NP-MRD: Showing NP-Card for Farneside B (NP0012074)

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Record Information

Version

1.0

Created at

2021-01-05 21:33:50 UTC

Updated at

2021-07-15 17:10:45 UTC

NP-MRD ID

NP0012074

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Farneside B

Provided By

NPAtlas

Description

Farneside B is found in Streptomyces. It was first documented in 2013 (PMID: 23987585). Based on a literature review very few articles have been published on 1-[(2R,3R,4S,5R)-5-({[(2E)-6,7-dihydroxy-3,7,11-trimethyldodeca-2,10-dien-1-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-hydroxy-1,2,5,6-tetrahydropyrimidin-2-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117013D          

 74 75  0  0  0  0            999 V2000
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M  END

     RDKit          3D

 74 75  0  0  0  0  0  0  0  0999 V2000
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  1 35  1  0
  1 36  1  0
  1 37  1  0
  3 38  1  0
  3 39  1  0
  3 40  1  0
  4 41  1  0
  5 42  1  0
  5 43  1  0
  6 44  1  0
  6 45  1  0
  8 46  1  0
  8 47  1  0
  8 48  1  0
  9 49  1  0
 10 50  1  6
 11 51  1  0
 12 52  1  0
 12 53  1  0
 13 54  1  0
 13 55  1  0
 15 56  1  0
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 15 58  1  0
 16 59  1  0
 17 60  1  0
 17 61  1  0
 19 62  1  0
 19 63  1  0
 20 64  1  6
 22 65  1  6
 24 66  1  0
 24 67  1  0
 25 68  1  0
 25 69  1  0
 28 70  1  0
 31 71  1  1
 32 72  1  0
 33 73  1  1
 34 74  1  0
M  END


  Mrv1652306242117013D          

 74 75  0  0  0  0            999 V2000
   -7.0105   -1.6662   -1.6837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8142   -0.8158   -1.6716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3488   -0.0801   -2.8631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0950   -0.6922   -0.5191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5406   -1.4208    0.6934 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8626   -0.6458    1.8799 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8785    0.0765    2.7210 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8746   -0.8145    3.3777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7317    0.6007    3.7725 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2543    1.3177    2.1526 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8952    2.1436    3.3086 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8424    1.0378    1.6314 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.8821    2.0648    0.5135 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6732    1.0580   -0.5527 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0942    1.5652   -0.8416 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2801    0.5185   -1.9420 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5989    0.4517   -2.2918 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1076   -0.7761   -1.9701 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4889   -0.7001   -1.5412 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.8604    0.1581   -0.4328 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.7136   -0.6617    0.5079 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.7995   -1.3831   -0.1977 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8657   -1.5886    0.4334 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6653   -1.8387   -1.5449 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.4676   -1.4774   -2.2225 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2297   -1.8194   -3.4173 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2110   -1.3423   -0.8624 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2314   -2.7191   -0.8315 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8631   -0.8003   -1.3605 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4421   -1.6194   -2.4226 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.2437    2.4317    1.3796 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9571    0.4646    0.1259 H   0  0  0  0  0  0  0  0  0  0  0  0
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    8.1719    0.0601    1.2257 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3939   -2.4093   -2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  3  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  1  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
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 13 14  1  0  0  0  0
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 29 30  2  0  0  0  0
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 29 23  1  0  0  0  0
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  3 38  1  0  0  0  0
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 31 71  1  1  0  0  0
 32 72  1  0  0  0  0
 33 73  1  1  0  0  0
 34 74  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0012074

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]([H])(C([H])([H])C([H])([H])C(=C(/[H])C([H])([H])OC([H])([H])[C@@]1([H])O[C@@]([H])(N2C(=O)N([H])C(=O)C([H])([H])C2([H])[H])[C@]([H])(O[H])[C@]1([H])O[H])\C([H])([H])[H])[C@](O[H])(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C24H40N2O8/c1-15(2)6-5-11-24(4,32)18(27)8-7-16(3)10-13-33-14-17-20(29)21(30)22(34-17)26-12-9-19(28)25-23(26)31/h6,10,17-18,20-22,27,29-30,32H,5,7-9,11-14H2,1-4H3,(H,25,28,31)/b16-10+/t17-,18+,20-,21-,22-,24+/m1/s1

