NP-MRD: Showing NP-Card for Cacibiocin B (NP0012546)

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Record Information

Version

2.0

Created at

2021-01-05 21:54:22 UTC

Updated at

2021-07-15 17:12:04 UTC

NP-MRD ID

NP0012546

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cacibiocin B

Provided By

NPAtlas

Description

Cacibiocin B is found in Catenulispora acidiphila and Catenulispora acidiphila DSM 44928. Cacibiocin B was first documented in 2014 (PMID: 24554531). Based on a literature review very few articles have been published on CHEBI:156552.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117093D          

 34 36  0  0  0  0            999 V2000
   -6.6043   -1.8318   -1.0484 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4477   -1.0437   -0.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5311   -0.6981    0.7178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1353   -0.4923    0.2496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8377    0.3765    1.2932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4881    0.6474    1.2319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9754   -0.0511    0.1615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5822   -0.0417   -0.2547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2419   -0.7352   -1.2656 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5975    0.7178    0.4349 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7600    0.7468    0.0552 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7032   -0.1622    0.5598 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2773   -1.0999    1.4468 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0141   -0.0789    0.1473 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9687   -0.9770    0.6398 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2876   -0.8738    0.2088 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4841   -2.0056    0.8311 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    5.6824    0.0912   -0.6927 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9813    0.2352   -1.1522 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7267    0.9633   -1.1635 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1791    2.2089   -2.3121 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    3.3996    0.8861   -0.7518 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4963    1.7204   -1.2050 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2396    1.6777   -0.8403 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4642    2.5339   -1.3451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9670   -0.7221   -0.4101 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2222   -0.0299    0.3610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5415    0.7654    2.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6975   -1.7452    1.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6986   -0.3893   -0.8239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8670   -1.3433   -1.2523 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

 34 36  0  0  0  0  0  0  0  0999 V2000
   -6.6043   -1.8318   -1.0484 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4477   -1.0437   -0.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.9687   -0.9770    0.6398 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.6824    0.0912   -0.6927 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9813    0.2352   -1.1522 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3996    0.8861   -0.7518 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4963    1.7204   -1.2050 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2396    1.6777   -0.8403 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  2  0
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M  END


  Mrv1652306242117093D          

 34 36  0  0  0  0            999 V2000
   -6.6043   -1.8318   -1.0484 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4477   -1.0437   -0.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5311   -0.6981    0.7178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1353   -0.4923    0.2496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8377    0.3765    1.2932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4881    0.6474    1.2319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9754   -0.0511    0.1615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5822   -0.0417   -0.2547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2419   -0.7352   -1.2656 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5975    0.7178    0.4349 N   0  0  0  0  0  0  0  0  0  0  0  0
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    6.9813    0.2352   -1.1522 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8086   -1.8087    1.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6975   -1.7452    1.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
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 26 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0012546

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C1=C([H])C([H])=C(N1[H])C(=O)N([H])C1=C(O[H])C2=C([H])C(Cl)=C(O[H])C(Cl)=C2OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H8Cl2N2O7/c16-5-3-4-10(20)9(15(25)26-12(4)8(17)11(5)21)19-13(22)6-1-2-7(18-6)14(23)24/h1-3,18,20-21H,(H,19,22)(H,23,24)

> <INCHI_KEY>
XKCFYLTVOFQSHE-UHFFFAOYSA-N

> <FORMULA>
C15H8Cl2N2O7

> <MOLECULAR_WEIGHT>
399.14

> <EXACT_MASS>
397.970856

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
35.76246249691313

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(6,8-dichloro-4,7-dihydroxy-2-oxo-2H-chromen-3-yl)carbamoyl]-1H-pyrrole-2-carboxylic acid

> <ALOGPS_LOGP>
2.24

> <JCHEM_LOGP>
1.3008217976666665

> <ALOGPS_LOGS>
-4.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
4.957115462722058

