NP-MRD: Showing NP-Card for Cytochalasin Z26 (NP0012816)

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Record Information

Version

2.0

Created at

2021-01-05 22:22:53 UTC

Updated at

2021-07-15 17:12:48 UTC

NP-MRD ID

NP0012816

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cytochalasin Z26

Provided By

NPAtlas

Description

Cytochalasin Z26 is found in Eutypella sp. D-1.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117113D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242117113D          

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  1 36  1  0  0  0  0
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  1 38  1  0  0  0  0
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M  END
> <DATABASE_ID>
NP0012816

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])[C@]1([H])N([H])C(=O)[C@@]23OC(=O)O\C([H])=C([H])/[C@]([H])(C(=O)[C@@]([H])(C([H])([H])[H])C([H])([H])\C([H])=C([H])/[C@@]2([H])C([H])=C(C([H])([H])[H])[C@@]([H])(C([H])([H])[H])[C@@]13[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C28H33NO6/c1-16-6-5-7-21-14-18(3)19(4)24-23(15-20-8-10-22(30)11-9-20)29-26(32)28(21,24)35-27(33)34-13-12-17(2)25(16)31/h5,7-14,16-17,19,21,23-24,30H,6,15H2,1-4H3,(H,29,32)/b7-5-,13-12-/t16-,17+,19+,21-,23-,24-,28+/m0/s1

> <INCHI_KEY>
QOOQHQWQVSYXFV-DNHHDHEISA-N

> <FORMULA>
C28H33NO6

> <MOLECULAR_WEIGHT>
479.573

> <EXACT_MASS>
479.230787787

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
50.944732220747014

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(6R,8S,14S,14aS,15S,17aR,17bS)-15-[(4-hydroxyphenyl)methyl]-6,8,13,14-tetramethyl-2H,6H,7H,8H,9H,14H,14aH,15H,16H,17H,17bH-1,3-dioxacyclotrideca[5,4-e]isoindole-2,7,17-trione

> <ALOGPS_LOGP>
4.02

> <JCHEM_LOGP>
5.005860858999999

> <ALOGPS_LOGS>
-5.23

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.094170547556537

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.50416905198369

> <JCHEM_PKA_STRONGEST_BASIC>
-5.525516611729037

> <JCHEM_POLAR_SURFACE_AREA>
101.93000000000002

> <JCHEM_REFRACTIVITY>
133.2461

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.80e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(6R,8S,14S,14aS,15S,17aR,17bS)-15-[(4-hydroxyphenyl)methyl]-6,8,13,14-tetramethyl-6H,8H,9H,14H,14aH,15H,16H,17bH-1,3-dioxacyclotrideca[5,4-e]isoindole-2,7,17-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

