.3166 7.4753 -5.2133 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0
2 3 1 0
2 4 1 0
4 5 2 0
4 6 1 0
6 7 1 0
7 8 1 0
8 9 1 0
9 10 2 0
10 11 1 0
11 12 2 0
12 13 1 0
13 14 1 0
13 15 2 0
7 16 1 0
16 17 2 0
16 18 1 0
18 19 1 0
18 20 1 0
20 21 1 0
20 22 1 0
22 23 1 0
23 24 1 0
24 25 2 0
24 26 1 0
26 27 1 0
26 28 1 0
28 29 1 0
29 30 2 0
29 31 1 0
31 32 1 0
32 33 1 0
33 34 1 0
34 35 2 0
35 36 1 0
36 37 2 0
37 38 1 0
38 39 1 0
38 40 2 0
32 41 1 0
41 42 2 0
41 43 1 0
22 44 1 0
44 45 2 0
44 46 1 0
46 47 1 0
47 48 2 0
48 49 1 0
49 50 1 0
50 51 1 0
50 52 1 0
52 53 1 0
53 54 1 0
54 55 2 0
55 56 1 0
56 57 2 0
56 58 1 0
58 59 1 0
59 60 2 0
52 61 1 0
15 9 1 0
40 34 1 0
61 48 1 0
59 53 1 0
1 62 1 0
1 63 1 0
1 64 1 0
2 65 1 6
3 66 1 0
3 67 1 0
6 68 1 0
7 69 1 1
8 70 1 0
8 71 1 0
10 72 1 0
11 73 1 0
12 74 1 0
14 75 1 0
15 76 1 0
19 77 1 0
19 78 1 0
19 79 1 0
20 80 1 6
21 81 1 0
21 82 1 0
21 83 1 0
22 84 1 6
23 85 1 0
26 86 1 6
27 87 1 0
27 88 1 0
27 89 1 0
28 90 1 0
31 91 1 0
32 92 1 6
33 93 1 0
33 94 1 0
35 95 1 0
36 96 1 0
37 97 1 0
39 98 1 0
40 99 1 0
43100 1 0
46101 1 0
47102 1 0
49103 1 0
49104 1 0
50105 1 6
51106 1 0
52107 1 1
54108 1 0
55109 1 0
58110 1 0
M END
3D SDF for NP0012999 (Pacidamycin 3)
Mrv1652307042106553D
110113 0 0 0 0 999 V2000
-7.7853 -2.2201 -0.9393 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.6225 -1.6702 -1.7556 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.4315 -2.5071 -2.9183 N 0 0 1 0 0 0 0 0 0 0 0 0
-5.4275 -1.6256 -0.8856 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4450 -0.9863 0.1919 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.2654 -2.3038 -1.2664 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.0175 -2.3366 -0.4809 C 0 0 1 0 0 0 0 0 0 0 0 0
-2.6017 -3.7106 -0.1586 C 0 0 2 0 0 0 0 0 0 0 0 0
-3.7319 -4.3283 0.6468 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7473 -5.0429 0.0729 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7588 -5.5776 0.8314 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7834 -5.4106 2.1976 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7578 -4.6883 2.7803 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7651 -4.5110 4.1460 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.7363 -4.1483 2.0118 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.0473 -1.3901 -1.0253 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5628 -0.3061 -1.5463 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6586 -1.4370 -1.0877 N 0 0 0 0 0 0 0 0 0 0 0 0
0.1170 -2.6088 -0.7011 C 0 0 0 0 0 0 0 0 0 0 0 0
0.1382 -0.2659 -1.4714 C 0 0 1 0 0 0 0 0 0 0 0 0
-0.2198 0.3553 -2.7550 C 0 0 0 0 0 0 0 0 0 0 0 0
0.2554 0.7513 -0.3377 C 0 0 2 0 0 0 0 0 0 0 0 0
0.9494 0.0976 0.7908 N 0 0 0 0 0 0 0 0 0 0 0 0
2.2900 0.3774 1.1212 C 0 0 0 0 0 0 0 0 0 0 0 0
2.9573 1.2135 0.4474 O 0 0 0 0 0 0 0 0 0 0 0 0
2.9367 -0.3188 2.2763 C 0 0 2 0 0 0 0 0 0 0 0 0
2.2039 -0.0291 3.5581 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3238 0.0950 2.3706 N 0 0 0 0 0 0 0 0 0 0 0 0
5.3377 -0.8235 2.0444 C 0 0 0 0 0 0 0 0 0 0 0 0
5.0465 -1.9880 1.6862 O 0 0 0 0 0 0 0 0 0 0 0 0
6.6962 -0.4436 2.1143 N 0 0 0 0 0 0 0 0 0 0 0 0
7.7363 -1.4299 1.7567 C 0 0 1 0 0 0 0 0 0 0 0 0
8.3349 -0.9877 0.4241 C 0 0 2 0 0 0 0 0 0 0 0 0
9.3740 -1.9375 0.0182 C 0 0 0 0 0 0 0 0 0 0 0 0
9.0221 -3.0886 -0.6717 C 0 0 0 0 0 0 0 0 0 0 0 0
10.0073 -3.9581 -1.0705 C 0 0 0 0 0 0 0 0 0 0 0 0
11.3435 -3.7205 -0.8055 C 0 0 0 0 0 0 0 0 0 0 0 0
11.6940 -2.5859 -0.1260 C 0 0 0 0 0 0 0 0 0 0 0 0
13.0279 -2.3169 0.1563 O 0 0 0 0 0 0 0 0 0 0 0 0
10.6982 -1.7083 0.2775 C 0 0 0 0 0 0 0 0 0 0 0 0
8.7314 -1.4391 2.8234 C 0 0 0 0 0 0 0 0 0 0 0 0
8.6505 -0.6762 3.8100 O 0 0 0 0 0 0 0 0 0 0 0 0
9.8084 -2.3115 2.7724 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.0149 1.2984 0.1298 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.6049 0.7342 1.1340 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.6630 2.4081 -0.4231 N 0 0 0 0 0 0 0 0 0 0 0 0
-2.9050 2.8486 0.1147 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.5687 3.8831 -0.3454 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.8748 4.4287 0.1403 C 0 0 2 0 0 0 0 0 0 0 0 0
