NP-MRD: Showing NP-Card for Amycofuran (NP0012768)

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Record Information

Version

2.0

Created at

2021-01-05 22:03:23 UTC

Updated at

2021-07-15 17:12:40 UTC

NP-MRD ID

NP0012768

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Amycofuran

Provided By

NPAtlas

Description

Amycofuran is found in Amycolatopsis sp. Amycofuran was first documented in 2014 (PMID: 24759001). Based on a literature review very few articles have been published on (2S,3R,4R,5R,6S)-2-{[(2R)-5-hydroxy-2-[(1E,3E)-penta-1,3-dien-1-yl]-2,3-dihydro-1-benzofuran-7-yl]oxy}-6-methyloxane-3,4,5-triol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117113D          

 50 52  0  0  0  0            999 V2000
    7.0391    0.6793    2.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9183    0.1508    1.5694 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1785    1.0309   -1.3670 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5021   -0.0933   -2.3372 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1385   -0.5601   -2.6911 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5934   -1.2145   -3.7715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7449   -1.5372   -3.8471 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242117113D          

 50 52  0  0  0  0            999 V2000
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    5.9183    0.1508    1.5694 C   0  0  0  0  0  0  0  0  0  0  0  0
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  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 13 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26  6  1  0  0  0  0
 25  8  1  0  0  0  0
 23 15  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  2 30  1  0  0  0  0
  3 31  1  0  0  0  0
  4 32  1  0  0  0  0
  5 33  1  0  0  0  0
  6 34  1  6  0  0  0
  7 35  1  0  0  0  0
  7 36  1  0  0  0  0
  9 37  1  0  0  0  0
 11 38  1  0  0  0  0
 12 39  1  0  0  0  0
 15 40  1  1  0  0  0
 17 41  1  6  0  0  0
 18 42  1  0  0  0  0
 18 43  1  0  0  0  0
 18 44  1  0  0  0  0
 19 45  1  1  0  0  0
 20 46  1  0  0  0  0
 21 47  1  6  0  0  0
 22 48  1  0  0  0  0
 23 49  1  6  0  0  0
 24 50  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0012768

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C(O[C@]2([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@@]2([H])O[H])=C2O[C@@]([H])(C(\[H])=C(/[H])\C(\[H])=C(/[H])C([H])([H])[H])C([H])([H])C2=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C19H24O7/c1-3-4-5-6-13-8-11-7-12(20)9-14(18(11)25-13)26-19-17(23)16(22)15(21)10(2)24-19/h3-7,9-10,13,15-17,19-23H,8H2,1-2H3/b4-3+,6-5+/t10-,13-,15-,16+,17+,19-/m0/s1

> <INCHI_KEY>
IXCFJQNYIPECMG-SCDWHHIESA-N

> <FORMULA>
C19H24O7

> <MOLECULAR_WEIGHT>
364.394

> <EXACT_MASS>
364.152203113

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
39.12778724198667

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4R,5R,6S)-2-{[(2R)-5-hydroxy-2-[(1E,3E)-penta-1,3-dien-1-yl]-2,3-dihydro-1-benzofuran-7-yl]oxy}-6-methyloxane-3,4,5-triol

