NP-MRD: Showing NP-Card for Cystomanamide D (NP0012731)

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Record Information

Version

2.0

Created at

2021-01-05 22:02:04 UTC

Updated at

2021-07-15 17:12:33 UTC

NP-MRD ID

NP0012731

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cystomanamide D

Provided By

NPAtlas

Description

Cystomanamide D is found in Cystobacter and Cystobacter fuscus. Based on a literature review very few articles have been published on Cystomanamide D.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307012122003D          

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M  END

     RDKit          3D

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M  END


  Mrv1652307012122003D          

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   -2.2077   -1.5768    1.7946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1828   -2.3711    0.9062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5031   -2.1907   -0.7477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3820   -4.5356    1.2258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7298   -5.0098   -0.4459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1010   -4.6264    0.9509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5119   -5.4311   -1.7153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4697   -3.2203   -1.7322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6000   -4.6004   -1.2938 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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  2  4  1  0  0  0  0
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  5  6  1  0  0  0  0
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  9 10  1  0  0  0  0
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 39 41  2  0  0  0  0
  9 42  1  0  0  0  0
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 50 52  1  0  0  0  0
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 33 28  1  0  0  0  0
 52 44  1  0  0  0  0
  1 54  1  0  0  0  0
  1 55  1  0  0  0  0
  1 56  1  0  0  0  0
  2 57  1  1  0  0  0
  3 58  1  0  0  0  0
  3 59  1  0  0  0  0
  3 60  1  0  0  0  0
  4 61  1  0  0  0  0
  4 62  1  0  0  0  0
  5 63  1  0  0  0  0
  5 64  1  0  0  0  0
  6 65  1  0  0  0  0
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  7 67  1  0  0  0  0
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  9 71  1  1  0  0  0
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 47100  1  0  0  0  0
 47101  1  0  0  0  0
 48102  1  1  0  0  0
 49103  1  0  0  0  0
 50104  1  1  0  0  0
 51105  1  0  0  0  0
 52106  1  6  0  0  0
 53107  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0012731

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@]([H])(N([H])C(=O)[C@@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)C([H])([H])[C@]([H])(N([H])C([H])([H])[C@@]1(O[H])OC([H])([H])[C@@]([H])(O[H])[C@@]([H])(O[H])[C@]1([H])O[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C(=O)N([H])[H])[C@@]([H])(O[H])C(=O)N([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C34H54N6O13/c1-18(2)9-5-3-8-12-20(37-17-34(52)29(46)27(44)23(41)16-53-34)14-25(43)38-21(15-24(35)42)31(48)40-26(28(45)30(36)47)32(49)39-22(33(50)51)13-19-10-6-4-7-11-19/h4,6-7,10-11,18,20-23,26-29,37,41,44-46,52H,3,5,8-9,12-17H2,1-2H3,(H2,35,42)(H2,36,47)(H,38,43)(H,39,49)(H,40,48)(H,50,51)/t20-,21-,22-,23-,26+,27-,28-,29+,34-/m1/s1

> <INCHI_KEY>
LEKPXUJAHHIWPQ-JUSKRKDISA-N

> <FORMULA>
C34H54N6O13

> <MOLECULAR_WEIGHT>
754.835

> <EXACT_MASS>
754.374885823

> <JCHEM_ACCEPTOR_COUNT>
14

> <JCHEM_ATOM_COUNT>
107

> <JCHEM_AVERAGE_POLARIZABILITY>
78.04627620404088

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
12

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-[(2S,3R)-3-carbamoyl-2-[(2R)-3-carbamoyl-2-[(3R)-9-methyl-3-({[(2R,3S,4R,5R)-2,3,4,5-tetrahydroxyoxan-2-yl]methyl}amino)decanamido]propanamido]-3-hydroxypropanamido]-3-phenylpropanoic acid

> <ALOGPS_LOGP>
-0.49

> <JCHEM_LOGP>
-5.307276907699576

> <ALOGPS_LOGS>
-3.47

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.641644290924454

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.4002557748786293

> <JCHEM_PKA_STRONGEST_BASIC>
8.165148685240469

> <JCHEM_POLAR_SURFACE_AREA>
333.19000000000005

> <JCHEM_REFRACTIVITY>
183.63790000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
23

