NP-MRD: Showing NP-Card for Sorbicatechol B (NP0012483)

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Record Information

Version

2.0

Created at

2021-01-05 21:51:49 UTC

Updated at

2021-07-15 17:11:53 UTC

NP-MRD ID

NP0012483

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Sorbicatechol B

Provided By

NPAtlas

Description

Sorbicatechol B is found in Penicillium and Penicillium chrysogenum. Based on a literature review very few articles have been published on (1R,3S,4S,5Z,7S)-3-hydroxy-7-(4-hydroxy-3-methoxyphenyl)-5-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,3-dimethylbicyclo[2.2.2]Octane-2,6-dione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117083D          

 55 57  0  0  0  0            999 V2000
    7.6148    0.8129    3.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7811    0.1649    2.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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 18  8  1  0  0  0  0
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M  END

     RDKit          3D

 55 57  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242117083D          

 55 57  0  0  0  0            999 V2000
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   -2.6578   -1.5247   -2.4304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0943   -2.4814   -2.6320 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2542    3.2571   -0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3905    2.9505   -2.3239 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8181    1.9073   -1.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1483    3.2478   -0.4965 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1161    1.1572    0.9992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2284   -0.6018    1.7965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2484    0.6988    1.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7012   -2.0936    0.0894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5182   -3.4107    0.6043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9439   -3.6318    0.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4053   -1.0218    0.6223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6432    1.7825   -1.2659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0033    2.7144   -0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4673    2.2553    0.4334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1208    0.7675   -0.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  1  0  0  0
 15 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 26 29  2  0  0  0  0
 18  8  1  0  0  0  0
 29 21  1  0  0  0  0
 20 11  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
  1 32  1  0  0  0  0
  2 33  1  0  0  0  0
  3 34  1  0  0  0  0
  4 35  1  0  0  0  0
  5 36  1  0  0  0  0
  7 37  1  0  0  0  0
 12 38  1  0  0  0  0
 12 39  1  0  0  0  0
 12 40  1  0  0  0  0
 16 41  1  0  0  0  0
 16 42  1  0  0  0  0
 16 43  1  0  0  0  0
 17 44  1  0  0  0  0
 18 45  1  1  0  0  0
 19 46  1  0  0  0  0
 19 47  1  0  0  0  0
 20 48  1  1  0  0  0
 22 49  1  0  0  0  0
 23 50  1  0  0  0  0
 25 51  1  0  0  0  0
 28 52  1  0  0  0  0
 28 53  1  0  0  0  0
 28 54  1  0  0  0  0
 29 55  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0012483

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O\C(\C(\[H])=C(/[H])\C(\[H])=C(/[H])C([H])([H])[H])=C1/C(=O)[C@@]2(C(=O)[C@](O[H])(C([H])([H])[H])[C@@]1([H])C([H])([H])[C@@]2([H])C1=C([H])C([H])=C(O[H])C(OC([H])([H])[H])=C1[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H26O6/c1-5-6-7-8-17(25)19-15-12-14(13-9-10-16(24)18(11-13)29-4)22(2,20(19)26)21(27)23(15,3)28/h5-11,14-15,24-25,28H,12H2,1-4H3/b6-5+,8-7+,19-17-/t14-,15-,22+,23-/m0/s1

> <INCHI_KEY>
GSRGQKYQEBYBAG-NAUUYRRVSA-N

> <FORMULA>
C23H26O6

> <MOLECULAR_WEIGHT>
398.455

> <EXACT_MASS>
398.172938557

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
43.25060097250324

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3S,4S,5Z,7S)-3-hydroxy-7-(4-hydroxy-3-methoxyphenyl)-5-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,3-dimethylbicyclo[2.2.2]octane-2,6-dione