-4.7251 5.8982 -0.0590 C 0 0 1 0 0 0 0 0 0 0 0 0
-4.3999 6.4745 1.1840 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.5536 6.0707 -0.9688 C 0 0 2 0 0 0 0 0 0 0 0 0
-3.7273 7.0026 -2.0297 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.6257 8.3193 -1.6792 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.7669 9.3467 -2.5698 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0278 9.0014 -3.9012 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.1552 9.9524 -4.7131 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.1208 7.7129 -4.2120 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.9769 6.7149 -3.3118 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0675 5.4951 -3.6207 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.2341 4.7399 -1.3956 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.7095 -2.3308 -1.5077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0048 -1.5489 -0.0780 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4374 -3.1956 -0.5016 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8697 -0.6299 -2.1050 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.8001 -2.0362 -3.6054 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1130 -3.4498 -2.6447 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.2307 -2.8400 -2.1590 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3728 -1.8827 0.5186 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.7599 -3.7119 0.5465 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.4789 -4.3771 -1.0356 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7465 -5.1922 -1.0139 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5587 -6.1342 0.3749 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5919 -5.8363 2.8125 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.0424 -3.9883 4.6327 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.9510 -3.5800 2.5448 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.2419 -3.5427 -1.2080 H 0 0 0 0 0 0 0 0 0 0 0 0
0.2791 -2.7205 0.3669 H 0 0 0 0 0 0 0 0 0 0 0 0
1.1720 -2.4994 -1.1418 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2239 -0.6516 -1.5496 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.9786 1.1468 -2.7393 H 0 0 0 0 0 0 0 0 0 0 0 0
0.7274 0.7274 -3.2366 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.5279 -0.4844 -3.4515 H 0 0 0 0 0 0 0 0 0 0 0 0
0.9157 1.5398 -0.7005 H 0 0 0 0 0 0 0 0 0 0 0 0
0.4095 -0.5791 1.3417 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8460 -1.4018 2.0417 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2842 -0.6772 3.5925 H 0 0 0 0 0 0 0 0 0 0 0 0
1.8200 1.0304 3.5436 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8324 -0.1679 4.4482 H 0 0 0 0 0 0 0 0 0 0 0 0
4.5576 1.0480 2.6707 H 0 0 0 0 0 0 0 0 0 0 0 0
7.0576 0.4746 2.3963 H 0 0 0 0 0 0 0 0 0 0 0 0
7.2121 -2.3969 1.5848 H 0 0 0 0 0 0 0 0 0 0 0 0
8.7155 0.0508 0.5430 H 0 0 0 0 0 0 0 0 0 0 0 0
7.4893 -0.9682 -0.3113 H 0 0 0 0 0 0 0 0 0 0 0 0
7.9900 -3.2653 -0.8741 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7286 -4.8559 -1.6113 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0806 -4.4504 -1.1492 H 0 0 0 0 0 0 0 0 0 0 0 0
13.3141 -1.4794 0.6586 H 0 0 0 0 0 0 0 0 0 0 0 0
10.9889 -0.8206 0.8060 H 0 0 0 0 0 0 0 0 0 0 0 0
10.6718 -2.1568 3.2498 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.2388 2.9186 -1.2182 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3240 2.2863 0.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0528 4.2268 1.2112 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6898 3.9859 -0.4780 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6231 6.3870 -0.4920 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.2139 6.8139 1.6381 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.6437 6.3907 -0.3760 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.4216 8.5853 -0.6335 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.6793 10.3833 -2.2508 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.3166 7.4753 -5.2133 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 1 0 0 0 0