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 20  4  1  0
 32 26  1  0
 33 20  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  3 39  1  0
  4 40  1  6
  5 41  1  0
  6 42  1  0
  7 43  1  0
  7 44  1  0
  8 45  1  6
  9 46  1  0
  9 47  1  0
  9 48  1  0
 12 49  1  6
 13 50  1  0
 13 51  1  0
 13 52  1  0
 14 53  1  0
 15 54  1  0
 23 55  1  0
 24 56  1  6
 25 57  1  0
 25 58  1  0
 27 59  1  0
 28 60  1  0
 30 61  1  0
 31 62  1  0
 32 63  1  0
 33 64  1  1
 34 65  1  6
 35 66  1  0
 35 67  1  0
 35 68  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       2.783  -0.044  -3.247  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.677  -0.124  -2.273  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.513   0.470  -2.386  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.583   0.369  -1.388  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.228   1.703  -1.360  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.543   1.752  -1.395  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.428   0.617  -1.461  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.760   0.920  -0.760  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.101   2.379  -0.827  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.738   0.436   0.632  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.841   1.247   1.532  0.00  0.00           O+0
HETATM   12  C   UNK     0      -4.596  -0.984   0.966  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.966  -1.670   1.065  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.885  -1.076   2.272  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.813  -1.823   2.490  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.297  -2.564   1.497  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.554  -2.275   0.372  0.00  0.00           C+0
HETATM   18  O   UNK     0      -1.911  -3.060  -0.609  0.00  0.00           O+0
HETATM   19  O   UNK     0      -0.638  -1.347   0.340  0.00  0.00           O+0
HETATM   20  C   UNK     0      -0.165  -0.151  -0.048  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.480   0.980   0.901  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.479   0.996   1.639  0.00  0.00           O+0
HETATM   23  N   UNK     0       0.582   1.886   0.703  0.00  0.00           N+0
HETATM   24  C   UNK     0       1.809   1.120   0.430  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.745   1.337   1.608  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.026   0.650   1.538  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.163  -0.604   2.147  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.351  -1.293   2.111  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.417  -0.707   1.449  0.00  0.00           C+0
HETATM   30  O   UNK     0       7.653  -1.365   1.381  0.00  0.00           O+0
HETATM   31  C   UNK     0       6.280   0.523   0.852  0.00  0.00           C+0
HETATM   32  C   UNK     0       5.098   1.230   0.878  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.351  -0.223   0.164  0.00  0.00           C+0
HETATM   34  C   UNK     0       1.886  -0.946  -1.037  0.00  0.00           C+0
HETATM   35  C   UNK     0       3.239  -1.527  -0.928  0.00  0.00           C+0
HETATM   36  H   UNK     0       3.662   0.442  -2.767  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.492   0.496  -4.173  0.00  0.00           H+0
HETATM   38  H   UNK     0       3.090  -1.073  -3.516  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.337   1.074  -3.266  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.242  -0.414  -1.822  0.00  0.00           H+0
HETATM   41  H   UNK     0      -0.636   2.636  -1.315  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.986   2.758  -1.373  0.00  0.00           H+0
HETATM   43  H   UNK     0      -3.709   0.471  -2.547  0.00  0.00           H+0
HETATM   44  H   UNK     0      -3.115  -0.338  -1.092  0.00  0.00           H+0
HETATM   45  H   UNK     0      -5.537   0.357  -1.308  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.971   2.805  -1.829  0.00  0.00           H+0
HETATM   47  H   UNK     0      -6.172   2.512  -0.563  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.521   2.901  -0.038  0.00  0.00           H+0
HETATM   49  H   UNK     0      -4.032  -1.574   0.246  0.00  0.00           H+0
HETATM   50  H   UNK     0      -6.664  -1.229   0.325  0.00  0.00           H+0
HETATM   51  H   UNK     0      -6.302  -1.476   2.116  0.00  0.00           H+0
HETATM   52  H   UNK     0      -5.844  -2.751   0.971  0.00  0.00           H+0
HETATM   53  H   UNK     0      -4.312  -0.470   3.071  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.438  -1.750   3.534  0.00  0.00           H+0
HETATM   55  H   UNK     0       0.503   2.910   0.752  0.00  0.00           H+0
HETATM   56  H   UNK     0       2.343   1.538  -0.448  0.00  0.00           H+0
HETATM   57  H   UNK     0       2.213   1.196   2.575  0.00  0.00           H+0
HETATM   58  H   UNK     0       2.971   2.445   1.586  0.00  0.00           H+0
HETATM   59  H   UNK     0       3.335  -1.071   2.668  0.00  0.00           H+0
HETATM   60  H   UNK     0       5.487  -2.272   2.577  0.00  0.00           H+0
HETATM   61  H   UNK     0       7.818  -2.256   1.792  0.00  0.00           H+0
HETATM   62  H   UNK     0       7.135   0.940   0.350  0.00  0.00           H+0
HETATM   63  H   UNK     0       4.952   2.186   0.427  0.00  0.00           H+0
HETATM   64  H   UNK     0       1.537  -0.885   1.039  0.00  0.00           H+0
HETATM   65  H   UNK     0       1.178  -1.821  -1.184  0.00  0.00           H+0
HETATM   66  H   UNK     0       3.368  -2.224  -0.087  0.00  0.00           H+0
HETATM   67  H   UNK     0       4.019  -0.727  -0.986  0.00  0.00           H+0
HETATM   68  H   UNK     0       3.476  -2.164  -1.839  0.00  0.00           H+0
CONECT    1    2   36   37   38                                             
CONECT    2    1    3   34                                                  
CONECT    3    2    4   39                                                  
CONECT    4    3    5   20   40                                             
CONECT    5    4    6   41                                                  
CONECT    6    5    7   42                                                  
CONECT    7    6    8   43   44                                             
CONECT    8    7    9   10   45                                             
CONECT    9    8   46   47   48                                             
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14   49                                             
CONECT   13   12   50   51   52                                             
CONECT   14   12   15   53                                                  
CONECT   15   14   16   54                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21    4   33                                             
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   55                                                  
CONECT   24   23   25   33   56                                             
CONECT   25   24   26   57   58                                             
CONECT   26   25   27   32                                                  
CONECT   27   26   28   59                                                  
CONECT   28   27   29   60                                                  
CONECT   29   28   30   31                                                  
CONECT   30   29   61                                                       
CONECT   31   29   32   62                                                  
CONECT   32   31   26   63                                                  
CONECT   33   24   34   20   64                                             
CONECT   34   33   35    2   65                                             
CONECT   35   34   66   67   68                                             
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    3                                                            
CONECT   40    4                                                            
CONECT   41    5                                                            
CONECT   42    6                                                            
CONECT   43    7                                                            
CONECT   44    7                                                            
CONECT   45    8                                                            
CONECT   46    9                                                            
CONECT   47    9                                                            
CONECT   48    9                                                            
CONECT   49   12                                                            
CONECT   50   13                                                            
CONECT   51   13                                                            
CONECT   52   13                                                            
CONECT   53   14                                                            
CONECT   54   15                                                            
CONECT   55   23                                                            
CONECT   56   24                                                            
CONECT   57   25                                                            
CONECT   58   25                                                            
CONECT   59   27                                                            
CONECT   60   28                                                            
CONECT   61   30                                                            
CONECT   62   31                                                            
CONECT   63   32                                                            
CONECT   64   33                                                            
CONECT   65   34                                                            
CONECT   66   35                                                            
CONECT   67   35                                                            
CONECT   68   35                                                            
MASTER        0    0    0    0    0    0    0    0   68    0  142    0
END

