NP-MRD: Showing NP-Card for Pyrenophoric acid (NP0012635)

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Record Information

Version

2.0

Created at

2021-01-05 21:58:21 UTC

Updated at

2021-07-15 17:12:19 UTC

NP-MRD ID

NP0012635

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pyrenophoric acid

Provided By

NPAtlas

Description

Pyrenophoric acid is also known as pyrenophate. Pyrenophoric acid is found in Pyrenophora and Pyrenophora seminiperda. Pyrenophoric acid was first documented in 2014 (PMID: 24641210). Based on a literature review very few articles have been published on Pyrenophoric acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117103D          

 43 43  0  0  0  0            999 V2000
    3.3457   -0.1482    2.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6516    0.4597    1.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8209    0.6046    0.7585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6960    1.1478   -0.6637 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6744    1.3425   -1.2651 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9077    1.4170   -1.2239 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3950    0.3041    1.6127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3720    0.0782    0.8384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0225   -0.1512    0.6653 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4125   -1.5735    0.3042 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9205   -2.5719    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0198   -1.9590   -1.0826 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7539   -1.0281   -2.0306 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1219   -1.2683   -2.0488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3820    0.3663   -1.7586 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1280    1.2145   -2.5908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5687    0.8478   -0.3302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8950    2.1919   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0505    1.0816   -0.0222 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4267    0.8603    3.1528 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014   -0.6282    3.0456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1050   -0.7483    2.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8114    0.4629    1.0776 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7641    1.0944   -0.8138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0935    0.3872    2.6676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8794   -0.0056   -0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6339    0.0518    1.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5433   -1.5784    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0515   -2.3229    1.7636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7165   -2.8303    2.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7513   -3.5462    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3338   -3.0198   -1.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -1.8144   -1.2783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -1.2915   -3.0667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5010   -1.1828   -2.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3057    0.5219   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5368    1.9819   -2.8848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5316    2.8782   -0.8976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8847    2.6485    0.7484 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0973    2.1956   -0.7520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3703    2.0851   -0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6922    0.2661   -0.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0985    1.1789    1.1122 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 17  9  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  3 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  0  0  0  0
  8 26  1  0  0  0  0
  9 27  1  1  0  0  0
 10 28  1  6  0  0  0
 11 29  1  0  0  0  0
 11 30  1  0  0  0  0
 11 31  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
 13 34  1  6  0  0  0
 14 35  1  0  0  0  0
 15 36  1  6  0  0  0
 16 37  1  0  0  0  0
 18 38  1  0  0  0  0
 18 39  1  0  0  0  0
 18 40  1  0  0  0  0
 19 41  1  0  0  0  0
 19 42  1  0  0  0  0
 19 43  1  0  0  0  0
M  END

     RDKit          3D

 43 43  0  0  0  0  0  0  0  0999 V2000
    3.3457   -0.1482    2.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6516    0.4597    1.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8209    0.6046    0.7585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6960    1.1478   -0.6637 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6744    1.3425   -1.2651 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9077    1.4170   -1.2239 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3950    0.3041    1.6127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3720    0.0782    0.8384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0225   -0.1512    0.6653 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4125   -1.5735    0.3042 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9205   -2.5719    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0198   -1.9590   -1.0826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7539   -1.0281   -2.0306 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1219   -1.2683   -2.0488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3820    0.3663   -1.7586 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1280    1.2145   -2.5908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5687    0.8478   -0.3302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8950    2.1919   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0505    1.0816   -0.0222 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4267    0.8603    3.1528 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014   -0.6282    3.0456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1050   -0.7483    2.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8114    0.4629    1.0776 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7641    1.0944   -0.8138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0935    0.3872    2.6676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8794   -0.0056   -0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6339    0.0518    1.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5433   -1.5784    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0515   -2.3229    1.7636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7165   -2.8303    2.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7513   -3.5462    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3338   -3.0198   -1.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -1.8144   -1.2783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -1.2915   -3.0667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5010   -1.1828   -2.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3057    0.5219   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5368    1.9819   -2.8848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5316    2.8782   -0.8976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8847    2.6485    0.7484 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0973    2.1956   -0.7520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3703    2.0851   -0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6922    0.2661   -0.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0985    1.1789    1.1122 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  2  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  6
 17 19  1  0
 17  9  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  1
 10 28  1  6
 11 29  1  0
 11 30  1  0
 11 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  6
 14 35  1  0
 15 36  1  6
 16 37  1  0
 18 38  1  0
 18 39  1  0
 18 40  1  0
 19 41  1  0
 19 42  1  0
 19 43  1  0
M  END