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.56e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-[(2S,3R)-3-carbamoyl-2-[(2R)-3-carbamoyl-2-[(3R)-9-methyl-3-({[(2R,3S,4R,5R)-2,3,4,5-tetrahydroxyoxan-2-yl]methyl}amino)decanamido]propanamido]-3-hydroxypropanamido]-3-phenylpropanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

107108  0  0  0  0  0  0  0  0999 V2000
  -10.8838    1.8408   -0.6434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8759    1.4946    0.4469 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.8065   -0.0201    0.5630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5189    1.9884   -0.0392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2171    1.2708   -1.3224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9087    1.7021   -1.9011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7765    1.4321   -0.9262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4712    1.8568   -1.5446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3105    1.6331   -0.6247 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0091    2.0746   -1.2569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8725    1.8463   -0.3222 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0853    1.1898    0.7238 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4196    2.3582   -0.6011 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5804    2.1904    0.2408 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6881    3.4637    1.1076 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4625    3.6201    1.9186 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4112    3.1000    3.2347 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5248    4.2117    1.4367 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8090    1.9989   -0.5425 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7177    1.9781   -1.7920 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0658    1.8444    0.0450 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2972    1.6728   -0.6497 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9593    0.4041   -0.3568 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3569   -0.3942    0.4382 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2008    0.0116   -0.8862 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7655   -1.2718   -0.5276 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9902   -0.9693    0.3096 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6482   -2.2077    0.7239 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6748   -2.7409   -0.0438 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2815   -3.9132    0.3571 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8696   -4.5487    1.5123 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8335   -3.9945    2.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2205   -2.8322    1.8890 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0270   -2.0453   -1.7368 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7795   -1.5688   -2.8613 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5545   -3.3243   -1.6518 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2476    2.8283   -0.5173 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7016    4.0056   -1.0182 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7219    3.0573    0.8432 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3447    2.1116    1.6703 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.5675    4.2165    1.3489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2527    0.3556   -0.0003 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1164   -0.7717   -0.8621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0722   -2.0121    0.0409 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9823   -1.9431    0.9029 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2055   -1.9906    0.8702 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3002   -2.5699    0.2651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1039   -4.0821    0.2379 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8708   -4.6315   -0.7742 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6506   -4.4100    0.0026 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5919   -5.5773   -0.7600 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9677   -3.2807   -0.7635 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6413   -3.6673   -0.9558 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4843    2.6724   -1.2406 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8739    2.1013   -0.1909 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9805    0.9674   -1.3037 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1368    1.9127    1.4200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7688   -0.3722    0.6975 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4357   -0.3989    