> <INCHI_KEY>
AHUPOCLKEKMZQR-AOUILNQWSA-N

> <FORMULA>
C24H40N2O8

> <MOLECULAR_WEIGHT>
484.59

> <EXACT_MASS>
484.278466256

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
52.65574872729286

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-[(2R,3R,4S,5R)-5-({[(2E,6S,7S)-6,7-dihydroxy-3,7,11-trimethyldodeca-2,10-dien-1-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-1,3-diazinane-2,4-dione

> <ALOGPS_LOGP>
1.06

> <JCHEM_LOGP>
0.4881571896666658

> <ALOGPS_LOGS>
-2.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.649898477318885

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.582365706659967

> <JCHEM_PKA_STRONGEST_BASIC>
-3.211566207469162

> <JCHEM_POLAR_SURFACE_AREA>
148.79

> <JCHEM_REFRACTIVITY>
126.08699999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.65e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-[(2R,3R,4S,5R)-5-({[(2E,6S,7S)-6,7-dihydroxy-3,7,11-trimethyldodeca-2,10-dien-1-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-1,3-diazinane-2,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 74 75  0  0  0  0  0  0  0  0999 V2000
   -7.0105   -1.6662   -1.6837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8142   -0.8158   -1.6716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3488   -0.0801   -2.8631 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.8626   -0.6458    1.8799 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2543    1.3177    2.1526 C   0  0  1  0  0  0  0  0  0  0  0  0
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    3.2801    0.5185   -1.9420 C   0  0  1  0  0  0  0  0  0  0  0  0
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    5.1076   -0.7761   -1.9701 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4889   -0.7001   -1.5412 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.8604    0.1581   -0.4328 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4421   -1.6194   -2.4226 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8254    0.2284    0.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2847    3.0876    1.8023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0450    0.2078   -0.2165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3194    1.5227   -1.5002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6576    0.6155   -0.8041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0095    3.4567    1.7394 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2437    2.4317    1.3796 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8758    3.5638    0.0720 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4384    2.5584   -1.1609 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6852    1.2602    0.0612 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6541    0.8260   -2.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9986   -1.4711   -2.8211 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9571    0.4646    0.1259 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4182    1.0617   -0.8010 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0216   -1.3562    1.0439 H   0  0  0  0  0  0  0  0  0  0  0  0
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    9.3939   -2.4093   -2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3908   -0.8619    0.1042 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4581   -3.0264    0.0983 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1348   -0.7375   -0.5537 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8001   -1.2940   -3.2939 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  1
  7 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
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 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
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 26 27  2  0
 26 28  1  0
 28 29  1  0
 29 30  2  0
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 31 32  1  0
 31 33  1  0
 33 34  1  0
 33 20  1  0
 29 23  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  3 38  1  0
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  3 40  1  0
  4 41  1  0
  5 42  1  0
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  8 46  1  0
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 24 67  1  0
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 28 70  1  0
 31 71  1  1
 32 72  1  0
 33 73  1  1
 34 74  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -7.011  -1.666  -1.684  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.814  -0.816  -1.672  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.349  -0.080  -2.863  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.095  -0.692  -0.519  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.541  -1.421   0.693  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.863  -0.646   1.880  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.878   0.077   2.721  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.875  -0.815   3.378  0.00  0.00           C+0
HETATM    9  O   UNK     0      -5.732   0.601   3.773  0.00  0.00           O+0
HETATM   10  C   UNK     0      -4.254   1.318   2.153  0.00  0.00           C+0
HETATM   11  O   UNK     0      -3.895   2.144   3.309  0.00  0.00           O+0