  Mrv1652306242117103D          

 43 43  0  0  0  0            999 V2000
    3.3457   -0.1482    2.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6516    0.4597    1.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8209    0.6046    0.7585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6960    1.1478   -0.6637 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6744    1.3425   -1.2651 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9077    1.4170   -1.2239 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3950    0.3041    1.6127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3720    0.0782    0.8384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0225   -0.1512    0.6653 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4125   -1.5735    0.3042 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9205   -2.5719    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0198   -1.9590   -1.0826 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7539   -1.0281   -2.0306 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1219   -1.2683   -2.0488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3820    0.3663   -1.7586 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1280    1.2145   -2.5908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5687    0.8478   -0.3302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8950    2.1919   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0505    1.0816   -0.0222 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4267    0.8603    3.1528 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014   -0.6282    3.0456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1050   -0.7483    2.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8114    0.4629    1.0776 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7641    1.0944   -0.8138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0935    0.3872    2.6676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8794   -0.0056   -0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6339    0.0518    1.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5433   -1.5784    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0515   -2.3229    1.7636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7165   -2.8303    2.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7513   -3.5462    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3338   -3.0198   -1.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -1.8144   -1.2783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -1.2915   -3.0667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5010   -1.1828   -2.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3057    0.5219   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5368    1.9819   -2.8848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5316    2.8782   -0.8976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8847    2.6485    0.7484 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0973    2.1956   -0.7520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3703    2.0851   -0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6922    0.2661   -0.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0985    1.1789    1.1122 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 17  9  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  3 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  0  0  0  0
  8 26  1  0  0  0  0
  9 27  1  1  0  0  0
 10 28  1  6  0  0  0
 11 29  1  0  0  0  0
 11 30  1  0  0  0  0
 11 31  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
 13 34  1  6  0  0  0
 14 35  1  0  0  0  0
 15 36  1  6  0  0  0
 16 37  1  0  0  0  0
 18 38  1  0  0  0  0
 18 39  1  0  0  0  0
 18 40  1  0  0  0  0
 19 41  1  0  0  0  0
 19 42  1  0  0  0  0
 19 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0012635

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C(\[H])=C(/C(/[H])=C(\[H])[C@]1([H])[C@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(O[H])[C@@]([H])(O[H])C1(C([H])([H])[H])C([H])([H])[H])\C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O4/c1-9(7-13(17)18)5-6-11-10(2)8-12(16)14(19)15(11,3)4/h5-7,10-12,14,16,19H,8H2,1-4H3,(H,17,18)/b6-5+,9-7-/t10-,11-,12-,14-/m1/s1

> <INCHI_KEY>
MSGLVYRESMKEPC-ZCJFAIRWSA-N

> <FORMULA>
C15H24O4

> <MOLECULAR_WEIGHT>
268.353

> <EXACT_MASS>
268.167459253

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
29.925667999408233

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4E)-5-[(1S,3S,4R,6R)-3,4-dihydroxy-2,2,6-trimethylcyclohexyl]-3-methylpenta-2,4-dienoic acid