> <ALOGPS_LOGP>
3.30

> <JCHEM_LOGP>
3.5639719459999997

> <ALOGPS_LOGS>
-3.85

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.223254194827815

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.073689799711612

> <JCHEM_PKA_STRONGEST_BASIC>
-3.7062890050617243

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
112.5596

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.61e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S,4S,5Z,7S)-3-hydroxy-7-(4-hydroxy-3-methoxyphenyl)-5-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,3-dimethylbicyclo[2.2.2]octane-2,6-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 55 57  0  0  0  0  0  0  0  0999 V2000
    7.6148    0.8129    3.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7811    0.1649    2.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5033    0.4606    1.8968 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6955   -0.1884    0.8793 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3971    0.0810    0.6746 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6486   -0.5991   -0.3541 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2648   -1.5703   -1.1765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4076   -0.3517   -0.5607 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6145   -1.0443   -1.6203 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1041   -1.7879   -2.4692 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8514   -0.7086   -1.5049 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5592   -1.4776   -2.5517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8971    0.7667   -1.6719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5879    1.2515   -2.5303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0820    1.6014   -0.7668 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9203    2.4613   -1.4809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9349    2.4085   -0.0306 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6228    0.6224    0.1994 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5699   -0.1228    0.8377 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1950   -1.1171   -0.0890 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6445   -1.3026    0.1255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1492   -2.5309    0.4729 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5043   -2.6634    0.6641 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3752   -1.6096    0.5202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7412   -1.7511    0.7147 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8541   -0.3692    0.1680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7527    0.6803    0.0284 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2281    1.9442   -0.3296 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4951   -0.2337   -0.0243 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3281    1.8803    3.2494 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5583    0.2522    4.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6753    0.8144    2.8017 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2034   -0.5850    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1042    1.2180    2.5692 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1327   -0.9297    0.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9763    0.8237    1.3223 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8493   -2.2946   -0.8078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3791   -0.9793   -3.5279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6578   -1.5247   -2.4304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0943   -2.4814   -2.6320 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2542    3.2571   -0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3905    2.9505   -2.3239 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8181    1.9073   -1.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1483    3.2478   -0.4965 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1161    1.1572    0.9992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2284   -0.6018    1.7965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2484    0.6988    1.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7012   -2.0936    0.0894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5182   -3.4107    0.6043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9439   -3.6318    0.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4053   -1.0218    0.6223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6432    1.7825   -1.2659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0033    2.7144   -0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4673    2.2553    0.4334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1208    0.7675   -0.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  6
 11 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 15 17  1  1
 15 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 26 29  2  0
 18  8  1  0
 29 21  1  0
 20 11  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  2 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  7 37  1  0
 12 38  1  0
 12 39  1  0
 12 40  1  0
 16 41  1  0
 16 42  1  0
 16 43  1  0
 17 44  1  0
 18 45  1  1
 19 46  1  0
 19 47  1  0
 20 48  1  1
 22 49  1  0
 23 50  1  0
 25 51  1  0
 28 52  1  0
 28 53  1  0
 28 54  1  0
 29 55  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       7.615   0.813   3.091  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.781   0.165   2.065  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.503   0.461   1.897  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.696  -0.188   0.879  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.397   0.081   0.675  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.649  -0.599  -0.354  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.265  -1.570  -1.177  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.408  -0.352  -0.561  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.615  -1.044  -1.620  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.104  -1.788  -2.469  0.00  0.00           O+0
HETATM   11  C   UNK     0      -0.851  -0.709  -1.505  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.559  -1.478  -2.552  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.897   0.767  -1.672  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.588   1.252  -2.530  0.00  0.00           O+0
HETATM   15  C   UNK     0      -0.082   1.601  -0.767  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.920   2.461  -1.481  0.00  0.00           C+0