HETATM   12  C   UNK     0      -2.842   1.038   1.631  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.252   2.289   1.033  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.882   2.065   0.514  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.673   1.058  -0.553  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.178   2.722   0.954  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.562   2.566   0.500  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.770   1.638  -0.485  0.00  0.00           O+0
HETATM   19  C   UNK     0       3.094   1.565  -0.842  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.280   0.519  -1.942  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.599   0.452  -2.292  0.00  0.00           O+0
HETATM   22  C   UNK     0       5.108  -0.776  -1.970  0.00  0.00           C+0
HETATM   23  N   UNK     0       6.489  -0.700  -1.541  0.00  0.00           N+0
HETATM   24  C   UNK     0       6.860   0.158  -0.433  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.714  -0.662   0.508  0.00  0.00           C+0
HETATM   26  C   UNK     0       8.800  -1.383  -0.198  0.00  0.00           C+0
HETATM   27  O   UNK     0       9.866  -1.589   0.433  0.00  0.00           O+0
HETATM   28  N   UNK     0       8.665  -1.839  -1.545  0.00  0.00           N+0
HETATM   29  C   UNK     0       7.468  -1.477  -2.223  0.00  0.00           C+0
HETATM   30  O   UNK     0       7.230  -1.819  -3.417  0.00  0.00           O+0
HETATM   31  C   UNK     0       4.211  -1.342  -0.862  0.00  0.00           C+0
HETATM   32  O   UNK     0       4.231  -2.719  -0.832  0.00  0.00           O+0
HETATM   33  C   UNK     0       2.863  -0.800  -1.361  0.00  0.00           C+0
HETATM   34  O   UNK     0       2.442  -1.619  -2.423  0.00  0.00           O+0
HETATM   35  H   UNK     0      -7.820  -1.341  -1.017  0.00  0.00           H+0
HETATM   36  H   UNK     0      -7.440  -1.641  -2.720  0.00  0.00           H+0
HETATM   37  H   UNK     0      -6.680  -2.723  -1.493  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.919   0.907  -2.598  0.00  0.00           H+0
HETATM   39  H   UNK     0      -4.619  -0.731  -3.399  0.00  0.00           H+0
HETATM   40  H   UNK     0      -6.186   0.100  -3.561  0.00  0.00           H+0
HETATM   41  H   UNK     0      -4.249  -0.050  -0.622  0.00  0.00           H+0
HETATM   42  H   UNK     0      -6.492  -1.976   0.394  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.843  -2.292   0.898  0.00  0.00           H+0
HETATM   44  H   UNK     0      -6.470  -1.282   2.635  0.00  0.00           H+0
HETATM   45  H   UNK     0      -6.665   0.123   1.602  0.00  0.00           H+0
HETATM   46  H   UNK     0      -3.061  -1.136   2.733  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.426  -1.754   3.676  0.00  0.00           H+0
HETATM   48  H   UNK     0      -3.542  -0.370   4.338  0.00  0.00           H+0
HETATM   49  H   UNK     0      -5.348   0.366   4.649  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.885   1.882   1.546  0.00  0.00           H+0
HETATM   51  H   UNK     0      -3.271   1.592   3.805  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.825   0.228   0.943  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.204   0.700   2.511  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.853   2.670   0.183  0.00  0.00           H+0
HETATM   55  H   UNK     0      -2.285   3.088   1.802  0.00  0.00           H+0
HETATM   56  H   UNK     0      -0.045   0.208  -0.217  0.00  0.00           H+0
HETATM   57  H   UNK     0      -0.319   1.523  -1.500  0.00  0.00           H+0
HETATM   58  H   UNK     0      -1.658   0.616  -0.804  0.00  0.00           H+0
HETATM   59  H   UNK     0      -0.010   3.457   1.739  0.00  0.00           H+0
HETATM   60  H   UNK     0       2.244   2.432   1.380  0.00  0.00           H+0
HETATM   61  H   UNK     0       1.876   3.564   0.072  0.00  0.00           H+0
HETATM   62  H   UNK     0       3.438   2.558  -1.161  0.00  0.00           H+0
HETATM   63  H   UNK     0       3.685   1.260   0.061  0.00  0.00           H+0
HETATM   64  H   UNK     0       2.654   0.826  -2.797  0.00  0.00           H+0
HETATM   65  H   UNK     0       4.999  -1.471  -2.821  0.00  0.00           H+0
HETATM   66  H   UNK     0       5.957   0.465   0.126  0.00  0.00           H+0
HETATM   67  H   UNK     0       7.418   1.062  -0.801  0.00  0.00           H+0
HETATM   68  H   UNK     0       7.022  -1.356   1.044  0.00  0.00           H+0
HETATM   69  H   UNK     0       8.172   0.060   1.226  0.00  0.00           H+0
HETATM   70  H   UNK     0       9.394  -2.409  -2.031  0.00  0.00           H+0
HETATM   71  H   UNK     0       4.391  -0.862   0.104  0.00  0.00           H+0
HETATM   72  H   UNK     0       4.458  -3.026   0.098  0.00  0.00           H+0
HETATM   73  H   UNK     0       2.135  -0.738  -0.554  0.00  0.00           H+0
HETATM   74  H   UNK     0       2.800  -1.294  -3.294  0.00  0.00           H+0
CONECT    1    2   35   36   37                                             
CONECT    2    1    3    4                                                  
CONECT    3    2   38   39   40                                             