1.3923 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2064   -0.5020   -0.3764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7709    1.7117    0.7445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4957    3.0764   -0.1620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1593    0.1741   -1.1571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0159    1.4434   -2.0819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6843    1.2183   -2.8522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9380    2.8052   -2.1049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7880    0.3874   -0.5712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9199    2.0728   -0.0223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2788    1.2562   -2.4684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5446    2.9254   -1.8065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4688    2.3779    0.2249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8585    1.5175   -2.2106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0896    3.1432   -1.5492 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5556    2.9010   -1.4775 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3754    1.3949    0.9707 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5423    3.3401    1.7687 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8818    4.3045    0.4089 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1513    2.0743    3.3834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6056    3.6311    4.1088 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1239    1.8534    1.1074 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0288    1.6448   -1.7529 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7683    0.5970   -1.5431 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0792   -1.8424    0.1493 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6925   -0.3330    1.1766 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7381   -0.3474   -0.2626 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9552   -2.1939   -0.9401 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0802   -4.3429   -0.2236 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2774   -5.4529    1.8966 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4801   -4.4618    3.1895 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4171   -2.3690    2.4429 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9864   -3.8093   -2.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1436    2.5963   -1.1503 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6130    4.7075   -0.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3303    2.2310    1.9492 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8201    1.2871    2.0064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0380    0.2288    0.6582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2197   -0.7335   -1.5061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9820   -0.8252   -1.5419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2077   -1.5768    1.7946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1828   -2.3711    0.9062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5031   -2.1907   -0.7477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3820   -4.5356    1.2258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7298   -5.0098   -0.4459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1010   -4.6264    0.9509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5119   -5.4311   -1.7153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4697   -3.2203   -1.7322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6000   -4.6004   -1.2938 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 16 18  2  0
 14 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  2  0
 29 30  1  0
 30 31  2  0
 31 32  1  0
 32 33  2  0
 26 34  1  0
 34 35  2  0
 34 36  1  0
 22 37  1  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 39 41  2  0
  9 42  1  0
 42 43  1  0
 43 44  1  0
 44 45  1  1
 44 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 48 50  1  0
 50 51  1  0
 50 52  1  0
 52 53  1  0
 33 28  1  0
 52 44  1  0
  1 54  1  0
  1 55  1  0
  1 56  1  0
  2 57  1  1
  3 58  1  0
  3 59  1  0
  3 60  1  0
  4 61  1  0
  4 62  1  0
  5 63  1  0
  5 64  1  0
  6 65  1  0
  6 66  1  0
  7 67  1  0
  7 68  1  0
  8 69  1  0
  8 70  1  0
  9 71  1  1
 10 72  1  0
 10 73  1  0
 13 74  1  0
 14 75  1  1
 15 76  1  0
 15 77  1  0
 17 78  1  0
 17 79  1  0
 21 80  1  0
 22 81  1  6
 25 82  1  0
 26 83  1  1
 27 84  1  0
 27 85  1  0
 29 86  1  0
 30 87  1  0
 31 88  1  0
 32 89  1  0
 33 90  1  0
 36 91  1  0
 37 92  1  6
 38 93  1  0
 40 94  1  0
 40 95  1  0
 42 96  1  0
 43 97  1  0
 43 98  1  0
 45 99  1  0
 47100  1  0
 47101  1  0
 48102  1  1
 49103  1  0
 50104  1  1
 51105  1  0
 52106  1  6
 53107  1  0
M  END