HETATM   17  O   UNK     0      -0.935   2.409  -0.031  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.623   0.622   0.199  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.570  -0.123   0.838  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.195  -1.117  -0.089  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.644  -1.303   0.126  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.149  -2.531   0.473  0.00  0.00           C+0
HETATM   23  C   UNK     0      -4.504  -2.663   0.664  0.00  0.00           C+0
HETATM   24  C   UNK     0      -5.375  -1.610   0.520  0.00  0.00           C+0
HETATM   25  O   UNK     0      -6.741  -1.751   0.715  0.00  0.00           O+0
HETATM   26  C   UNK     0      -4.854  -0.369   0.168  0.00  0.00           C+0
HETATM   27  O   UNK     0      -5.753   0.680   0.028  0.00  0.00           O+0
HETATM   28  C   UNK     0      -5.228   1.944  -0.330  0.00  0.00           C+0
HETATM   29  C   UNK     0      -3.495  -0.234  -0.024  0.00  0.00           C+0
HETATM   30  H   UNK     0       7.328   1.880   3.249  0.00  0.00           H+0
HETATM   31  H   UNK     0       7.558   0.252   4.065  0.00  0.00           H+0
HETATM   32  H   UNK     0       8.675   0.814   2.802  0.00  0.00           H+0
HETATM   33  H   UNK     0       7.203  -0.585   1.410  0.00  0.00           H+0
HETATM   34  H   UNK     0       5.104   1.218   2.569  0.00  0.00           H+0
HETATM   35  H   UNK     0       5.133  -0.930   0.239  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.976   0.824   1.322  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.849  -2.295  -0.808  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.379  -0.979  -3.528  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.658  -1.525  -2.430  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.094  -2.481  -2.632  0.00  0.00           H+0
HETATM   41  H   UNK     0       1.254   3.257  -0.788  0.00  0.00           H+0
HETATM   42  H   UNK     0       0.391   2.950  -2.324  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.818   1.907  -1.821  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.148   3.248  -0.497  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.116   1.157   0.999  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.228  -0.602   1.797  0.00  0.00           H+0
HETATM   47  H   UNK     0      -1.248   0.699   1.148  0.00  0.00           H+0
HETATM   48  H   UNK     0      -0.701  -2.094   0.089  0.00  0.00           H+0
HETATM   49  H   UNK     0      -2.518  -3.411   0.604  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.944  -3.632   0.943  0.00  0.00           H+0
HETATM   51  H   UNK     0      -7.405  -1.022   0.622  0.00  0.00           H+0
HETATM   52  H   UNK     0      -4.643   1.783  -1.266  0.00  0.00           H+0
HETATM   53  H   UNK     0      -6.003   2.714  -0.443  0.00  0.00           H+0
HETATM   54  H   UNK     0      -4.467   2.255   0.433  0.00  0.00           H+0
HETATM   55  H   UNK     0      -3.121   0.768  -0.303  0.00  0.00           H+0
CONECT    1    2   30   31   32                                             
CONECT    2    1    3   33                                                  
CONECT    3    2    4   34                                                  
CONECT    4    3    5   35                                                  
CONECT    5    4    6   36                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6   37                                                       
CONECT    8    6    9   18                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13   20                                             
CONECT   12   11   38   39   40                                             
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17   18                                             
CONECT   16   15   41   42   43                                             
CONECT   17   15   44                                                       
CONECT   18   15   19    8   45                                             
CONECT   19   18   20   46   47                                             
CONECT   20   19   21   11   48                                             
CONECT   21   20   22   29                                                  
CONECT   22   21   23   49                                                  
CONECT   23   22   24   50                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24   51                                                       
CONECT   26   24   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27   52   53   54                                             
CONECT   29   26   21   55                                                  
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    2                                                            
CONECT   34    3                                                            
CONECT   35    4                                                            
CONECT   36    5                                                            
CONECT   37    7                                                            
CONECT   38   12                                                            
CONECT   39   12                                                            
CONECT   40   12                                                            
CONECT   41   16                                                            
CONECT   42   16                                                            
CONECT   43   16                                                            
CONECT   44   17                                                            
CONECT   45   18                                                            
CONECT   46   19                                                            
CONECT   47   19                                                            
CONECT   48   20                                                            
CONECT   49   22                                                            
CONECT   50   23                                                            
CONECT   51   25                                                            
CONECT   52   28                                                            
CONECT   53   28                                                            
CONECT   54   28                                                            
CONECT   55   29                                                            
MASTER        0    0    0    0    0    0    0    0   55    0  114    0
END