CONECT    4    2    5   41                                                  
CONECT    5    4    6   42   43                                             
CONECT    6    5    7   44   45                                             
CONECT    7    6    8    9   10                                             
CONECT    8    7   46   47   48                                             
CONECT    9    7   49                                                       
CONECT   10    7   11   12   50                                             
CONECT   11   10   51                                                       
CONECT   12   10   13   52   53                                             
CONECT   13   12   14   54   55                                             
CONECT   14   13   15   16                                                  
CONECT   15   14   56   57   58                                             
CONECT   16   14   17   59                                                  
CONECT   17   16   18   60   61                                             
CONECT   18   17   19                                                       
CONECT   19   18   20   62   63                                             
CONECT   20   19   21   33   64                                             
CONECT   21   20   22                                                       
CONECT   22   21   23   31   65                                             
CONECT   23   22   24   29                                                  
CONECT   24   23   25   66   67                                             
CONECT   25   24   26   68   69                                             
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   70                                                  
CONECT   29   28   30   23                                                  
CONECT   30   29                                                            
CONECT   31   22   32   33   71                                             
CONECT   32   31   72                                                       
CONECT   33   31   34   20   73                                             
CONECT   34   33   74                                                       
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    3                                                            
CONECT   39    3                                                            
CONECT   40    3                                                            
CONECT   41    4                                                            
CONECT   42    5                                                            
CONECT   43    5                                                            
CONECT   44    6                                                            
CONECT   45    6                                                            
CONECT   46    8                                                            
CONECT   47    8                                                            
CONECT   48    8                                                            
CONECT   49    9                                                            
CONECT   50   10                                                            
CONECT   51   11                                                            
CONECT   52   12                                                            
CONECT   53   12                                                            
CONECT   54   13                                                            
CONECT   55   13                                                            
CONECT   56   15                                                            
CONECT   57   15                                                            
CONECT   58   15                                                            
CONECT   59   16                                                            
CONECT   60   17                                                            
CONECT   61   17                                                            
CONECT   62   19                                                            
CONECT   63   19                                                            
CONECT   64   20                                                            
CONECT   65   22                                                            
CONECT   66   24                                                            
CONECT   67   24                                                            
CONECT   68   25                                                            
CONECT   69   25                                                            
CONECT   70   28                                                            
CONECT   71   31                                                            
CONECT   72   32                                                            
CONECT   73   33                                                            
CONECT   74   34                                                            
MASTER        0    0    0    0    0    0    0    0   74    0  150    0
END

