NP-MRD: Showing NP-Card for Penicimarin F (NP0011582)

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Record Information

Version

2.0

Created at

2021-01-05 21:13:16 UTC

Updated at

2026-02-06 16:00:45 UTC

NP-MRD ID

NP0011582

Natural Product DOI

https://doi.org/10.57994/5534

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Penicimarin F

Provided By

NPAtlas

Description

6,8-Dihydroxy-3,4-bis(hydroxymethyl)-1H-isochromen-1-one belongs to the class of organic compounds known as isocoumarins and derivatives. These are polycyclic compounds containing an isochromane which bears a ketone at the carbon C1. Penicimarin F is found in Penicillium. Penicimarin F was first documented in 2013 (PMID: 23477451). Based on a literature review very few articles have been published on 6,8-dihydroxy-3,4-bis(hydroxymethyl)-1H-isochromen-1-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242116573D          

 27 28  0  0  0  0            999 V2000
   -0.0582    3.3283    0.5090 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2547    2.1004    0.3495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4829    1.6145    0.4365 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7782    0.3702    0.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1870   -0.1246    0.3966 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0539    0.9177    0.6667 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7388   -0.5563    0.0122 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2068   -1.9219   -0.1326 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2632   -2.8434   -0.3945 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5460   -0.0939   -0.0856 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5755   -0.9601   -0.3504 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8645   -0.4490   -0.4415 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8687   -1.3873   -0.7139 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1157    0.8747   -0.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0902    1.8054   -0.0007 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4365    3.1167    0.1517 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8107    1.2745    0.0861 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2903   -0.8599    1.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4993   -0.6630   -0.5249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8792    0.6316    1.1206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7536   -2.2918    0.7825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9961   -2.0237   -0.9361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4053   -3.4220   -1.1800 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4369   -2.0078   -0.4903 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0868   -1.5651   -1.7020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1205    1.2578   -0.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8953    3.8780    0.3371 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  4  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 17  2  1  0  0  0  0
 17 10  1  0  0  0  0
  5 18  1  0  0  0  0
  5 19  1  0  0  0  0
  6 20  1  0  0  0  0
  8 21  1  0  0  0  0
  8 22  1  0  0  0  0
  9 23  1  0  0  0  0
 11 24  1  0  0  0  0
 13 25  1  0  0  0  0
 14 26  1  0  0  0  0
 16 27  1  0  0  0  0
M  END


  Mrv1652306242116573D          

 27 28  0  0  0  0            999 V2000
   -0.0582    3.3283    0.5090 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2547    2.1004    0.3495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4829    1.6145    0.4365 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7782    0.3702    0.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1870   -0.1246    0.3966 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0539    0.9177    0.6667 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7388   -0.5563    0.0122 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2068   -1.9219   -0.1326 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2632   -2.8434   -0.3945 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5460   -0.0939   -0.0856 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5755   -0.9601   -0.3504 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8645   -0.4490   -0.4415 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8687   -1.3873   -0.7139 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1157    0.8747   -0.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0902    1.8054   -0.0007 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4365    3.1167    0.1517 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8107    1.2745    0.0861 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2903   -0.8599    1.2290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4993   -0.6630   -0.5249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8792    0.6316    1.1206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7536   -2.2918    0.7825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9961   -2.0237   -0.9361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4053   -3.4220   -1.1800 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4369   -2.0078   -0.4903 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0868   -1.5651   -1.7020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1205    1.2578   -0.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8953    3.8780    0.3371 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  4  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 17  2  1  0  0  0  0
 17 10  1  0  0  0  0
  5 18  1  0  0  0  0
  5 19  1  0  0  0  0
  6 20  1  0  0  0  0
  8 21  1  0  0  0  0
  8 22  1  0  0  0  0
  9 23  1  0  0  0  0
 11 24  1  0  0  0  0
 13 25  1  0  0  0  0
 14 26  1  0  0  0  0
 16 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0011582

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C(O[H])=C2C(=O)OC(=C(C2=C1[H])C([H])([H])O[H])C([H])([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C11H10O6/c12-3-7-6-1-5(14)2-8(15)10(6)11(16)17-9(7)4-13/h1-2,12-15H,3-4H2

> <INCHI_KEY>
BMXXWGOJVOYVJX-UHFFFAOYSA-N

> <FORMULA>
C11H10O6

> <MOLECULAR_WEIGHT>
238.195

> <EXACT_MASS>
238.047738042

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
27

> <JCHEM_AVERAGE_POLARIZABILITY>
22.22349694502001

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
6,8-dihydroxy-3,4-bis(hydroxymethyl)-1H-isochromen-1-one