> <ALOGPS_LOGP>
1.83

> <JCHEM_LOGP>
1.7320418479999995

> <ALOGPS_LOGS>
-2.46

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.215443255807227

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.904906931754669

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6122003788938786

> <JCHEM_POLAR_SURFACE_AREA>
108.61000000000001

> <JCHEM_REFRACTIVITY>
95.21830000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.27e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4R,5R,6S)-2-{[(2R)-5-hydroxy-2-[(1E,3E)-penta-1,3-dien-1-yl]-2,3-dihydro-1-benzofuran-7-yl]oxy}-6-methyloxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 50 52  0  0  0  0  0  0  0  0999 V2000
    7.0391    0.6793    2.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9183    0.1508    1.5694 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1614    1.0019    0.9160 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0556    0.5341    0.1117 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3176    1.4143   -0.5298 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1785    1.0309   -1.3670 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5021   -0.0933   -2.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1385   -0.5601   -2.6911 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5934   -1.2145   -3.7715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7449   -1.5372   -3.8471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2457   -2.2100   -4.9833 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5624   -1.1925   -2.8057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0188   -0.5220   -1.6923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8766   -0.2044   -0.6881 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7293    0.4264    0.5152 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0215   -0.4520    1.5694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3623   -0.7808    1.6181 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5716   -1.7418    2.7513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2137    0.4567    1.9140 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5337    0.0578    2.0092 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0036    1.3831    0.7114 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7618    2.5141    0.8737 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5428    1.7030    0.6457 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1617    2.3079    1.8433 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3230   -0.2045   -1.6287 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1140    0.4466   -0.6600 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0205    0.6087    1.8508 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8593    1.7403    2.6784 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1172    0.0345    3.2874 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7631   -0.9283    1.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3708    2.0463    0.9844 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7965   -0.5162    0.0059 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5593    2.4644   -0.4373 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7838    1.8588   -1.9594 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0298   -0.9304   -1.8379 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0591    0.2784   -3.2205 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2399   -1.4968   -4.6145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6690   -2.4675   -5.7467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6117   -1.4406   -2.8550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6820    0.7313    0.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7479   -1.1982    0.6723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7259   -2.4625    2.7435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5188   -2.2977    2.6167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6488   -1.1862    3.6968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8803    0.9534    2.8379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9539    0.2894    2.8823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3041    0.7991   -0.1795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6319    2.4663    0.4142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2804    2.3336   -0.2161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9356    3.2508    1.7436 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 13 25  2  0
 25 26  1  0
 26  6  1  0
 25  8  1  0
 23 15  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  6 34  1  6
  7 35  1  0
  7 36  1  0
  9 37  1  0
 11 38  1  0
 12 39  1  0
 15 40  1  1
 17 41  1  6
 18 42  1  0
 18 43  1  0
 18 44  1  0
 19 45  1  1
 20 46  1  0
 21 47  1  6
 22 48  1  0
 23 49  1  6
 24 50  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       7.039   0.679   2.380  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.918   0.151   1.569  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.161   1.002   0.916  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.056   0.534   0.112  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.318   1.414  -0.530  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.179   1.031  -1.367  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.502  -0.093  -2.337  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.139  -0.560  -2.691  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.593  -1.214  -3.772  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.745  -1.537  -3.847  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.246  -2.210  -4.983  0.00  0.00           O+0
HETATM   12  C   UNK     0      -1.562  -1.192  -2.806  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.019  -0.522  -1.692  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.877  -0.204  -0.688  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.729   0.426   0.515  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.022  -0.452   1.569  0.00  0.00           O+0