> <ALOGPS_LOGP>
1.75

> <JCHEM_LOGP>
1.860097724666666

> <ALOGPS_LOGS>
-2.66

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.623353895849988

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.822603840291033

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1560928288138994

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
75.1652

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.89e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4E)-5-[(1S,3S,4R,6R)-3,4-dihydroxy-2,2,6-trimethylcyclohexyl]-3-methylpenta-2,4-dienoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 43 43  0  0  0  0  0  0  0  0999 V2000
    3.3457   -0.1482    2.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6516    0.4597    1.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8209    0.6046    0.7585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6960    1.1478   -0.6637 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6744    1.3425   -1.2651 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9077    1.4170   -1.2239 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3950    0.3041    1.6127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3720    0.0782    0.8384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0225   -0.1512    0.6653 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4125   -1.5735    0.3042 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9205   -2.5719    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0198   -1.9590   -1.0826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7539   -1.0281   -2.0306 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1219   -1.2683   -2.0488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3820    0.3663   -1.7586 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1280    1.2145   -2.5908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5687    0.8478   -0.3302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8950    2.1919   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0505    1.0816   -0.0222 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4267    0.8603    3.1528 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014   -0.6282    3.0456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1050   -0.7483    2.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8114    0.4629    1.0776 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7641    1.0944   -0.8138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0935    0.3872    2.6676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8794   -0.0056   -0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6339    0.0518    1.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5433   -1.5784    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0515   -2.3229    1.7636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7165   -2.8303    2.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7513   -3.5462    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3338   -3.0198   -1.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -1.8144   -1.2783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -1.2915   -3.0667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5010   -1.1828   -2.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3057    0.5219   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5368    1.9819   -2.8848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5316    2.8782   -0.8976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8847    2.6485    0.7484 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0973    2.1956   -0.7520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3703    2.0851   -0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6922    0.2661   -0.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0985    1.1789    1.1122 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  2  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  6
 17 19  1  0
 17  9  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  1
 10 28  1  6
 11 29  1  0
 11 30  1  0
 11 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  6
 14 35  1  0
 15 36  1  6
 16 37  1  0
 18 38  1  0
 18 39  1  0
 18 40  1  0
 19 41  1  0
 19 42  1  0
 19 43  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       3.346  -0.148   2.812  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.652   0.460   1.170  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.821   0.605   0.759  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.696   1.148  -0.664  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.674   1.343  -1.265  0.00  0.00           O+0
HETATM    6  O   UNK     0       4.908   1.417  -1.224  0.00  0.00           O+0
HETATM    7  C   UNK     0       1.395   0.304   1.613  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.372   0.078   0.838  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.022  -0.151   0.665  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.413  -1.573   0.304  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.921  -2.572   1.291  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.020  -1.959  -1.083  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.754  -1.028  -2.031  0.00  0.00           C+0
HETATM   14  O   UNK     0      -3.122  -1.268  -2.049  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.382   0.366  -1.759  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.128   1.214  -2.591  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.569   0.848  -0.330  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.895   2.192  -0.255  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.050   1.082  -0.022  0.00  0.00           C+0
HETATM   20  H   UNK     0       3.427   0.860   3.153  0.00  0.00           H+0
HETATM   21  H   UNK     0       2.401  -0.628   3.046  0.00  0.00           H+0
HETATM   22  H   UNK     0       4.105  -0.748   2.417  0.00  0.00           H+0
HETATM   23  H   UNK     0       4.811   0.463   1.078  0.00  0.00           H+0
HETATM   24  H   UNK     0       5.764   1.094  -0.814  0.00  0.00           H+0
HETATM   25  H   UNK     0       1.093   0.387   2.668  0.00  0.00           H+0
HETATM   26  H   UNK     0       0.879  -0.006  -0.280  0.00  0.00           H+0
HETATM   27  H   UNK     0      -1.634   0.052   1.607  0.00  0.00           H+0
HETATM   28  H   UNK     0      -2.543  -1.578   0.333  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.052  -2.323   1.764  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.716  -2.830   2.051  0.00  0.00           H+0
HETATM   31  H   UNK     0      -0.751  -3.546   0.768  0.00  0.00           H+0
HETATM   32  H   UNK     0      -1.334  -3.020  -1.248  0.00  0.00           H+0
HETATM   33  H   UNK     0       0.055  -1.814  -1.278  0.00  0.00           H+0
HETATM   34  H   UNK     0      -1.373  -1.292  -3.067  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.501  -1.183  -2.945  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.306   0.522  -2.007  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.537   1.982  -2.885  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.532   2.878  -0.898  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.885   2.648   0.748  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.097   2.196  -0.752  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.370   2.085  -0.391  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.692   0.266  -0.361  0.00  0.00           H+0
HETATM   43  H   UNK     0      -3.099   1.179   1.112  0.00  0.00           H+0
CONECT    1    2   20   21   22                                             
CONECT    2    1    3    7                                                  
CONECT    3    2    4   23                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4   24                                                       
CONECT    7    2    8   25                                                  
CONECT    8    7    9   26                                                  
CONECT    9    8   10   17   27                                             
CONECT   10    9   11   12   28                                             
CONECT   11   10   29   30   31                                             
CONECT   12   10   13   32   33                                             
CONECT   13   12   14   15   34                                             
CONECT   14   13   35                                                       
CONECT   15   13   16   17   36                                             
CONECT   16   15   37                                                       
CONECT   17   15   18   19    9                                             
CONECT   18   17   38   39   40                                             
CONECT   19   17   41   42   43                                             
CONECT   20    1                                                            
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    3                                                            
CONECT   24    6                                                            
CONECT   25    7                                                            
CONECT   26    8                                                            
CONECT   27    9                                                            
CONECT   28   10                                                            
CONECT   29   11                                                            
CONECT   30   11                                                            
CONECT   31   11                                                            
CONECT   32   12                                                            
CONECT   33   12                                                            
CONECT   34   13                                                            
CONECT   35   14                                                            
CONECT   36   15                                                            
CONECT   37   16                                                            
CONECT   38   18                                                            
CONECT   39   18                                                            
CONECT   40   18                                                            
CONECT   41   19                                                            
CONECT   42   19                                                            
CONECT   43   19                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   86    0
END