> <ALOGPS_LOGP>
-0.03

> <JCHEM_LOGP>
0.2700458796666665

> <ALOGPS_LOGS>
-1.92

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.190047810005474

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.351804040981897

> <JCHEM_PKA_STRONGEST_BASIC>
-2.892484634382072

> <JCHEM_POLAR_SURFACE_AREA>
107.22000000000001

> <JCHEM_REFRACTIVITY>
58.8673

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.84e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6,8-dihydroxy-3,4-bis(hydroxymethyl)isochromen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0      -0.058   3.328   0.509  0.00  0.00           O+0
HETATM    2  C   UNK     0      -0.255   2.100   0.350  0.00  0.00           C+0
HETATM    3  O   UNK     0      -1.483   1.615   0.437  0.00  0.00           O+0
HETATM    4  C   UNK     0      -1.778   0.370   0.287  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.187  -0.125   0.397  0.00  0.00           C+0
HETATM    6  O   UNK     0      -4.054   0.918   0.667  0.00  0.00           O+0
HETATM    7  C   UNK     0      -0.739  -0.556   0.012  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.207  -1.922  -0.133  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.263  -2.843  -0.395  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.546  -0.094  -0.086  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.575  -0.960  -0.350  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.865  -0.449  -0.442  0.00  0.00           C+0
HETATM   13  O   UNK     0       3.869  -1.387  -0.714  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.116   0.875  -0.275  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.090   1.805  -0.001  0.00  0.00           C+0
HETATM   16  O   UNK     0       2.437   3.117   0.152  0.00  0.00           O+0
HETATM   17  C   UNK     0       0.811   1.274   0.086  0.00  0.00           C+0
HETATM   18  H   UNK     0      -3.290  -0.860   1.229  0.00  0.00           H+0
HETATM   19  H   UNK     0      -3.499  -0.663  -0.525  0.00  0.00           H+0
HETATM   20  H   UNK     0      -4.879   0.632   1.121  0.00  0.00           H+0
HETATM   21  H   UNK     0      -1.754  -2.292   0.783  0.00  0.00           H+0
HETATM   22  H   UNK     0      -1.996  -2.024  -0.936  0.00  0.00           H+0
HETATM   23  H   UNK     0      -0.405  -3.422  -1.180  0.00  0.00           H+0
HETATM   24  H   UNK     0       1.437  -2.008  -0.490  0.00  0.00           H+0
HETATM   25  H   UNK     0       4.087  -1.565  -1.702  0.00  0.00           H+0
HETATM   26  H   UNK     0       4.120   1.258  -0.348  0.00  0.00           H+0
HETATM   27  H   UNK     0       1.895   3.878   0.337  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3   17                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    7                                                  
CONECT    5    4    6   18   19                                             
CONECT    6    5   20                                                       
CONECT    7    4    8   10                                                  
CONECT    8    7    9   21   22                                             
CONECT    9    8   23                                                       
CONECT   10    7   11   17                                                  
CONECT   11   10   12   24                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12   25                                                       
CONECT   14   12   15   26                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15   27                                                       
CONECT   17   15    2   10                                                  
CONECT   18    5                                                            
CONECT   19    5                                                            
CONECT   20    6                                                            
CONECT   21    8                                                            
CONECT   22    8                                                            
CONECT   23    9                                                            
CONECT   24   11                                                            
CONECT   25   13                                                            
CONECT   26   14                                                            
CONECT   27   16                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   56    0
END

View in JSmol View NMR Assignments View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₁₁H₁₀O₆

Average Mass

238.1950 Da

Monoisotopic Mass

238.04774 Da

IUPAC Name

6,8-dihydroxy-3,4-bis(hydroxymethyl)-1H-isochromen-1-one

Traditional Name

6,8-dihydroxy-3,4-bis(hydroxymethyl)isochromen-1-one

CAS Registry Number

Not Available

SMILES

OCC1=C(CO)C2=CC(O)=CC(O)=C2C(=O)O1

InChI Identifier

InChI=1S/C11H10O6/c12-3-7-6-1-5(14)2-8(15)10(6)11(16)17-9(7)4-13/h1-2,12-15H,3-4H2

InChI Key

BMXXWGOJVOYVJX-UHFFFAOYSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, dmso, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 600.0, Dimethylsulfoxide-d6, simulated)	epoynton@sfu.ca	Not Available	Not Available	2026-02-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150.0, Dimethylsulfoxide-d6, simulated)	epoynton@sfu.ca	Not Available	Not Available	2026-02-06	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Penicillium	NPAtlas	23477451
Penicillium sp. MWZ14-4		Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isocoumarins and derivatives. These are polycyclic compounds containing an isochromane which bears a ketone at the carbon C1.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isocoumarins and derivatives

Sub Class

Not Available

Direct Parent

Isocoumarins and derivatives

Alternative Parents

Substituents

Isocoumarin
Benzopyran
2-benzopyran
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Pyranone
Pyran
Benzenoid
Heteroaromatic compound
Vinylogous acid
Lactone
Oxacycle
Organoheterocyclic compound
Aromatic alcohol
Alcohol
Primary alcohol
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.03	ALOGPS
logP	0.27	ChemAxon
logS	-1.9	ALOGPS
pKa (Strongest Acidic)	8.35	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	107.22 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	58.87 m³·mol⁻¹	ChemAxon
Polarizability	22.22 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA001190

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29417418

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71664849

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Qi J, Shao CL, Li ZY, Gan LS, Fu XM, Bian WT, Zhao HY, Wang CY: Isocoumarin derivatives and benzofurans from a sponge-derived Penicillium sp. fungus. J Nat Prod. 2013 Apr 26;76(4):571-9. doi: 10.1021/np3007556. Epub 2013 Mar 11. [PubMed:23477451 ]
DOI: 10.1021/np3007556
PMID: 23477451

Showing NP-Card for Penicimarin F (NP0011582)

MOL for NP0011582 (Penicimarin F)

3D MOL for NP0011582 (Penicimarin F)

3D SDF for NP0011582 (Penicimarin F)

3D-SDF for NP0011582 (Penicimarin F)

PDB for NP0011582 (Penicimarin F)

3D PDB for NP0011582 (Penicimarin F)

SMILES for NP0011582 (Penicimarin F)

INCHI for NP0011582 (Penicimarin F)

Structure for NP0011582 (Penicimarin F)

3D Structure for NP0011582 (Penicimarin F)