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.264791489523103

> <JCHEM_PKA_STRONGEST_BASIC>
-7.30783281686149

> <JCHEM_POLAR_SURFACE_AREA>
148.95

> <JCHEM_REFRACTIVITY>
90.54059999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.29e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[(6,8-dichloro-4,7-dihydroxy-2-oxochromen-3-yl)carbamoyl]-1H-pyrrole-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 34 36  0  0  0  0  0  0  0  0999 V2000
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    5.1791    2.2089   -2.3121 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    3.3996    0.8861   -0.7518 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4642    2.5339   -1.3451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9670   -0.7221   -0.4101 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2222   -0.0299    0.3610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5415    0.7654    2.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9257    1.2841    1.8907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9041    1.2752    1.2576 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8086   -1.8087    1.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6975   -1.7452    1.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6986   -0.3893   -0.8239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8670   -1.3433   -1.2523 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  2  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 20 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
  7 26  1  0
 26  4  1  0
 24 11  1  0
 22 14  1  0
  3 27  1  0
  5 28  1  0
  6 29  1  0
 10 30  1  0
 13 31  1  0
 15 32  1  0
 19 33  1  0
 26 34  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0      -6.604  -1.832  -1.048  0.00  0.00           O+0
HETATM    2  C   UNK     0      -6.448  -1.044  -0.067  0.00  0.00           C+0
HETATM    3  O   UNK     0      -7.531  -0.698   0.718  0.00  0.00           O+0
HETATM    4  C   UNK     0      -5.135  -0.492   0.250  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.838   0.377   1.293  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.488   0.647   1.232  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.975  -0.051   0.162  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.582  -0.042  -0.255  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.242  -0.735  -1.266  0.00  0.00           O+0
HETATM   10  N   UNK     0      -0.598   0.718   0.435  0.00  0.00           N+0
HETATM   11  C   UNK     0       0.760   0.747   0.055  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.703  -0.162   0.560  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.277  -1.100   1.447  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.014  -0.079   0.147  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.969  -0.977   0.640  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.288  -0.874   0.209  0.00  0.00           C+0
HETATM   17 Cl   UNK     0       6.484  -2.006   0.831  0.00  0.00          Cl+0
HETATM   18  C   UNK     0       5.682   0.091  -0.693  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.981   0.235  -1.152  0.00  0.00           O+0
HETATM   20  C   UNK     0       4.727   0.963  -1.163  0.00  0.00           C+0
HETATM   21 Cl   UNK     0       5.179   2.209  -2.312  0.00  0.00          Cl+0
HETATM   22  C   UNK     0       3.400   0.886  -0.752  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.496   1.720  -1.205  0.00  0.00           O+0
HETATM   24  C   UNK     0       1.240   1.678  -0.840  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.464   2.534  -1.345  0.00  0.00           O+0
HETATM   26  N   UNK     0      -3.967  -0.722  -0.410  0.00  0.00           N+0
HETATM   27  H   UNK     0      -8.222  -0.030   0.361  0.00  0.00           H+0
HETATM   28  H   UNK     0      -5.542   0.765   2.018  0.00  0.00           H+0
HETATM   29  H   UNK     0      -2.926   1.284   1.891  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.904   1.275   1.258  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.809  -1.809   1.894  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.697  -1.745   1.346  0.00  0.00           H+0
HETATM   33  H   UNK     0       7.699  -0.389  -0.824  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.867  -1.343  -1.252  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2   27                                                       
CONECT    4    2    5   26                                                  
CONECT    5    4    6   28                                                  
CONECT    6    5    7   29                                                  
CONECT    7    6    8   26                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   30                                                  
CONECT   11   10   12   24                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12   31                                                       
CONECT   14   12   15   22                                                  
CONECT   15   14   16   32                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18   33                                                       
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   14                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   11                                                  
CONECT   25   24                                                            
CONECT   26    7    4   34                                                  
CONECT   27    3                                                            
CONECT   28    5                                                            
CONECT   29    6                                                            
CONECT   30   10                                                            
CONECT   31   13                                                            
CONECT   32   15                                                            
CONECT   33   19                                                            
CONECT   34   26                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   72    0
END