2 4 1 0 0 0 0
4 5 2 0 0 0 0
4 6 1 0 0 0 0
6 7 1 0 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
9 10 2 0 0 0 0
10 11 1 0 0 0 0
11 12 2 0 0 0 0
12 13 1 0 0 0 0
13 14 1 0 0 0 0
13 15 2 0 0 0 0
7 16 1 0 0 0 0
16 17 2 0 0 0 0
16 18 1 0 0 0 0
18 19 1 0 0 0 0
18 20 1 0 0 0 0
20 21 1 0 0 0 0
20 22 1 0 0 0 0
22 23 1 0 0 0 0
23 24 1 0 0 0 0
24 25 2 0 0 0 0
24 26 1 0 0 0 0
26 27 1 0 0 0 0
26 28 1 0 0 0 0
28 29 1 0 0 0 0
29 30 2 0 0 0 0
29 31 1 0 0 0 0
31 32 1 0 0 0 0
32 33 1 0 0 0 0
33 34 1 0 0 0 0
34 35 2 0 0 0 0
35 36 1 0 0 0 0
36 37 2 0 0 0 0
37 38 1 0 0 0 0
38 39 1 0 0 0 0
38 40 2 0 0 0 0
32 41 1 0 0 0 0
41 42 2 0 0 0 0
41 43 1 0 0 0 0
22 44 1 0 0 0 0
44 45 2 0 0 0 0
44 46 1 0 0 0 0
46 47 1 0 0 0 0
47 48 2 0 0 0 0
48 49 1 0 0 0 0
49 50 1 0 0 0 0
50 51 1 0 0 0 0
50 52 1 0 0 0 0
52 53 1 0 0 0 0
53 54 1 0 0 0 0
54 55 2 0 0 0 0
55 56 1 0 0 0 0
56 57 2 0 0 0 0
56 58 1 0 0 0 0
58 59 1 0 0 0 0
59 60 2 0 0 0 0
52 61 1 0 0 0 0
15 9 1 0 0 0 0
40 34 1 0 0 0 0
61 48 1 0 0 0 0
59 53 1 0 0 0 0
1 62 1 0 0 0 0
1 63 1 0 0 0 0
1 64 1 0 0 0 0
2 65 1 6 0 0 0
3 66 1 0 0 0 0
3 67 1 0 0 0 0
6 68 1 0 0 0 0
7 69 1 1 0 0 0
8 70 1 0 0 0 0
8 71 1 0 0 0 0
10 72 1 0 0 0 0
11 73 1 0 0 0 0
12 74 1 0 0 0 0
14 75 1 0 0 0 0
15 76 1 0 0 0 0
19 77 1 0 0 0 0
19 78 1 0 0 0 0
19 79 1 0 0 0 0
20 80 1 6 0 0 0
21 81 1 0 0 0 0
21 82 1 0 0 0 0
21 83 1 0 0 0 0
22 84 1 6 0 0 0
23 85 1 0 0 0 0
26 86 1 6 0 0 0
27 87 1 0 0 0 0
27 88 1 0 0 0 0
27 89 1 0 0 0 0
28 90 1 0 0 0 0
31 91 1 0 0 0 0
32 92 1 6 0 0 0
33 93 1 0 0 0 0
33 94 1 0 0 0 0
35 95 1 0 0 0 0
36 96 1 0 0 0 0
37 97 1 0 0 0 0
39 98 1 0 0 0 0
40 99 1 0 0 0 0
43100 1 0 0 0 0
46101 1 0 0 0 0
47102 1 0 0 0 0
49103 1 0 0 0 0
49104 1 0 0 0 0
50105 1 6 0 0 0
51106 1 0 0 0 0
52107 1 1 0 0 0
54108 1 0 0 0 0
55109 1 0 0 0 0
58110 1 0 0 0 0
M END
> <DATABASE_ID>
NP0012999
> <DATABASE_NAME>
NP-MRD
> <SMILES>
[H]OC(=O)[C@@]([H])(N([H])C(=O)N([H])[C@]([H])(C(=O)N([H])[C@]([H])(C(=O)N([H])C(\[H])=C1/O[C@@]([H])(N2C([H])=C([H])C(=O)N([H])C2=O)[C@]([H])(O[H])C1([H])[H])[C@@]([H])(N(C(=O)[C@@]([H])(N([H])C(=O)[C@@]([H])(N([H])[H])C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C(O[H])=C1[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C(O[H])=C1[H]
> <INCHI_IDENTIFIER>
InChI=1S/C39H49N9O13/c1-19(40)32(53)43-27(15-22-7-5-9-24(49)13-22)35(56)47(4)21(3)31(34(55)41-18-26-17-29(51)36(61-26)48-12-11-30(52)45-39(48)60)46-33(54)20(2)42-38(59)44-28(37(57)58)16-23-8-6-10-25(50)14-23/h5-14,18-21,27-29,31,36,49-51H,15-17,40H2,1-4H3,(H,41,55)(H,43,53)(H,46,54)(H,57,58)(H2,42,44,59)(H,45,52,60)/b26-18-/t19-,20-,21-,27-,28-,29+,31-,36+/m0/s1
> <INCHI_KEY>
NMVHSWKLTKXTCN-UEXGXZKGSA-N
> <FORMULA>
C39H49N9O13
> <MOLECULAR_WEIGHT>
851.871
> <EXACT_MASS>
851.344982674
> <JCHEM_ACCEPTOR_COUNT>
14
> <JCHEM_ATOM_COUNT>
110
> <JCHEM_AVERAGE_POLARIZABILITY>
86.4549495051216
> <JCHEM_BIOAVAILABILITY>
0
> <JCHEM_DONOR_COUNT>
11
> <JCHEM_FORMAL_CHARGE>
0
> <JCHEM_GHOSE_FILTER>
0
> <JCHEM_IUPAC>
(2S)-2-({[(1S)-1-{[(1S,2S)-2-[(2S)-2-[(2S)-2-aminopropanamido]-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2Z,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)propyl]carbamoyl}ethyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid
> <ALOGPS_LOGP>
0.62
> <JCHEM_LOGP>
-4.5661204737278664
> <ALOGPS_LOGS>
-4.17
> <JCHEM_MDDR_LIKE_RULE>
1
> <JCHEM_NUMBER_OF_RINGS>
4
> <JCHEM_PHYSIOLOGICAL_CHARGE>
0
> <JCHEM_PKA>
9.079118223658732
> <JCHEM_PKA_STRONGEST_ACIDIC>
3.2812262619809
> <JCHEM_PKA_STRONGEST_BASIC>
8.042634391137348
> <JCHEM_POLAR_SURFACE_AREA>
331.39
> <JCHEM_REFRACTIVITY>
212.40570000000008
> <JCHEM_ROTATABLE_BOND_COUNT>
17
> <JCHEM_RULE_OF_FIVE>
0
> <ALOGPS_SOLUBILITY>
5.76e-02 g/l
> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-({[(1S)-1-{[(1S,2S)-2-[(2S)-2-[(2S)-2-aminopropanamido]-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2Z,4R,5R)-5-(2,4-dioxo-3H-pyrimidin-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)propyl]carbamoyl}ethyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid
> <JCHEM_VEBER_RULE>
0
$$$$