HETATM   17  C   UNK     0      -3.362  -0.781   1.618  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.572  -1.742   2.751  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.214   0.457   1.914  0.00  0.00           C+0
HETATM   20  O   UNK     0      -5.534   0.058   2.009  0.00  0.00           O+0
HETATM   21  C   UNK     0      -4.004   1.383   0.711  0.00  0.00           C+0
HETATM   22  O   UNK     0      -4.762   2.514   0.874  0.00  0.00           O+0
HETATM   23  C   UNK     0      -2.543   1.703   0.646  0.00  0.00           C+0
HETATM   24  O   UNK     0      -2.162   2.308   1.843  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.323  -0.205  -1.629  0.00  0.00           C+0
HETATM   26  O   UNK     0       1.114   0.447  -0.660  0.00  0.00           O+0
HETATM   27  H   UNK     0       8.021   0.609   1.851  0.00  0.00           H+0
HETATM   28  H   UNK     0       6.859   1.740   2.678  0.00  0.00           H+0
HETATM   29  H   UNK     0       7.117   0.035   3.287  0.00  0.00           H+0
HETATM   30  H   UNK     0       5.763  -0.928   1.546  0.00  0.00           H+0
HETATM   31  H   UNK     0       5.371   2.046   0.984  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.797  -0.516   0.006  0.00  0.00           H+0
HETATM   33  H   UNK     0       3.559   2.464  -0.437  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.784   1.859  -1.959  0.00  0.00           H+0
HETATM   35  H   UNK     0       3.030  -0.930  -1.838  0.00  0.00           H+0
HETATM   36  H   UNK     0       3.059   0.278  -3.220  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.240  -1.497  -4.614  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.669  -2.467  -5.747  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.612  -1.441  -2.855  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.682   0.731   0.681  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.748  -1.198   0.672  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.726  -2.462   2.744  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.519  -2.298   2.617  0.00  0.00           H+0
HETATM   44  H   UNK     0      -3.649  -1.186   3.697  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.880   0.953   2.838  0.00  0.00           H+0
HETATM   46  H   UNK     0      -5.954   0.289   2.882  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.304   0.799  -0.180  0.00  0.00           H+0
HETATM   48  H   UNK     0      -5.632   2.466   0.414  0.00  0.00           H+0
HETATM   49  H   UNK     0      -2.280   2.334  -0.216  0.00  0.00           H+0
HETATM   50  H   UNK     0      -1.936   3.251   1.744  0.00  0.00           H+0
CONECT    1    2   27   28   29                                             
CONECT    2    1    3   30                                                  
CONECT    3    2    4   31                                                  
CONECT    4    3    5   32                                                  
CONECT    5    4    6   33                                                  
CONECT    6    5    7   26   34                                             
CONECT    7    6    8   35   36                                             
CONECT    8    7    9   25                                                  
CONECT    9    8   10   37                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10   38                                                       
CONECT   12   10   13   39                                                  
CONECT   13   12   14   25                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   23   40                                             
CONECT   16   15   17                                                       
CONECT   17   16   18   19   41                                             
CONECT   18   17   42   43   44                                             
CONECT   19   17   20   21   45                                             
CONECT   20   19   46                                                       
CONECT   21   19   22   23   47                                             
CONECT   22   21   48                                                       
CONECT   23   21   24   15   49                                             
CONECT   24   23   50                                                       
CONECT   25   13   26    8                                                  
CONECT   26   25    6                                                       
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    2                                                            
CONECT   31    3                                                            
CONECT   32    4                                                            
CONECT   33    5                                                            
CONECT   34    6                                                            
CONECT   35    7                                                            
CONECT   36    7                                                            
CONECT   37    9                                                            
CONECT   38   11                                                            
CONECT   39   12                                                            
CONECT   40   15                                                            
CONECT   41   17                                                            
CONECT   42   18                                                            
CONECT   43   18                                                            
CONECT   44   18                                                            
CONECT   45   19                                                            
CONECT   46   20                                                            
CONECT   47   21                                                            
CONECT   48   22                                                            
CONECT   49   23                                                            
CONECT   50   24                                                            
MASTER        0    0    0    0    0    0    0    0   50    0  104    0
END