RDKit          3D

34 36  0  0  0  0  0  0  0  0999 V2000
   -6.6043   -1.8318   -1.0484 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4477   -1.0437   -0.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5311   -0.6981    0.7178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1353   -0.4923    0.2496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8377    0.3765    1.2932 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4881    0.6474    1.2319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9754   -0.0511    0.1615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5822   -0.0417   -0.2547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2419   -0.7352   -1.2656 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5975    0.7178    0.4349 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7600    0.7468    0.0552 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7032   -0.1622    0.5598 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2773   -1.0999    1.4468 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0141   -0.0789    0.1473 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9687   -0.9770    0.6398 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2876   -0.8738    0.2088 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4841   -2.0056    0.8311 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    5.6824    0.0912   -0.6927 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9813    0.2352   -1.1522 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7267    0.9633   -1.1635 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1791    2.2089   -2.3121 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    3.3996    0.8861   -0.7518 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4963    1.7204   -1.2050 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2396    1.6777   -0.8403 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4642    2.5339   -1.3451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9670   -0.7221   -0.4101 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2222   -0.0299    0.3610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5415    0.7654    2.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9257    1.2841    1.8907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9041    1.2752    1.2576 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8086   -1.8087    1.8937 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6975   -1.7452    1.3461 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6986   -0.3893   -0.8239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8670   -1.3433   -1.2523 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  2  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 20 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
  7 26  1  0
 26  4  1  0
 24 11  1  0
 22 14  1  0
  3 27  1  0
  5 28  1  0
  6 29  1  0
 10 30  1  0
 13 31  1  0
 15 32  1  0
 19 33  1  0
 26 34  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
5-[(6,8-Dichloro-4,7-dihydroxy-2-oxo-2H-chromen-3-yl)carbamoyl]-1H-pyrrole-2-carboxylate	Generator

Chemical Formula

C₁₅H₈Cl₂N₂O₇

Average Mass

399.1400 Da

Monoisotopic Mass

397.97086 Da

IUPAC Name

5-[(6,8-dichloro-4,7-dihydroxy-2-oxo-2H-chromen-3-yl)carbamoyl]-1H-pyrrole-2-carboxylic acid

Traditional Name

5-[(6,8-dichloro-4,7-dihydroxy-2-oxochromen-3-yl)carbamoyl]-1H-pyrrole-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

OC(=O)C1=CC=C(N1)C(=O)NC1=C(O)C2=CC(Cl)=C(O)C(Cl)=C2OC1=O

InChI Identifier

InChI=1S/C15H8Cl2N2O7/c16-5-3-4-10(20)9(15(25)26-12(4)8(17)11(5)21)19-13(22)6-1-2-7(18-6)14(23)24/h1-3,18,20-21H,(H,19,22)(H,23,24)

InChI Key

XKCFYLTVOFQSHE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Catenulispora acidiphila	LOTUS Database	35616633
Catenulispora acidiphila DSM 44928	NPAtlas	24554531

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.24	ALOGPS
logP	1.3	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	4.26	ChemAxon
pKa (Strongest Basic)	-7.3	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	148.95 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	90.54 m³·mol⁻¹	ChemAxon
Polarizability	35.76 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA003913

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78435429

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139584183

PDB ID

Not Available

ChEBI ID

156552

Good Scents ID

Not Available

References

General References

Zettler J, Xia H, Burkard N, Kulik A, Grond S, Heide L, Apel AK: New aminocoumarins from the rare actinomycete Catenulispora acidiphila DSM 44928: identification, structure elucidation, and heterologous production. Chembiochem. 2014 Mar 3;15(4):612-21. doi: 10.1002/cbic.201300712. Epub 2014 Feb 19. [PubMed:24554531 ]

Showing NP-Card for Cacibiocin B (NP0012546)

MOL for NP0012546 (Cacibiocin B)

3D MOL for NP0012546 (Cacibiocin B)

3D SDF for NP0012546 (Cacibiocin B)

3D-SDF for NP0012546 (Cacibiocin B)

PDB for NP0012546 (Cacibiocin B)

3D PDB for NP0012546 (Cacibiocin B)

SMILES for NP0012546 (Cacibiocin B)

INCHI for NP0012546 (Cacibiocin B)

Structure for NP0012546 (Cacibiocin B)

3D Structure for NP0012546 (Cacibiocin B)