3D-SDF for NP0012999 (Pacidamycin 3)
RDKit 3D
110113 0 0 0 0 0 0 0 0999 V2000
-7.7853 -2.2201 -0.9393 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.6225 -1.6702 -1.7556 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.4315 -2.5071 -2.9183 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.4275 -1.6256 -0.8856 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4450 -0.9863 0.1919 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.2654 -2.3038 -1.2664 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.0175 -2.3366 -0.4809 C 0 0 1 0 0 0 0 0 0 0 0 0
-2.6017 -3.7106 -0.1586 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.7319 -4.3283 0.6468 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7473 -5.0429 0.0729 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7588 -5.5776 0.8314 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7834 -5.4106 2.1976 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7578 -4.6883 2.7803 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7651 -4.5110 4.1460 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.7363 -4.1483 2.0118 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.0473 -1.3901 -1.0253 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5628 -0.3061 -1.5463 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6586 -1.4370 -1.0877 N 0 0 0 0 0 0 0 0 0 0 0 0
0.1170 -2.6088 -0.7011 C 0 0 0 0 0 0 0 0 0 0 0 0
0.1382 -0.2659 -1.4714 C 0 0 1 0 0 0 0 0 0 0 0 0
-0.2198 0.3553 -2.7550 C 0 0 0 0 0 0 0 0 0 0 0 0
0.2554 0.7513 -0.3377 C 0 0 2 0 0 0 0 0 0 0 0 0
0.9494 0.0976 0.7908 N 0 0 0 0 0 0 0 0 0 0 0 0
2.2900 0.3774 1.1212 C 0 0 0 0 0 0 0 0 0 0 0 0
2.9573 1.2135 0.4474 O 0 0 0 0 0 0 0 0 0 0 0 0
2.9367 -0.3188 2.2763 C 0 0 2 0 0 0 0 0 0 0 0 0
2.2039 -0.0291 3.5581 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3238 0.0950 2.3706 N 0 0 0 0 0 0 0 0 0 0 0 0
5.3377 -0.8235 2.0444 C 0 0 0 0 0 0 0 0 0 0 0 0
5.0465 -1.9880 1.6862 O 0 0 0 0 0 0 0 0 0 0 0 0
6.6962 -0.4436 2.1143 N 0 0 0 0 0 0 0 0 0 0 0 0
7.7363 -1.4299 1.7567 C 0 0 1 0 0 0 0 0 0 0 0 0
8.3349 -0.9877 0.4241 C 0 0 0 0 0 0 0 0 0 0 0 0
9.3740 -1.9375 0.0182 C 0 0 0 0 0 0 0 0 0 0 0 0
9.0221 -3.0886 -0.6717 C 0 0 0 0 0 0 0 0 0 0 0 0
10.0073 -3.9581 -1.0705 C 0 0 0 0 0 0 0 0 0 0 0 0
11.3435 -3.7205 -0.8055 C 0 0 0 0 0 0 0 0 0 0 0 0
11.6940 -2.5859 -0.1260 C 0 0 0 0 0 0 0 0 0 0 0 0
13.0279 -2.3169 0.1563 O 0 0 0 0 0 0 0 0 0 0 0 0
10.6982 -1.7083 0.2775 C 0 0 0 0 0 0 0 0 0 0 0 0
8.7314 -1.4391 2.8234 C 0 0 0 0 0 0 0 0 0 0 0 0
8.6505 -0.6762 3.8100 O 0 0 0 0 0 0 0 0 0 0 0 0
9.8084 -2.3115 2.7724 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.0149 1.2984 0.1298 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.6049 0.7342 1.1340 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.6630 2.4081 -0.4231 N 0 0 0 0 0 0 0 0 0 0 0 0
-2.9050 2.8486 0.1147 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.5687 3.8831 -0.3454 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.8748 4.4287 0.1403 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.7251 5.8982 -0.0590 C 0 0 1 0 0 0 0 0 0 0 0 0
-4.3999 6.4745 1.1840 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.5536 6.0707 -0.9688 C 0 0 2 0 0 0 0 0 0 0 0 0
-3.7273 7.0026 -2.0297 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.6257 8.3193 -1.6792 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.7669 9.3467 -2.5698 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0278 9.0014 -3.9012 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.1552 9.9524 -4.7131 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.1208 7.7129 -4.2120 N 0 0 0 0 0 0 0 0 0 0 0 0