RDKit          3D

50 52  0  0  0  0  0  0  0  0999 V2000
    7.0391    0.6793    2.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9183    0.1508    1.5694 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1614    1.0019    0.9160 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0556    0.5341    0.1117 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3176    1.4143   -0.5298 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1785    1.0309   -1.3670 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5021   -0.0933   -2.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1385   -0.5601   -2.6911 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5934   -1.2145   -3.7715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7449   -1.5372   -3.8471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2457   -2.2100   -4.9833 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5624   -1.1925   -2.8057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0188   -0.5220   -1.6923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8766   -0.2044   -0.6881 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7293    0.4264    0.5152 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0215   -0.4520    1.5694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3623   -0.7808    1.6181 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5716   -1.7418    2.7513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2137    0.4567    1.9140 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5337    0.0578    2.0092 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0036    1.3831    0.7114 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7618    2.5141    0.8737 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5428    1.7030    0.6457 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1617    2.3079    1.8433 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3230   -0.2045   -1.6287 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1140    0.4466   -0.6600 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0205    0.6087    1.8508 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8593    1.7403    2.6784 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1172    0.0345    3.2874 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7631   -0.9283    1.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3708    2.0463    0.9844 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7965   -0.5162    0.0059 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5593    2.4644   -0.4373 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7838    1.8588   -1.9594 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0298   -0.9304   -1.8379 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0591    0.2784   -3.2205 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2399   -1.4968   -4.6145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6690   -2.4675   -5.7467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6117   -1.4406   -2.8550 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6820    0.7313    0.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7479   -1.1982    0.6723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7259   -2.4625    2.7435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5188   -2.2977    2.6167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6488   -1.1862    3.6968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8803    0.9534    2.8379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9539    0.2894    2.8823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3041    0.7991   -0.1795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6319    2.4663    0.4142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2804    2.3336   -0.2161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9356    3.2508    1.7436 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 13 25  2  0
 25 26  1  0
 26  6  1  0
 25  8  1  0
 23 15  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  6 34  1  6
  7 35  1  0
  7 36  1  0
  9 37  1  0
 11 38  1  0
 12 39  1  0
 15 40  1  1
 17 41  1  6
 18 42  1  0
 18 43  1  0
 18 44  1  0
 19 45  1  1
 20 46  1  0
 21 47  1  6
 22 48  1  0
 23 49  1  6
 24 50  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₉H₂₄O₇

Average Mass

364.3940 Da

Monoisotopic Mass

364.15220 Da

IUPAC Name

(2S,3R,4R,5R,6S)-2-{[(2R)-5-hydroxy-2-[(1E,3E)-penta-1,3-dien-1-yl]-2,3-dihydro-1-benzofuran-7-yl]oxy}-6-methyloxane-3,4,5-triol

Traditional Name

(2S,3R,4R,5R,6S)-2-{[(2R)-5-hydroxy-2-[(1E,3E)-penta-1,3-dien-1-yl]-2,3-dihydro-1-benzofuran-7-yl]oxy}-6-methyloxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

C\C=C\C=C\[C@H]1CC2=CC(O)=CC(O[C@@H]3O[C@@H](C)[C@H](O)[C@@H](O)[C@H]3O)=C2O1

InChI Identifier

InChI=1S/C19H24O7/c1-3-4-5-6-13-8-11-7-12(20)9-14(18(11)25-13)26-19-17(23)16(22)15(21)10(2)24-19/h3-7,9-10,13,15-17,19-23H,8H2,1-2H3/b4-3+,6-5+/t10-,13-,15-,16+,17+,19-/m0/s1

InChI Key

IXCFJQNYIPECMG-SCDWHHIESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Amycolatopsis sp.	NPAtlas	24759001

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.83	ALOGPS
logP	1.73	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	9.9	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	108.61 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	95.22 m³·mol⁻¹	ChemAxon
Polarizability	39.13 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA015642

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

32675024

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139587450

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kwon Y, Kim SH, Shin Y, Bae M, Kim BY, Lee SK, Oh KB, Shin J, Oh DC: A new benzofuran glycoside and indole alkaloids from a sponge-associated rare actinomycete, Amycolatopsis sp. Mar Drugs. 2014 Apr 22;12(4):2326-40. doi: 10.3390/md12042326. [PubMed:24759001 ]

Showing NP-Card for Amycofuran (NP0012768)

MOL for NP0012768 (Amycofuran)

3D MOL for NP0012768 (Amycofuran)

3D SDF for NP0012768 (Amycofuran)

3D-SDF for NP0012768 (Amycofuran)

PDB for NP0012768 (Amycofuran)

3D PDB for NP0012768 (Amycofuran)

SMILES for NP0012768 (Amycofuran)

INCHI for NP0012768 (Amycofuran)

Structure for NP0012768 (Amycofuran)

3D Structure for NP0012768 (Amycofuran)