RDKit          3D

74 75  0  0  0  0  0  0  0  0999 V2000
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   -2.2041    0.6997    2.5107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8532    2.6701    0.1826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2847    3.0876    1.8023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0450    0.2078   -0.2165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3194    1.5227   -1.5002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6576    0.6155   -0.8041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0095    3.4567    1.7394 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2437    2.4317    1.3796 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8758    3.5638    0.0720 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4384    2.5584   -1.1609 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6852    1.2602    0.0612 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6541    0.8260   -2.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9986   -1.4711   -2.8211 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9571    0.4646    0.1259 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4182    1.0617   -0.8010 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0216   -1.3562    1.0439 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1719    0.0601    1.2257 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3939   -2.4093   -2.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3908   -0.8619    0.1042 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4581   -3.0264    0.0983 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1348   -0.7375   -0.5537 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8001   -1.2940   -3.2939 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  1
  7 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  2  0
 26 28  1  0
 28 29  1  0
 29 30  2  0
 22 31  1  0
 31 32  1  0
 31 33  1  0
 33 34  1  0
 33 20  1  0
 29 23  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  3 38  1  0
  3 39  1  0
  3 40  1  0
  4 41  1  0
  5 42  1  0
  5 43  1  0
  6 44  1  0
  6 45  1  0
  8 46  1  0
  8 47  1  0
  8 48  1  0
  9 49  1  0
 10 50  1  6
 11 51  1  0
 12 52  1  0
 12 53  1  0
 13 54  1  0
 13 55  1  0
 15 56  1  0
 15 57  1  0
 15 58  1  0
 16 59  1  0
 17 60  1  0
 17 61  1  0
 19 62  1  0
 19 63  1  0
 20 64  1  6
 22 65  1  6
 24 66  1  0
 24 67  1  0
 25 68  1  0
 25 69  1  0
 28 70  1  0
 31 71  1  1
 32 72  1  0
 33 73  1  1
 34 74  1  0
M  END

View in JSmol View NMR Assignments View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₂₄H₄₀N₂O₈

Average Mass

484.5900 Da

Monoisotopic Mass

484.27847 Da

IUPAC Name

1-[(2R,3R,4S,5R)-5-({[(2E,6S,7S)-6,7-dihydroxy-3,7,11-trimethyldodeca-2,10-dien-1-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-1,3-diazinane-2,4-dione

Traditional Name

1-[(2R,3R,4S,5R)-5-({[(2E,6S,7S)-6,7-dihydroxy-3,7,11-trimethyldodeca-2,10-dien-1-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-1,3-diazinane-2,4-dione

CAS Registry Number

Not Available

SMILES

CC(C)=CCCC(C)(O)C(O)CC\C(C)=C\COC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1CCC(=O)NC1=O

InChI Identifier

InChI=1S/C24H40N2O8/c1-15(2)6-5-11-24(4,32)18(27)8-7-16(3)10-13-33-14-17-20(29)21(30)22(34-17)26-12-9-19(28)25-23(26)31/h6,10,17-18,20-22,27,29-30,32H,5,7-9,11-14H2,1-4H3,(H,25,28,31)/b16-10+/t17-,18?,20-,21-,22-,24?/m1/s1

InChI Key

AHUPOCLKEKMZQR-AOUILNQWSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	23987585

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.06	ALOGPS
logP	0.49	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	11.58	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	148.79 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	126.09 m³·mol⁻¹	ChemAxon
Polarizability	52.66 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002682

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78436548

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139583838

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zafrir Ilan E, Torres MR, Prudhomme J, Le Roch K, Jensen PR, Fenical W: Farnesides A and B, sesquiterpenoid nucleoside ethers from a marine-derived Streptomyces sp., strain CNT-372 from Fiji. J Nat Prod. 2013 Sep 27;76(9):1815-8. doi: 10.1021/np400351t. Epub 2013 Aug 29. [PubMed:23987585 ]

Showing NP-Card for Farneside B (NP0012074)

MOL for NP0012074 (Farneside B)

3D MOL for NP0012074 (Farneside B)

3D SDF for NP0012074 (Farneside B)

3D-SDF for NP0012074 (Farneside B)

PDB for NP0012074 (Farneside B)

3D PDB for NP0012074 (Farneside B)

SMILES for NP0012074 (Farneside B)

INCHI for NP0012074 (Farneside B)

Structure for NP0012074 (Farneside B)

3D Structure for NP0012074 (Farneside B)