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0     -10.884   1.841  -0.643  0.00  0.00           C+0
HETATM    2  C   UNK     0      -9.876   1.495   0.447  0.00  0.00           C+0
HETATM    3  C   UNK     0      -9.806  -0.020   0.563  0.00  0.00           C+0
HETATM    4  C   UNK     0      -8.519   1.988  -0.039  0.00  0.00           C+0
HETATM    5  C   UNK     0      -8.217   1.271  -1.322  0.00  0.00           C+0
HETATM    6  C   UNK     0      -6.909   1.702  -1.901  0.00  0.00           C+0
HETATM    7  C   UNK     0      -5.777   1.432  -0.926  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.471   1.857  -1.545  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.311   1.633  -0.625  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.009   2.075  -1.257  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.873   1.846  -0.322  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.085   1.190   0.724  0.00  0.00           O+0
HETATM   13  N   UNK     0       0.420   2.358  -0.601  0.00  0.00           N+0
HETATM   14  C   UNK     0       1.580   2.190   0.241  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.688   3.464   1.108  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.463   3.620   1.919  0.00  0.00           C+0
HETATM   17  N   UNK     0       0.411   3.100   3.235  0.00  0.00           N+0
HETATM   18  O   UNK     0      -0.525   4.212   1.437  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.809   1.999  -0.543  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.718   1.978  -1.792  0.00  0.00           O+0
HETATM   21  N   UNK     0       4.066   1.844   0.045  0.00  0.00           N+0
HETATM   22  C   UNK     0       5.297   1.673  -0.650  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.959   0.404  -0.357  0.00  0.00           C+0
HETATM   24  O   UNK     0       5.357  -0.394   0.438  0.00  0.00           O+0
HETATM   25  N   UNK     0       7.201   0.012  -0.886  0.00  0.00           N+0
HETATM   26  C   UNK     0       7.766  -1.272  -0.528  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.990  -0.969   0.310  0.00  0.00           C+0
HETATM   28  C   UNK     0       9.648  -2.208   0.724  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.675  -2.741  -0.044  0.00  0.00           C+0
HETATM   30  C   UNK     0      11.281  -3.913   0.357  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.870  -4.549   1.512  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.834  -3.994   2.272  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.220  -2.832   1.889  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.027  -2.045  -1.737  0.00  0.00           C+0
HETATM   35  O   UNK     0       7.779  -1.569  -2.861  0.00  0.00           O+0
HETATM   36  O   UNK     0       8.555  -3.324  -1.652  0.00  0.00           O+0
HETATM   37  C   UNK     0       6.248   2.828  -0.517  0.00  0.00           C+0
HETATM   38  O   UNK     0       5.702   4.006  -1.018  0.00  0.00           O+0
HETATM   39  C   UNK     0       6.722   3.057   0.843  0.00  0.00           C+0
HETATM   40  N   UNK     0       7.345   2.112   1.670  0.00  0.00           N+0
HETATM   41  O   UNK     0       6.567   4.216   1.349  0.00  0.00           O+0
HETATM   42  N   UNK     0      -3.253   0.356  -0.000  0.00  0.00           N+0
HETATM   43  C   UNK     0      -3.116  -0.772  -0.862  0.00  0.00           C+0
HETATM   44  C   UNK     0      -3.072  -2.012   0.041  0.00  0.00           C+0
HETATM   45  O   UNK     0      -1.982  -1.943   0.903  0.00  0.00           O+0
HETATM   46  O   UNK     0      -4.205  -1.991   0.870  0.00  0.00           O+0
HETATM   47  C   UNK     0      -5.300  -2.570   0.265  0.00  0.00           C+0
HETATM   48  C   UNK     0      -5.104  -4.082   0.238  0.00  0.00           C+0
HETATM   49  O   UNK     0      -5.871  -4.632  -0.774  0.00  0.00           O+0
HETATM   50  C   UNK     0      -3.651  -4.410   0.003  0.00  0.00           C+0
HETATM   51  O   UNK     0      -3.592  -5.577  -0.760  0.00  0.00           O+0
HETATM   52  C   UNK     0      -2.968  -3.281  -0.764  0.00  0.00           C+0
HETATM   53  O   UNK     0      -1.641  -3.667  -0.956  0.00  0.00           O+0
HETATM   54  H   UNK     0     -10.484   2.672  -1.241  0.00  0.00           H+0
HETATM   55  H   UNK     0     -11.874   2.101  -0.191  0.00  0.00           H+0
HETATM   56  H   UNK     0     -10.980   0.967  -1.304  0.00  0.00           H+0
HETATM   57  H   UNK     0     -10.137   1.913   1.420  0.00  0.00           H+0
HETATM   58  H   UNK     0      -8.769  -0.372   0.698  0.00  0.00           H+0
HETATM   59  H   UNK     0     -10.436  -0.399   1.392  0.00  0.00           H+0
HETATM   60  H   UNK     0     -10.206  -0.502  -0.376  0.00  0.00           H+0
HETATM   61  H   UNK     0      -7.771   1.712   0.745  0.00  0.00           H+0
HETATM   62  H   UNK     0      -8.496   3.076  -0.162  0.00  0.00           H+0
HETATM   63  H   UNK     0      -8.159   0.174  -1.157  0.00  0.00           H+0
HETATM   64  H   UNK     0      -9.016   1.443  -2.082  0.00  0.00           H+0
HETATM   65  H   UNK     0      -6.684   1.218  -2.852  0.00  0.00           H+0
HETATM   66  H   UNK     0      -6.938   2.805  -2.105  0.00  0.00           H+0
HETATM   67  H   UNK     0      -5.788   0.387  -0.571  0.00  0.00           H+0
HETATM   68  H   UNK     0      -5.920   2.073  -0.022  0.00  0.00           H+0
HETATM   69  H   UNK     0      -4.279   1.256  -2.468  0.00  0.00           H+0
