Np mrd loader

Record Information
Version2.0
Created at2021-01-05 21:22:08 UTC
Updated at2021-07-15 17:09:55 UTC
NP-MRD IDNP0011786
Secondary Accession NumbersNone
Natural Product Identification
Common NameXantholysin A
Provided ByNPAtlasNPAtlas Logo
Description Xantholysin A is found in Pseudomonas. Xantholysin A was first documented in 2013 (PMID: 23690965). Based on a literature review a small amount of articles have been published on Xantholysin A (PMID: 33533101) (PMID: 26059350) (PMID: 25097020).
Structure
Thumb
Synonyms
ValueSource
4-[(1-{[1-({1-[(1-{[3-(butan-2-yl)-5,8,11,14,17,20,23-heptahydroxy-6,15-bis[2-(C-hydroxycarbonimidoyl)ethyl]-9,12,18-tris(2-methylpropyl)-2-oxo-21-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22-heptaazacyclopentacosa-4,7,10,13,16,19,22-heptaen-24-yl]-C-hydroxycarbonimidoyl}-3-(C-hydroxycarbonimidoyl)propyl)-C-hydroxycarbonimidoyl]-3-methylbutyl}-C-hydroxycarbonimidoyl)-2-methylpropyl]-C-hydroxycarbonimidoyl}-3-(C-hydroxycarbonimidoyl)propyl)-C-hydroxycarbonimidoyl]-4-({2-[(1,3-dihydroxydecylidene)amino]-1-hydroxy-4-methylpentylidene}amino)butanoateGenerator
Chemical FormulaC84H146N18O23
Average Mass1776.1950 Da
Monoisotopic Mass1775.08082 Da
IUPAC Name(4R)-4-{[(1R)-1-{[(1S)-1-{[(1R)-1-{[(1R)-1-{[(3R,6R,9R,12R,15S,18R,21S,24S)-3-[(2R)-butan-2-yl]-6,15-bis(2-carbamoylethyl)-9,12,18-tris(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-21-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22-heptaazacyclopentacosan-24-yl]carbamoyl}-3-carbamoylpropyl]carbamoyl}-3-methylbutyl]carbamoyl}-2-methylpropyl]carbamoyl}-3-carbamoylpropyl]carbamoyl}-4-[(2R)-2-(3-hydroxydecanamido)-4-methylpentanamido]butanoic acid
Traditional Name(4R)-4-{[(1R)-1-{[(1S)-1-{[(1R)-1-{[(1R)-1-{[(3R,6R,9R,12R,15S,18R,21S,24S)-3-[(2R)-butan-2-yl]-6,15-bis(2-carbamoylethyl)-21-isopropyl-9,12,18-tris(2-methylpropyl)-2,5,8,11,14,17,20,23-octaoxo-1-oxa-4,7,10,13,16,19,22-heptaazacyclopentacosan-24-yl]carbamoyl}-3-carbamoylpropyl]carbamoyl}-3-methylbutyl]carbamoyl}-2-methylpropyl]carbamoyl}-3-carbamoylpropyl]carbamoyl}-4-[(2R)-2-(3-hydroxydecanamido)-4-methylpentanamido]butanoic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCC(O)CC(=O)NC(CC(C)C)C(=O)NC(CCC(O)=O)C(=O)NC(CCC(N)=O)C(=O)NC(C(C)C)C(=O)NC(CC(C)C)C(=O)NC(CCC(N)=O)C(=O)NC1COC(=O)C(NC(=O)C(CCC(N)=O)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)C(CCC(N)=O)NC(=O)C(CC(C)C)NC(=O)C(NC1=O)C(C)C)C(C)CC
InChI Identifier
InChI=1S/C84H146N18O23/c1-18-20-21-22-23-24-50(103)40-66(108)89-56(35-42(3)4)76(116)94-55(29-34-67(109)110)71(111)90-53(27-32-64(87)106)74(114)100-68(47(13)14)82(122)97-60(39-46(11)12)79(119)92-52(26-31-63(86)105)73(113)99-61-41-125-84(124)70(49(17)19-2)102-75(115)54(28-33-65(88)107)93-77(117)57(36-43(5)6)96-80(120)58(37-44(7)8)95-72(112)51(25-30-62(85)104)91-78(118)59(38-45(9)10)98-83(123)69(48(15)16)101-81(61)121/h42-61,68-70,103H,18-41H2,1-17H3,(H2,85,104)(H2,86,105)(H2,87,106)(H2,88,107)(H,89,108)(H,90,111)(H,91,118)(H,92,119)(H,93,117)(H,94,116)(H,95,112)(H,96,120)(H,97,122)(H,98,123)(H,99,113)(H,100,114)(H,101,121)(H,102,115)(H,109,110)
InChI KeyCNAFSPBMMDALIS-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
PseudomonasNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.2ChemAxon
pKa (Strongest Acidic)3.96ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count20ChemAxon
Polar Surface Area663.59 ŲChemAxon
Rotatable Bond Count50ChemAxon
Refractivity452.4 m³·mol⁻¹ChemAxon
Polarizability189.3 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA024694
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound145720589
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Li W, Rokni-Zadeh H, De Vleeschouwer M, Ghequire MG, Sinnaeve D, Xie GL, Rozenski J, Madder A, Martins JC, De Mot R: The antimicrobial compound xantholysin defines a new group of Pseudomonas cyclic lipopeptides. PLoS One. 2013 May 17;8(5):e62946. doi: 10.1371/journal.pone.0062946. Print 2013. [PubMed:23690965 ]
  2. Uchiyama C, Fukuda A, Mukaiyama M, Nakazawa Y, Kuramochi Y, Muguruma K, Arimoto M, Ninomiya A, Kako K, Katsuyama Y, Konno S, Taguchi A, Takayama K, Taniguchi A, Nagumo Y, Usui T, Hayashi Y: Structural Revision of Natural Cyclic Depsipeptide MA026 Established by Total Synthesis and Biosynthetic Gene Cluster Analysis. Angew Chem Int Ed Engl. 2021 Apr 12;60(16):8792-8797. doi: 10.1002/anie.202015193. Epub 2021 Mar 8. [PubMed:33533101 ]
  3. Molina-Santiago C, Udaondo Z, Daddaoua A, Roca A, Martin J, Perez-Victoria I, Reyes F, Ramos JL: Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics. Microb Biotechnol. 2015 Jul;8(4):716-25. doi: 10.1111/1751-7915.12295. Epub 2015 Jun 8. [PubMed:26059350 ]
  4. Pascual J, Garcia-Lopez M, Carmona C, Sousa Tda S, de Pedro N, Cautain B, Martin J, Vicente F, Reyes F, Bills GF, Genilloud O: Pseudomonas soli sp. nov., a novel producer of xantholysin congeners. Syst Appl Microbiol. 2014 Sep;37(6):412-6. doi: 10.1016/j.syapm.2014.07.003. Epub 2014 Jul 21. [PubMed:25097020 ]