-3.9769 6.7149 -3.3118 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.0675 5.4951 -3.6207 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.2341 4.7399 -1.3956 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.7095 -2.3308 -1.5077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0048 -1.5489 -0.0780 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4374 -3.1956 -0.5016 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8697 -0.6299 -2.1050 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.8001 -2.0362 -3.6054 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1130 -3.4498 -2.6447 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.2307 -2.8400 -2.1590 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3728 -1.8827 0.5186 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.7599 -3.7119 0.5465 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.4789 -4.3771 -1.0356 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7465 -5.1922 -1.0139 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5587 -6.1342 0.3749 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5919 -5.8363 2.8125 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.0424 -3.9883 4.6327 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.9510 -3.5800 2.5448 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.2419 -3.5427 -1.2080 H 0 0 0 0 0 0 0 0 0 0 0 0
0.2791 -2.7205 0.3669 H 0 0 0 0 0 0 0 0 0 0 0 0
1.1720 -2.4994 -1.1418 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2239 -0.6516 -1.5496 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.9786 1.1468 -2.7393 H 0 0 0 0 0 0 0 0 0 0 0 0
0.7274 0.7274 -3.2366 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.5279 -0.4844 -3.4515 H 0 0 0 0 0 0 0 0 0 0 0 0
0.9157 1.5398 -0.7005 H 0 0 0 0 0 0 0 0 0 0 0 0
0.4095 -0.5791 1.3417 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8460 -1.4018 2.0417 H 0 0 0 0 0 0 0 0 0 0 0 0
1.2842 -0.6772 3.5925 H 0 0 0 0 0 0 0 0 0 0 0 0
1.8200 1.0304 3.5436 H 0 0 0 0 0 0 0 0 0 0 0 0
2.8324 -0.1679 4.4482 H 0 0 0 0 0 0 0 0 0 0 0 0
4.5576 1.0480 2.6707 H 0 0 0 0 0 0 0 0 0 0 0 0
7.0576 0.4746 2.3963 H 0 0 0 0 0 0 0 0 0 0 0 0
7.2121 -2.3969 1.5848 H 0 0 0 0 0 0 0 0 0 0 0 0
8.7155 0.0508 0.5430 H 0 0 0 0 0 0 0 0 0 0 0 0
7.4893 -0.9682 -0.3113 H 0 0 0 0 0 0 0 0 0 0 0 0
7.9900 -3.2653 -0.8741 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7286 -4.8559 -1.6113 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0806 -4.4504 -1.1492 H 0 0 0 0 0 0 0 0 0 0 0 0
13.3141 -1.4794 0.6586 H 0 0 0 0 0 0 0 0 0 0 0 0
10.9889 -0.8206 0.8060 H 0 0 0 0 0 0 0 0 0 0 0 0
10.6718 -2.1568 3.2498 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.2388 2.9186 -1.2182 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.3240 2.2863 0.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0528 4.2268 1.2112 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6898 3.9859 -0.4780 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.6231 6.3870 -0.4920 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.2139 6.8139 1.6381 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.6437 6.3907 -0.3760 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.4216 8.5853 -0.6335 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.6793 10.3833 -2.2508 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.3166 7.4753 -5.2133 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0
2 3 1 0
2 4 1 0
4 5 2 0
4 6 1 0
6 7 1 0
7 8 1 0
8 9 1 0
9 10 2 0
10 11 1 0
11 12 2 0
12 13 1 0
13 14 1 0
13 15 2 0
7 16 1 0
16 17 2 0
16 18 1 0
18 19 1 0
18 20 1 0
20 21 1 0
20 22 1 0
22 23 1 0
23 24 1 0
24 25 2 0
24 26 1 0
26 27 1 0
26 28 1 0
28 29 1 0
29 30 2 0
29 31 1 0
31 32 1 0
32 33 1 0
33 34 1 0
34 35 2 0
35 36 1 0
36 37 2 0
37 38 1 0
38 39 1 0
38 40 2 0
32 41 1 0
41 42 2 0
41 43 1 0
22 44 1 0
44 45 2 0
44 46 1 0
46 47 1 0
47 48 2 0
48 49 1 0
49 50 1 0
50 51 1 0
50 52 1 0
52 53 1 0
53 54 1 0
54 55 2 0
55 56 1 0
56 57 2 0
56 58 1 0
58 59 1 0
59 60 2 0
52 61 1 0
15 9 1 0
40 34 1 0
61 48 1 0
59 53 1 0
1 62 1 0
1 63 1 0
1 64 1 0
2 65 1 6
3 66 1 0
3 67 1 0
6 68 1 0
7 69 1 1
8 70 1 0
8 71 1 0
10 72 1 0
11 73 1 0
12 74 1 0
14 75 1 0
15 76 1 0
19 77 1 0
19 78 1 0
19 79 1 0
20 80 1 6
21 81 1 0
21 82 1 0
21 83 1 0
22 84 1 6
23 85 1 0
26 86 1 6
27 87 1 0
27 88 1 0
27 89 1 0
28 90 1 0
31 91 1 0
32 92 1 6
33 93 1 0
33 94 1 0
35 95 1 0
36 96 1 0
37 97 1 0
39 98 1 0
40 99 1 0
43100 1 0
46101 1 0
47102 1 0
49103 1 0
49104 1 0
50105 1 6
51106 1 0
52107 1 1
54108 1 0
55109 1 0
58110 1 0
M END