RDKit          3D

68 71  0  0  0  0  0  0  0  0999 V2000
    2.7832   -0.0437   -3.2465 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.9665   -1.6697    1.0648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8847   -1.0759    2.2725 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.9516    2.1855    0.4272 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.0191   -0.7267   -0.9859 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4758   -2.1639   -1.8386 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
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 24 33  1  0
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 20  4  1  0
 32 26  1  0
 33 20  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  3 39  1  0
  4 40  1  6
  5 41  1  0
  6 42  1  0
  7 43  1  0
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  8 45  1  6
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 35 66  1  0
 35 67  1  0
 35 68  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₈H₃₃NO₆

Average Mass

479.5730 Da

Monoisotopic Mass

479.23079 Da

IUPAC Name

(6R,8S,14S,14aS,15S,17aR,17bS)-15-[(4-hydroxyphenyl)methyl]-6,8,13,14-tetramethyl-2H,6H,7H,8H,9H,14H,14aH,15H,16H,17H,17bH-1,3-dioxacyclotrideca[5,4-e]isoindole-2,7,17-trione

Traditional Name

(6R,8S,14S,14aS,15S,17aR,17bS)-15-[(4-hydroxyphenyl)methyl]-6,8,13,14-tetramethyl-6H,8H,9H,14H,14aH,15H,16H,17bH-1,3-dioxacyclotrideca[5,4-e]isoindole-2,7,17-trione

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](CC3=CC=C(O)C=C3)NC(=O)[C@@]22OC(=O)O\C=C/[C@@H](C)C(=O)[C@@H](C)C\C=C/[C@H]2C=C1C

InChI Identifier

InChI=1S/C28H33NO6/c1-16-6-5-7-21-14-18(3)19(4)24-23(15-20-8-10-22(30)11-9-20)29-26(32)28(21,24)35-27(33)34-13-12-17(2)25(16)31/h5,7-14,16-17,19,21,23-24,30H,6,15H2,1-4H3,(H,29,32)/b7-5-,13-12-/t16-,17+,19+,21-,23-,24-,28+/m0/s1

InChI Key

QOOQHQWQVSYXFV-DNHHDHEISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Eutypella sp. D-1	NPAtlas	24827690

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.02	ALOGPS
logP	5.01	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	9.5	ChemAxon
pKa (Strongest Basic)	-5.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	101.93 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	133.25 m³·mol⁻¹	ChemAxon
Polarizability	50.94 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Showing NP-Card for Cytochalasin Z26 (NP0012816)

MOL for NP0012816 (Cytochalasin Z26)

3D MOL for NP0012816 (Cytochalasin Z26)

3D SDF for NP0012816 (Cytochalasin Z26)

3D-SDF for NP0012816 (Cytochalasin Z26)

PDB for NP0012816 (Cytochalasin Z26)

3D PDB for NP0012816 (Cytochalasin Z26)

SMILES for NP0012816 (Cytochalasin Z26)

INCHI for NP0012816 (Cytochalasin Z26)

Structure for NP0012816 (Cytochalasin Z26)

3D Structure for NP0012816 (Cytochalasin Z26)