RDKit          3D

43 43  0  0  0  0  0  0  0  0999 V2000
    3.3457   -0.1482    2.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6516    0.4597    1.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8209    0.6046    0.7585 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6960    1.1478   -0.6637 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6744    1.3425   -1.2651 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9077    1.4170   -1.2239 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3950    0.3041    1.6127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3720    0.0782    0.8384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0225   -0.1512    0.6653 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4125   -1.5735    0.3042 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9205   -2.5719    1.2908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0198   -1.9590   -1.0826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7539   -1.0281   -2.0306 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1219   -1.2683   -2.0488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3820    0.3663   -1.7586 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1280    1.2145   -2.5908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5687    0.8478   -0.3302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8950    2.1919   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0505    1.0816   -0.0222 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4267    0.8603    3.1528 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4014   -0.6282    3.0456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1050   -0.7483    2.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8114    0.4629    1.0776 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7641    1.0944   -0.8138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0935    0.3872    2.6676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8794   -0.0056   -0.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6339    0.0518    1.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5433   -1.5784    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0515   -2.3229    1.7636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7165   -2.8303    2.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7513   -3.5462    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3338   -3.0198   -1.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -1.8144   -1.2783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3734   -1.2915   -3.0667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5010   -1.1828   -2.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3057    0.5219   -2.0066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5368    1.9819   -2.8848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5316    2.8782   -0.8976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8847    2.6485    0.7484 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0973    2.1956   -0.7520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3703    2.0851   -0.3910 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6922    0.2661   -0.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0985    1.1789    1.1122 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  2  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  6
 17 19  1  0
 17  9  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  1
 10 28  1  6
 11 29  1  0
 11 30  1  0
 11 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  6
 14 35  1  0
 15 36  1  6
 16 37  1  0
 18 38  1  0
 18 39  1  0
 18 40  1  0
 19 41  1  0
 19 42  1  0
 19 43  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Pyrenophate	Generator
Pyrenophic acid	Generator
(2Z,4E)-5-((7S,9S,10R,12R)-3,4-Dihydroxy-2,2,6-trimethylcyclohexyl))-3-methylpenta-2,4-dienoic acid	MeSH
(2Z)-5-[(1S,3S,4R,6R)-3,4-Dihydroxy-2,2,6-trimethylcyclohexyl]-3-methylpenta-2,4-dienoate	Generator

Chemical Formula

C₁₅H₂₄O₄

Average Mass

268.3530 Da

Monoisotopic Mass

268.16746 Da

IUPAC Name

(4E)-5-[(1S,3S,4R,6R)-3,4-dihydroxy-2,2,6-trimethylcyclohexyl]-3-methylpenta-2,4-dienoic acid

Traditional Name

(4E)-5-[(1S,3S,4R,6R)-3,4-dihydroxy-2,2,6-trimethylcyclohexyl]-3-methylpenta-2,4-dienoic acid

CAS Registry Number

Not Available

SMILES

C[C@@H]1C[C@@H](O)[C@@H](O)C(C)(C)[C@@H]1\C=C\C(\C)=C/C(O)=O

InChI Identifier

InChI=1S/C15H24O4/c1-9(7-13(17)18)5-6-11-10(2)8-12(16)14(19)15(11,3)4/h5-7,10-12,14,16,19H,8H2,1-4H3,(H,17,18)/b6-5+,9-7-/t10-,11-,12-,14-/m1/s1

InChI Key

MSGLVYRESMKEPC-ZCJFAIRWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pyrenophora	NPAtlas	24641210
Pyrenophora seminiperda	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.75	ALOGPS
logP	1.86	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	4.82	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	75.17 m³·mol⁻¹	ChemAxon
Polarizability	29.93 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA010063

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

32033794

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139585877

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Masi M, Meyer S, Cimmino A, Andolfi A, Evidente A: Pyrenophoric acid, a phytotoxic sesquiterpenoid penta-2,4-dienoic acid produced by a potential mycoherbicide, Pyrenophora semeniperda. J Nat Prod. 2014 Apr 25;77(4):925-30. doi: 10.1021/np4009915. Epub 2014 Mar 18. [PubMed:24641210 ]

Showing NP-Card for Pyrenophoric acid (NP0012635)

MOL for NP0012635 (Pyrenophoric acid)

3D MOL for NP0012635 (Pyrenophoric acid)

3D SDF for NP0012635 (Pyrenophoric acid)

3D-SDF for NP0012635 (Pyrenophoric acid)

PDB for NP0012635 (Pyrenophoric acid)

3D PDB for NP0012635 (Pyrenophoric acid)

SMILES for NP0012635 (Pyrenophoric acid)

INCHI for NP0012635 (Pyrenophoric acid)

Structure for NP0012635 (Pyrenophoric acid)

3D Structure for NP0012635 (Pyrenophoric acid)