Np mrd loader

Record Information
Version2.0
Created at2021-01-05 21:59:17 UTC
Updated at2021-07-15 17:12:22 UTC
NP-MRD IDNP0012658
Secondary Accession NumbersNone
Natural Product Identification
Common NameChaiyaphumine A
Provided ByNPAtlasNPAtlas Logo
Description Chaiyaphumine A is found in Xenorhabdus. Chaiyaphumine A was first documented in 2014 (PMID: 24673206). Based on a literature review very few articles have been published on N-[(3S,6R,7S,10R,13R,18aS)-10-benzyl-1,8,11-trihydroxy-3-[(1H-indol-3-yl)methyl]-6,13-dimethyl-4,14-dioxo-3H,4H,6H,7H,10H,13H,14H,16H,17H,18H,18aH-pyrrolo[2,1-f]1-oxa-4,7,10,13-tetraazacyclohexadecan-7-yl]-2-phenylethanimidic acid.
Structure
Thumb
Synonyms
ValueSource
N-[(3S,6R,7S,10R,13R,18AS)-10-benzyl-1,8,11-trihydroxy-3-[(1H-indol-3-yl)methyl]-6,13-dimethyl-4,14-dioxo-3H,4H,6H,7H,10H,13H,14H,16H,17H,18H,18ah-pyrrolo[2,1-F]1-oxa-4,7,10,13-tetraazacyclohexadecan-7-yl]-2-phenylethanimidateGenerator
Chemical FormulaC40H44N6O7
Average Mass720.8270 Da
Monoisotopic Mass720.32715 Da
IUPAC NameN-[(3S,6R,7S,10R,13R,18aS)-10-benzyl-3-[(1H-indol-3-yl)methyl]-6,13-dimethyl-1,4,8,11,14-pentaoxo-hexadecahydro-1H-pyrrolo[2,1-f]1-oxa-4,7,10,13-tetraazacyclohexadecan-7-yl]-2-phenylacetamide
Traditional NameN-[(3S,6R,7S,10R,13R,18aS)-10-benzyl-3-(1H-indol-3-ylmethyl)-6,13-dimethyl-1,4,8,11,14-pentaoxo-dodecahydropyrrolo[2,1-f]1-oxa-4,7,10,13-tetraazacyclohexadecan-7-yl]-2-phenylacetamide
CAS Registry NumberNot Available
SMILES
C[C@H]1OC(=O)[C@H](CC2=CNC3=CC=CC=C23)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](C)NC(=O)[C@@H](CC2=CC=CC=C2)NC(=O)[C@H]1NC(=O)CC1=CC=CC=C1
InChI Identifier
InChI=1S/C40H44N6O7/c1-24-39(51)46-19-11-18-33(46)37(49)44-32(22-28-23-41-30-17-10-9-16-29(28)30)40(52)53-25(2)35(45-34(47)21-27-14-7-4-8-15-27)38(50)43-31(36(48)42-24)20-26-12-5-3-6-13-26/h3-10,12-17,23-25,31-33,35,41H,11,18-22H2,1-2H3,(H,42,48)(H,43,50)(H,44,49)(H,45,47)/t24-,25-,31-,32+,33+,35+/m1/s1
InChI KeyYZLRYEXQPAXUDX-WRECJYPKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
XenorhabdusNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.38ALOGPS
logP2.65ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)10.55ChemAxon
pKa (Strongest Basic)-2.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area178.8 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity194.34 m³·mol⁻¹ChemAxon
Polarizability76.55 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA000724
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID32033783
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound86302630
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Grundmann F, Kaiser M, Schiell M, Batzer A, Kurz M, Thanwisai A, Chantratita N, Bode HB: Antiparasitic chaiyaphumines from entomopathogenic Xenorhabdus sp. PB61.4. J Nat Prod. 2014 Apr 25;77(4):779-83. doi: 10.1021/np4007525. Epub 2014 Mar 27. [PubMed:24673206 ]