PDB for NP0012999 (Pacidamycin 3)HEADER PROTEIN 04-JUL-21 NONE TITLE NULL COMPND NULL SOURCE NULL KEYWDS NULL EXPDTA NULL AUTHOR Marvin REVDAT 1 04-JUL-21 0 HETATM 1 C UNK 0 -7.785 -2.220 -0.939 0.00 0.00 C+0 HETATM 2 C UNK 0 -6.622 -1.670 -1.756 0.00 0.00 C+0 HETATM 3 N UNK 0 -6.431 -2.507 -2.918 0.00 0.00 N+0 HETATM 4 C UNK 0 -5.428 -1.626 -0.886 0.00 0.00 C+0 HETATM 5 O UNK 0 -5.445 -0.986 0.192 0.00 0.00 O+0 HETATM 6 N UNK 0 -4.265 -2.304 -1.266 0.00 0.00 N+0 HETATM 7 C UNK 0 -3.018 -2.337 -0.481 0.00 0.00 C+0 HETATM 8 C UNK 0 -2.602 -3.711 -0.159 0.00 0.00 C+0 HETATM 9 C UNK 0 -3.732 -4.328 0.647 0.00 0.00 C+0 HETATM 10 C UNK 0 -4.747 -5.043 0.073 0.00 0.00 C+0 HETATM 11 C UNK 0 -5.759 -5.578 0.831 0.00 0.00 C+0 HETATM 12 C UNK 0 -5.783 -5.411 2.198 0.00 0.00 C+0 HETATM 13 C UNK 0 -4.758 -4.688 2.780 0.00 0.00 C+0 HETATM 14 O UNK 0 -4.765 -4.511 4.146 0.00 0.00 O+0 HETATM 15 C UNK 0 -3.736 -4.148 2.012 0.00 0.00 C+0 HETATM 16 C UNK 0 -2.047 -1.390 -1.025 0.00 0.00 C+0 HETATM 17 O UNK 0 -2.563 -0.306 -1.546 0.00 0.00 O+0 HETATM 18 N UNK 0 -0.659 -1.437 -1.088 0.00 0.00 N+0 HETATM 19 C UNK 0 0.117 -2.609 -0.701 0.00 0.00 C+0 HETATM 20 C UNK 0 0.138 -0.266 -1.471 0.00 0.00 C+0 HETATM 21 C UNK 0 -0.220 0.355 -2.755 0.00 0.00 C+0 HETATM 22 C UNK 0 0.255 0.751 -0.338 0.00 0.00 C+0 HETATM 23 N UNK 0 0.949 0.098 0.791 0.00 0.00 N+0 HETATM 24 C UNK 0 2.290 0.377 1.121 0.00 0.00 C+0 HETATM 25 O UNK 0 2.957 1.214 0.447 0.00 0.00 O+0 HETATM 26 C UNK 0 2.937 -0.319 2.276 0.00 0.00 C+0 HETATM 27 C UNK 0 2.204 -0.029 3.558 0.00 0.00 C+0 HETATM 28 N UNK 0 4.324 0.095 2.371 0.00 0.00 N+0 HETATM 29 C UNK 0 5.338 -0.824 2.044 0.00 0.00 C+0 HETATM 30 O UNK 0 5.046 -1.988 1.686 0.00 0.00 O+0 HETATM 31 N UNK 0 6.696 -0.444 2.114 0.00 0.00 N+0 HETATM 32 C UNK 0 7.736 -1.430 1.757 0.00 0.00 C+0 HETATM 33 C UNK 0 8.335 -0.988 0.424 0.00 0.00 C+0 HETATM 34 C UNK 0 9.374 -1.938 0.018 0.00 0.00 C+0 HETATM 35 C UNK 0 9.022 -3.089 -0.672 0.00 0.00 C+0 HETATM 36 C UNK 0 10.007 -3.958 -1.071 0.00 0.00 C+0 HETATM 37 C UNK 0 11.344 -3.720 -0.806 0.00 0.00 C+0 HETATM 38 C UNK 0 11.694 -2.586 -0.126 0.00 0.00 C+0 HETATM 39 O UNK 0 13.028 -2.317 0.156 0.00 0.00 O+0 HETATM 40 C UNK 0 10.698 -1.708 0.278 0.00 0.00 C+0 HETATM 41 C UNK 0 8.731 -1.439 2.823 0.00 0.00 C+0 HETATM 42 O UNK 0 8.650 -0.676 3.810 0.00 0.00 O+0 HETATM 43 O UNK 0 9.808 -2.312 2.772 0.00 0.00 O+0 HETATM 44 C UNK 0 -1.015 1.298 0.130 0.00 0.00 C+0 HETATM 45 O UNK 0 -1.605 0.734 1.134 0.00 0.00 O+0 HETATM 46 N UNK 0 -1.663 2.408 -0.423 0.00 0.00 N+0 HETATM 47 C UNK 0 -2.905 2.849 0.115 0.00 0.00 C+0 HETATM 48 C UNK 0 -3.569 3.883 -0.345 0.00 0.00 C+0 HETATM 49 C UNK 0 -4.875 4.429 0.140 0.00 0.00 C+0 HETATM 50 C UNK 0 -4.725 5.898 -0.059 0.00 0.00 C+0 HETATM 51 O UNK 0 -4.400 6.474 1.184 0.00 0.00 O+0 HETATM 52 C UNK 0 -3.554 6.071 -0.969 0.00 0.00 C+0 HETATM 53 N UNK 0 -3.727 7.003 -2.030 0.00 0.00 N+0 HETATM 54 C UNK 0 -3.626 8.319 -1.679 0.00 0.00 C+0 HETATM 55 C UNK 0 -3.767 9.347 -2.570 0.00 0.00 C+0 HETATM 56 C UNK 0 -4.028 9.001 -3.901 0.00 0.00 C+0 HETATM 57 O UNK 0 -4.155 9.952 -4.713 0.00 0.00 O+0 HETATM 58 N UNK 0 -4.121 7.713 -4.212 0.00 0.00 N+0 HETATM 59 C UNK 0 -3.977 6.715 -3.312 0.00 0.00 C+0 HETATM 60 O UNK 0 -4.067 5.495 -3.621 0.00 0.00 O+0 HETATM 61 O UNK 0 -3.234 4.740 -1.396 0.00 0.00 O+0 HETATM 62 H UNK 0 -8.710 -2.331 -1.508 0.00 0.00 H+0 HETATM 63 H UNK 0 -8.005 -1.549 -0.078 0.00 0.00 H+0 HETATM 64 H UNK 0 -7.437 -3.196 -0.502 0.00 0.00 H+0 HETATM 65 H UNK 0 -6.870 -0.630 -2.105 0.00 0.00 H+0 HETATM 66 H UNK 0 -5.800 -2.036 -3.605 0.00 0.00 H+0 HETATM 67 H UNK 0 -6.113 -3.450 -2.645 0.00 0.00 H+0 HETATM 68 H UNK 0 -4.231 -2.840 -2.159 0.00 0.00 H+0 HETATM 69 H UNK 0 -3.373 -1.883 0.519 0.00 0.00 H+0 HETATM 70 H UNK 0 -1.760 -3.712 0.547 0.00 0.00 H+0 HETATM 71 H UNK 0 -2.479 -4.377 -1.036 0.00 0.00 H+0 HETATM 72 H UNK 0 -4.747 -5.192 -1.014 0.00 0.00 H+0 HETATM 73 H UNK 0 -6.559 -6.134 0.375 0.00 0.00 H+0 HETATM 74 H UNK 0 -6.592 -5.836 2.813 0.00 0.00 H+0 HETATM 75 H UNK 0 -4.042 -3.988 4.633 0.00 0.00 H+0 HETATM 76 H UNK 0 -2.951 -3.580 2.545 0.00 0.00 H+0 HETATM 77 