HETATM   70  H   UNK     0      -4.545   2.925  -1.807  0.00  0.00           H+0
HETATM   71  H   UNK     0      -3.469   2.378   0.225  0.00  0.00           H+0
HETATM   72  H   UNK     0      -1.859   1.518  -2.211  0.00  0.00           H+0
HETATM   73  H   UNK     0      -2.090   3.143  -1.549  0.00  0.00           H+0
HETATM   74  H   UNK     0       0.556   2.901  -1.478  0.00  0.00           H+0
HETATM   75  H   UNK     0       1.375   1.395   0.971  0.00  0.00           H+0
HETATM   76  H   UNK     0       2.542   3.340   1.769  0.00  0.00           H+0
HETATM   77  H   UNK     0       1.882   4.305   0.409  0.00  0.00           H+0
HETATM   78  H   UNK     0       0.151   2.074   3.383  0.00  0.00           H+0
HETATM   79  H   UNK     0       0.606   3.631   4.109  0.00  0.00           H+0
HETATM   80  H   UNK     0       4.124   1.853   1.107  0.00  0.00           H+0
HETATM   81  H   UNK     0       5.029   1.645  -1.753  0.00  0.00           H+0
HETATM   82  H   UNK     0       7.768   0.597  -1.543  0.00  0.00           H+0
HETATM   83  H   UNK     0       7.079  -1.842   0.149  0.00  0.00           H+0
HETATM   84  H   UNK     0       8.693  -0.333   1.177  0.00  0.00           H+0
HETATM   85  H   UNK     0       9.738  -0.347  -0.263  0.00  0.00           H+0
HETATM   86  H   UNK     0      10.955  -2.194  -0.940  0.00  0.00           H+0
HETATM   87  H   UNK     0      12.080  -4.343  -0.224  0.00  0.00           H+0
HETATM   88  H   UNK     0      11.277  -5.453   1.897  0.00  0.00           H+0
HETATM   89  H   UNK     0       9.480  -4.462   3.189  0.00  0.00           H+0
HETATM   90  H   UNK     0       8.417  -2.369   2.443  0.00  0.00           H+0
HETATM   91  H   UNK     0       8.986  -3.809  -2.406  0.00  0.00           H+0
HETATM   92  H   UNK     0       7.144   2.596  -1.150  0.00  0.00           H+0
HETATM   93  H   UNK     0       5.613   4.707  -0.348  0.00  0.00           H+0
HETATM   94  H   UNK     0       8.330   2.231   1.949  0.00  0.00           H+0
HETATM   95  H   UNK     0       6.820   1.287   2.006  0.00  0.00           H+0
HETATM   96  H   UNK     0      -4.038   0.229   0.658  0.00  0.00           H+0
HETATM   97  H   UNK     0      -2.220  -0.734  -1.506  0.00  0.00           H+0
HETATM   98  H   UNK     0      -3.982  -0.825  -1.542  0.00  0.00           H+0
HETATM   99  H   UNK     0      -2.208  -1.577   1.795  0.00  0.00           H+0
HETATM  100  H   UNK     0      -6.183  -2.371   0.906  0.00  0.00           H+0
HETATM  101  H   UNK     0      -5.503  -2.191  -0.748  0.00  0.00           H+0
HETATM  102  H   UNK     0      -5.382  -4.536   1.226  0.00  0.00           H+0
HETATM  103  H   UNK     0      -6.730  -5.010  -0.446  0.00  0.00           H+0
HETATM  104  H   UNK     0      -3.101  -4.626   0.951  0.00  0.00           H+0
HETATM  105  H   UNK     0      -3.512  -5.431  -1.715  0.00  0.00           H+0
HETATM  106  H   UNK     0      -3.470  -3.220  -1.732  0.00  0.00           H+0
HETATM  107  H   UNK     0      -1.600  -4.600  -1.294  0.00  0.00           H+0
CONECT    1    2   54   55   56                                             
CONECT    2    1    3    4   57                                             
CONECT    3    2   58   59   60                                             
CONECT    4    2    5   61   62                                             
CONECT    5    4    6   63   64                                             
CONECT    6    5    7   65   66                                             
CONECT    7    6    8   67   68                                             
CONECT    8    7    9   69   70                                             
CONECT    9    8   10   42   71                                             
CONECT   10    9   11   72   73                                             
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   74                                                  
CONECT   14   13   15   19   75                                             
CONECT   15   14   16   76   77                                             
CONECT   16   15   17   18                                                  
CONECT   17   16   78   79                                                  
CONECT   18   16                                                            
CONECT   19   14   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   80                                                  
CONECT   22   21   23   37   81                                             
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   82                                                  
CONECT   26   25   27   34   83                                             
CONECT   27   26   28   84   85                                             
CONECT   28   27   29   33                                                  
CONECT   29   28   30   86                                                  
CONECT   30   29   31   87                                                  
CONECT   31   30   32   88                                                  
CONECT   32   31   33   89                                                  
CONECT   33   32   28   90                                                  
CONECT   34   26   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   91                                                       
CONECT   37   22   38   39   92                                             