RDKit          3D

55 57  0  0  0  0  0  0  0  0999 V2000
    7.6148    0.8129    3.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7811    0.1649    2.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5033    0.4606    1.8968 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6955   -0.1884    0.8793 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3971    0.0810    0.6746 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6486   -0.5991   -0.3541 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2648   -1.5703   -1.1765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4076   -0.3517   -0.5607 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6145   -1.0443   -1.6203 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1041   -1.7879   -2.4692 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8514   -0.7086   -1.5049 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5592   -1.4776   -2.5517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8971    0.7667   -1.6719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5879    1.2515   -2.5303 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0820    1.6014   -0.7668 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9203    2.4613   -1.4809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9349    2.4085   -0.0306 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6228    0.6224    0.1994 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5699   -0.1228    0.8377 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1950   -1.1171   -0.0890 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6445   -1.3026    0.1255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1492   -2.5309    0.4729 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5043   -2.6634    0.6641 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3752   -1.6096    0.5202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7412   -1.7511    0.7147 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8541   -0.3692    0.1680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7527    0.6803    0.0284 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2281    1.9442   -0.3296 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4951   -0.2337   -0.0243 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3281    1.8803    3.2494 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5583    0.2522    4.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6753    0.8144    2.8017 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2034   -0.5850    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1042    1.2180    2.5692 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1327   -0.9297    0.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9763    0.8237    1.3223 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8493   -2.2946   -0.8078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3791   -0.9793   -3.5279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6578   -1.5247   -2.4304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0943   -2.4814   -2.6320 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2542    3.2571   -0.7884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3905    2.9505   -2.3239 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8181    1.9073   -1.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1483    3.2478   -0.4965 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1161    1.1572    0.9992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2284   -0.6018    1.7965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2484    0.6988    1.1481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7012   -2.0936    0.0894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5182   -3.4107    0.6043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9439   -3.6318    0.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4053   -1.0218    0.6223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6432    1.7825   -1.2659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0033    2.7144   -0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4673    2.2553    0.4334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1208    0.7675   -0.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  6
 11 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 15 17  1  1
 15 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 26 29  2  0
 18  8  1  0
 29 21  1  0
 20 11  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  2 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  7 37  1  0
 12 38  1  0
 12 39  1  0
 12 40  1  0
 16 41  1  0
 16 42  1  0
 16 43  1  0
 17 44  1  0
 18 45  1  1
 19 46  1  0
 19 47  1  0
 20 48  1  1
 22 49  1  0
 23 50  1  0
 25 51  1  0
 28 52  1  0
 28 53  1  0
 28 54  1  0
 29 55  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₃H₂₆O₆

Average Mass

398.4550 Da

Monoisotopic Mass

398.17294 Da

IUPAC Name

(1R,3S,4S,5Z,7S)-3-hydroxy-7-(4-hydroxy-3-methoxyphenyl)-5-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,3-dimethylbicyclo[2.2.2]octane-2,6-dione

Traditional Name

(1R,3S,4S,5Z,7S)-3-hydroxy-7-(4-hydroxy-3-methoxyphenyl)-5-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,3-dimethylbicyclo[2.2.2]octane-2,6-dione

CAS Registry Number

Not Available

SMILES

COC1=C(O)C=CC(=C1)[C@@H]1C[C@H]2\C(=C(\O)/C=C/C=C/C)C(=O)[C@]1(C)C(=O)[C@@]2(C)O

InChI Identifier

InChI=1S/C23H26O6/c1-5-6-7-8-17(25)19-15-12-14(13-9-10-16(24)18(11-13)29-4)22(2,20(19)26)21(27)23(15,3)28/h5-11,14-15,24-25,28H,12H2,1-4H3/b6-5+,8-7+,19-17-/t14-,15-,22+,23-/m0/s1

InChI Key

GSRGQKYQEBYBAG-NAUUYRRVSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Chloroform-d, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium	NPAtlas	24495078
Penicillium chrysogenum	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.3	ALOGPS
logP	3.56	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	9.07	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	112.56 m³·mol⁻¹	ChemAxon
Polarizability	43.25 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA001454

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

31130425

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

76328404

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Sorbicatechol B (NP0012483)

MOL for NP0012483 (Sorbicatechol B)

3D MOL for NP0012483 (Sorbicatechol B)

3D SDF for NP0012483 (Sorbicatechol B)

3D-SDF for NP0012483 (Sorbicatechol B)

PDB for NP0012483 (Sorbicatechol B)

3D PDB for NP0012483 (Sorbicatechol B)

SMILES for NP0012483 (Sorbicatechol B)

INCHI for NP0012483 (Sorbicatechol B)

Structure for NP0012483 (Sorbicatechol B)

3D Structure for NP0012483 (Sorbicatechol B)