H UNK 0 -0.242 -3.543 -1.208 0.00 0.00 H+0 HETATM 78 H UNK 0 0.279 -2.720 0.367 0.00 0.00 H+0 HETATM 79 H UNK 0 1.172 -2.499 -1.142 0.00 0.00 H+0 HETATM 80 H UNK 0 1.224 -0.652 -1.550 0.00 0.00 H+0 HETATM 81 H UNK 0 -0.979 1.147 -2.739 0.00 0.00 H+0 HETATM 82 H UNK 0 0.727 0.727 -3.237 0.00 0.00 H+0 HETATM 83 H UNK 0 -0.528 -0.484 -3.451 0.00 0.00 H+0 HETATM 84 H UNK 0 0.916 1.540 -0.701 0.00 0.00 H+0 HETATM 85 H UNK 0 0.410 -0.579 1.342 0.00 0.00 H+0 HETATM 86 H UNK 0 2.846 -1.402 2.042 0.00 0.00 H+0 HETATM 87 H UNK 0 1.284 -0.677 3.592 0.00 0.00 H+0 HETATM 88 H UNK 0 1.820 1.030 3.544 0.00 0.00 H+0 HETATM 89 H UNK 0 2.832 -0.168 4.448 0.00 0.00 H+0 HETATM 90 H UNK 0 4.558 1.048 2.671 0.00 0.00 H+0 HETATM 91 H UNK 0 7.058 0.475 2.396 0.00 0.00 H+0 HETATM 92 H UNK 0 7.212 -2.397 1.585 0.00 0.00 H+0 HETATM 93 H UNK 0 8.716 0.051 0.543 0.00 0.00 H+0 HETATM 94 H UNK 0 7.489 -0.968 -0.311 0.00 0.00 H+0 HETATM 95 H UNK 0 7.990 -3.265 -0.874 0.00 0.00 H+0 HETATM 96 H UNK 0 9.729 -4.856 -1.611 0.00 0.00 H+0 HETATM 97 H UNK 0 12.081 -4.450 -1.149 0.00 0.00 H+0 HETATM 98 H UNK 0 13.314 -1.479 0.659 0.00 0.00 H+0 HETATM 99 H UNK 0 10.989 -0.821 0.806 0.00 0.00 H+0 HETATM 100 H UNK 0 10.672 -2.157 3.250 0.00 0.00 H+0 HETATM 101 H UNK 0 -1.239 2.919 -1.218 0.00 0.00 H+0 HETATM 102 H UNK 0 -3.324 2.286 0.963 0.00 0.00 H+0 HETATM 103 H UNK 0 -5.053 4.227 1.211 0.00 0.00 H+0 HETATM 104 H UNK 0 -5.690 3.986 -0.478 0.00 0.00 H+0 HETATM 105 H UNK 0 -5.623 6.387 -0.492 0.00 0.00 H+0 HETATM 106 H UNK 0 -5.214 6.814 1.638 0.00 0.00 H+0 HETATM 107 H UNK 0 -2.644 6.391 -0.376 0.00 0.00 H+0 HETATM 108 H UNK 0 -3.422 8.585 -0.634 0.00 0.00 H+0 HETATM 109 H UNK 0 -3.679 10.383 -2.251 0.00 0.00 H+0 HETATM 110 H UNK 0 -4.317 7.475 -5.213 0.00 0.00 H+0 CONECT 1 2 62 63 64 CONECT 2 1 3 4 65 CONECT 3 2 66 67 CONECT 4 2 5 6 CONECT 5 4 CONECT 6 4 7 68 CONECT 7 6 8 16 69 CONECT 8 7 9 70 71 CONECT 9 8 10 15 CONECT 10 9 11 72 CONECT 11 10 12 73 CONECT 12 11 13 74 CONECT 13 12 14 15 CONECT 14 13 75 CONECT 15 13 9 76 CONECT 16 7 17 18 CONECT 17 16 CONECT 18 16 19 20 CONECT 19 18 77 78 79 CONECT 20 18 21 22 80 CONECT 21 20 81 82 83 CONECT 22 20 23 44 84 CONECT 23 22 24 85 CONECT 24 23 25 26 CONECT 25 24 CONECT 26 24 27 28 86 CONECT 27 26 87 88 89 CONECT 28 26 29 90 CONECT 29 28 30 31 CONECT 30 29 CONECT 31 29 32 91 CONECT 32 31 33 41 92 CONECT 33 32 34 93 94 CONECT 34 33 35 40 CONECT 35 34 36 95 CONECT 36 35 37 96 CONECT 37 36 38 97 CONECT 38 37 39 40 CONECT 39 38 98 CONECT 40 38 34 99 CONECT 41 32 42 43 CONECT 42 41 CONECT 43 41 100 CONECT 44 22 45 46 CONECT 45 44 CONECT 46 44 47 101 CONECT 47 46 48 102 CONECT 48 47 49 61 CONECT 49 48 50 103 104 CONECT 50 49 51 52 105 CONECT 51 50 106 CONECT 52 50 53 61 107 CONECT 53 52 54 59 CONECT 54 53 55 108 CONECT 55 54 56 109 CONECT 56 55 57 58 CONECT 57 56 CONECT 58 56 59 110 CONECT 59 58 60 53 CONECT 60 59 CONECT 61 52 48 CONECT 62 1 CONECT 63 1 CONECT 64 1 CONECT 65 2 CONECT 66 3 CONECT 67 3 CONECT 68 6 CONECT 69 7 CONECT 70 8 CONECT 71 8 CONECT 72 10 CONECT 73 11 CONECT 74 12 CONECT 75 14 CONECT 76 15 CONECT 77 19 CONECT 78 19 CONECT 79 19 CONECT 80 20 CONECT 81 21 CONECT 82 21 CONECT 83 21 CONECT 84 22 CONECT 85 23 CONECT 86 26 CONECT 87 27 CONECT 88 27 CONECT 89 27 CONECT 90 28 CONECT 91 31 CONECT 92 32 CONECT 93 33 CONECT 94 33 CONECT 95 35 CONECT 96 36 CONECT 97 37 CONECT 98 39 CONECT 99 40 CONECT 100 43 CONECT 101 46 CONECT 102 47 CONECT 103 49 CONECT 104 49 CONECT 105 50 CONECT 106 51 CONECT 107 52 CONECT 108 54 CONECT 109 55 CONECT 110 58 MASTER 0 0 0 0 0 0 0 0 110 0 226 0 END SMILES for NP0012999 (Pacidamycin 3)[H]OC(=O)[C@@]([H])(N([H])C(=O)N([H])[C@]([H])(C(=O)N([H])[C@]([H])(C(=O)N([H])C(\[H])=C1/O[C@@]([H])(N2C([H])=C([H])C(=O)N([H])C2=O)[C@]([H])(O[H])C1([H])[H])[C@@]([H])(N(C(=O)[C@@]([H])(N([H])C(=O)[C@@]([H])(N([H])[H])C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C(O[H])=C1[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C(O[H])=C1[H] INCHI for NP0012999 (Pacidamycin 3)InChI=1S/C39H49N9O13/c1-19(40)32(53)43-27(15-22-7-5-9-24(49)13-22)35(56)47(4)21(3)31(34(55)41-18-26-17-29(51)36(61-26)48-12-11-30(52)45-39(48)60)46-33(54)20(2)42-38(59)44-28(37(57)58)16-23-8-6-10-25(50)14-23/h5-14,18-21,27-29,31,36,49-51H,15-17,40H2,1-4H3,(H,41,55)(H,43,53)(H,46,54)(H,57,58)(H2,42,44,59)(H,45,52,60)/b26-18-/t19-,20-,21-,27-,28-,29+,31-,36+/m0/s1 3D Structure for NP0012999 (Pacidamycin 3) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Synonyms |