CONECT   38   37   93                                                       
CONECT   39   37   40   41                                                  
CONECT   40   39   94   95                                                  
CONECT   41   39                                                            
CONECT   42    9   43   96                                                  
CONECT   43   42   44   97   98                                             
CONECT   44   43   45   46   52                                             
CONECT   45   44   99                                                       
CONECT   46   44   47                                                       
CONECT   47   46   48  100  101                                             
CONECT   48   47   49   50  102                                             
CONECT   49   48  103                                                       
CONECT   50   48   51   52  104                                             
CONECT   51   50  105                                                       
CONECT   52   50   53   44  106                                             
CONECT   53   52  107                                                       
CONECT   54    1                                                            
CONECT   55    1                                                            
CONECT   56    1                                                            
CONECT   57    2                                                            
CONECT   58    3                                                            
CONECT   59    3                                                            
CONECT   60    3                                                            
CONECT   61    4                                                            
CONECT   62    4                                                            
CONECT   63    5                                                            
CONECT   64    5                                                            
CONECT   65    6                                                            
CONECT   66    6                                                            
CONECT   67    7                                                            
CONECT   68    7                                                            
CONECT   69    8                                                            
CONECT   70    8                                                            
CONECT   71    9                                                            
CONECT   72   10                                                            
CONECT   73   10                                                            
CONECT   74   13                                                            
CONECT   75   14                                                            
CONECT   76   15                                                            
CONECT   77   15                                                            
CONECT   78   17                                                            
CONECT   79   17                                                            
CONECT   80   21                                                            
CONECT   81   22                                                            
CONECT   82   25                                                            
CONECT   83   26                                                            
CONECT   84   27                                                            
CONECT   85   27                                                            
CONECT   86   29                                                            
CONECT   87   30                                                            
CONECT   88   31                                                            
CONECT   89   32                                                            
CONECT   90   33                                                            
CONECT   91   36                                                            
CONECT   92   37                                                            
CONECT   93   38                                                            
CONECT   94   40                                                            
CONECT   95   40                                                            
CONECT   96   42                                                            
CONECT   97   43                                                            
CONECT   98   43                                                            
CONECT   99   45                                                            
CONECT  100   47                                                            
CONECT  101   47                                                            
CONECT  102   48                                                            
CONECT  103   49                                                            
CONECT  104   50                                                            
CONECT  105   51                                                            
CONECT  106   52                                                            
CONECT  107   53                                                            
MASTER        0    0    0    0    0    0    0    0  107    0  216    0
END

