Np mrd loader

Record Information
Version2.0
Created at2021-01-05 22:24:43 UTC
Updated at2021-07-15 17:12:56 UTC
NP-MRD IDNP0012861
Secondary Accession NumbersNone
Natural Product Identification
Common NameGageopeptide D
Provided ByNPAtlasNPAtlas Logo
Description Gageopeptide D is found in Bacillus. Gageopeptide D was first documented in 2020 (PMID: 32425899). Based on a literature review very few articles have been published on Gageopeptide D.
Structure
Thumb
Synonyms
ValueSource
(2S)-2-{[(2S)-2-{[(2S)-4-carboxy-2-{[(2S)-2-{[(3R)-1,3-dihydroxy-9,11-dimethyltridecylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxybutylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-4-methylpentanoateGenerator
Chemical FormulaC38H70N4O9
Average Mass726.9970 Da
Monoisotopic Mass726.51428 Da
IUPAC Name(2S)-2-[(2S)-2-[(2S)-4-carboxy-2-[(2S)-2-[(3R,9S,11S)-3-hydroxy-9,11-dimethyltridecanamido]-4-methylpentanamido]butanamido]-4-methylpentanamido]-4-methylpentanoic acid
Traditional Name(2S)-2-[(2S)-2-[(2S)-4-carboxy-2-[(2S)-2-[(3R,9S,11S)-3-hydroxy-9,11-dimethyltridecanamido]-4-methylpentanamido]butanamido]-4-methylpentanamido]-4-methylpentanoic acid
CAS Registry NumberNot Available
SMILES
CCC(C)CC(C)CCCCC[C@@H](O)CC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(O)=O
InChI Identifier
InChI=1S/C38H70N4O9/c1-10-26(8)21-27(9)14-12-11-13-15-28(43)22-33(44)39-30(18-23(2)3)36(48)40-29(16-17-34(45)46)35(47)41-31(19-24(4)5)37(49)42-32(38(50)51)20-25(6)7/h23-32,43H,10-22H2,1-9H3,(H,39,44)(H,40,48)(H,41,47)(H,42,49)(H,45,46)(H,50,51)/t26?,27?,28-,29+,30+,31+,32+/m1/s1
InChI KeyUZGWGZSRLAITPB-SMSJGLPFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
BacillusNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.44ALOGPS
logP5.53ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)3.67ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area211.23 ŲChemAxon
Rotatable Bond Count28ChemAxon
Refractivity194.89 m³·mol⁻¹ChemAxon
Polarizability83.43 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA018040
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID32674695
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588117
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Chakraborty M, Mahmud NU, Gupta DR, Tareq FS, Shin HJ, Islam T: Inhibitory Effects of Linear Lipopeptides From a Marine Bacillus subtilis on the Wheat Blast Fungus Magnaporthe oryzae Triticum. Front Microbiol. 2020 Apr 30;11:665. doi: 10.3389/fmicb.2020.00665. eCollection 2020. [PubMed:32425899 ]