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| Chemical Formula | C39H49N9O13 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Average Mass | 851.8710 Da | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Monoisotopic Mass | 851.34498 Da | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IUPAC Name | (2S)-2-({[(1S)-1-{[(1S,2S)-2-[(2S)-2-[(2S)-2-aminopropanamido]-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2Z,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)propyl]carbamoyl}ethyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Traditional Name | (2S)-2-({[(1S)-1-{[(1S,2S)-2-[(2S)-2-[(2S)-2-aminopropanamido]-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2Z,4R,5R)-5-(2,4-dioxo-3H-pyrimidin-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)propyl]carbamoyl}ethyl]carbamoyl}amino)-3-(3-hydroxyphenyl)propanoic acid | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| CAS Registry Number | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SMILES | C[C@H](N)C(=O)N[C@@H](CC1=CC(O)=CC=C1)C(=O)N(C)[C@@H](C)[C@H](NC(=O)[C@H](C)NC(=O)N[C@@H](CC1=CC(O)=CC=C1)C(O)=O)C(=O)N\C=C1\C[C@@H](O)[C@@H](O1)N1C=CC(=O)NC1=O | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Identifier | InChI=1S/C39H49N9O13/c1-19(40)32(53)43-27(15-22-7-5-9-24(49)13-22)35(56)47(4)21(3)31(34(55)41-18-26-17-29(51)36(61-26)48-12-11-30(52)45-39(48)60)46-33(54)20(2)42-38(59)44-28(37(57)58)16-23-8-6-10-25(50)14-23/h5-14,18-21,27-29,31,36,49-51H,15-17,40H2,1-4H3,(H,41,55)(H,43,53)(H,46,54)(H,57,58)(H2,42,44,59)(H,45,52,60)/b26-18-/t19-,20-,21-,27-,28-,29+,31-,36+/m0/s1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Key | NMVHSWKLTKXTCN-UEXGXZKGSA-N | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Spectra | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Predicted Spectra | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Chemical Shift Submissions | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Species | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Species of Origin |
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| Chemical Taxonomy | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Classification | Not classified | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Physical Properties | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| State | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Properties |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Predicted Properties |
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| External Links | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NPAtlas ID | NPA024848 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HMDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| DrugBank ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phenol Explorer Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| FoodDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KNApSAcK ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemspider ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KEGG Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BioCyc ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BiGG ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Wikipedia Link | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| METLIN ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PubChem Compound | 145720655 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ChEBI ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Good Scents ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| References | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| General References | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