RDKit          3D

107108  0  0  0  0  0  0  0  0999 V2000
  -10.8838    1.8408   -0.6434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8759    1.4946    0.4469 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.8065   -0.0201    0.5630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5189    1.9884   -0.0392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2171    1.2708   -1.3224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9087    1.7021   -1.9011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7765    1.4321   -0.9262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4712    1.8568   -1.5446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3105    1.6331   -0.6247 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0091    2.0746   -1.2569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8725    1.8463   -0.3222 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0853    1.1898    0.7238 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4196    2.3582   -0.6011 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5804    2.1904    0.2408 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6881    3.4637    1.1076 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4625    3.6201    1.9186 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4112    3.1000    3.2347 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5248    4.2117    1.4367 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8090    1.9989   -0.5425 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7177    1.9781   -1.7920 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0658    1.8444    0.0450 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2972    1.6728   -0.6497 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9593    0.4041   -0.3568 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3569   -0.3942    0.4382 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2008    0.0116   -0.8862 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7655   -1.2718   -0.5276 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9902   -0.9693    0.3096 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6482   -2.2077    0.7239 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6748   -2.7409   -0.0438 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2815   -3.9132    0.3571 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8696   -4.5487    1.5123 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8335   -3.9945    2.2724 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.0270   -2.0453   -1.7368 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.5675    4.2165    1.3489 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1164   -0.7717   -0.8621 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₄H₅₄N₆O₁₃

Average Mass

754.8350 Da

Monoisotopic Mass

754.37489 Da

IUPAC Name

(2R)-2-[(2S,3R)-3-carbamoyl-2-[(2R)-3-carbamoyl-2-[(3R)-9-methyl-3-({[(2R,3S,4R,5R)-2,3,4,5-tetrahydroxyoxan-2-yl]methyl}amino)decanamido]propanamido]-3-hydroxypropanamido]-3-phenylpropanoic acid

Traditional Name

(2R)-2-[(2S,3R)-3-carbamoyl-2-[(2R)-3-carbamoyl-2-[(3R)-9-methyl-3-({[(2R,3S,4R,5R)-2,3,4,5-tetrahydroxyoxan-2-yl]methyl}amino)decanamido]propanamido]-3-hydroxypropanamido]-3-phenylpropanoic acid

CAS Registry Number

Not Available

SMILES

CC(C)CCCCC[C@H](CC(=O)N[C@H](CC(N)=O)C(=O)N[C@@H]([C@@H](O)C(N)=O)C(=O)N[C@H](CC1=CC=CC=C1)C(O)=O)NC[C@@]1(O)OC[C@@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C34H54N6O13/c1-18(2)9-5-3-8-12-20(37-17-34(52)29(46)27(44)23(41)16-53-34)14-25(43)38-21(15-24(35)42)31(48)40-26(28(45)30(36)47)32(49)39-22(33(50)51)13-19-10-6-4-7-11-19/h4,6-7,10-11,18,20-23,26-29,37,41,44-46,52H,3,5,8-9,12-17H2,1-2H3,(H2,35,42)(H2,36,47)(H,38,43)(H,39,49)(H,40,48)(H,50,51)/t20-,21-,22-,23-,26+,27-,28-,29+,34-/m1/s1

InChI Key

LEKPXUJAHHIWPQ-JUSKRKDISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cystobacter	NPAtlas	24735013
Cystobacter fuscus	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.49	ALOGPS
logP	-5.3	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	3.4	ChemAxon
pKa (Strongest Basic)	8.17	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	14	ChemAxon
Hydrogen Donor Count	12	ChemAxon
Polar Surface Area	333.19 Å²	ChemAxon
Rotatable Bond Count	23	ChemAxon
Refractivity	183.64 m³·mol⁻¹	ChemAxon
Polarizability	78.05 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA006150

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78436980

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102129782

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Cystomanamide D (NP0012731)

MOL for NP0012731 (Cystomanamide D)

3D MOL for NP0012731 (Cystomanamide D)

3D SDF for NP0012731 (Cystomanamide D)

3D-SDF for NP0012731 (Cystomanamide D)

PDB for NP0012731 (Cystomanamide D)

3D PDB for NP0012731 (Cystomanamide D)

SMILES for NP0012731 (Cystomanamide D)

INCHI for NP0012731 (Cystomanamide D)

Structure for NP0012731 (Cystomanamide D)

3D Structure for NP0012731 (Cystomanamide D)