NP-MRD: Showing NP-Card for Cyanosporaside E (NP0011570)

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Record Information

Version

2.0

Created at

2021-01-05 21:12:50 UTC

Updated at

2021-07-15 17:09:19 UTC

NP-MRD ID

NP0011570

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cyanosporaside E

Provided By

NPAtlas

Description

Cyanosporaside E is found in Salinispora pacifica and Salinispora pacifica CNS-143. Based on a literature review very few articles have been published on 2-[(3S,3aR)-7-chloro-3,3a-dihydroxy-3H,3aH-cyclopenta[a]inden-5-yl]acetonitrile.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242116573D          

 28 30  0  0  0  0            999 V2000
    4.5362   -1.6580    1.9872 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1813   -1.1085    1.0502 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7498   -0.4072   -0.1441 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3957    0.1857    0.0043 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2933    1.4718    0.4925 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0647    2.1091    0.6657 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9762    3.7482    1.2903 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -0.0615    1.3980    0.3269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0170    0.0889   -0.1745 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2317   -0.4706   -0.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3586   -0.2974   -0.4206 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6540   -0.4861   -1.7916 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2343    0.8669    0.0241 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4647    1.8202    0.4318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5843    0.3067   -0.1773 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5194   -1.0289    0.0061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0562   -1.3711    0.3404 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8602   -1.3725    1.6923 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7357   -1.0820   -1.0324 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4605    0.4242   -0.3522 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1689    2.0476    0.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3417   -1.4926   -0.7025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9351   -1.0180   -2.2131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8458    2.7871    0.7945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4356    0.9119   -0.4232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3139   -1.7131   -0.0643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8998   -2.3591   -0.1264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8952   -2.3012    2.0448 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 10  4  1  0  0  0  0
 17 11  1  0  0  0  0
 14  8  1  0  0  0  0
  3 19  1  0  0  0  0
  3 20  1  0  0  0  0
  5 21  1  0  0  0  0
 10 22  1  0  0  0  0
 12 23  1  0  0  0  0
 14 24  1  0  0  0  0
 15 25  1  0  0  0  0
 16 26  1  0  0  0  0
 17 27  1  6  0  0  0
 18 28  1  0  0  0  0
M  END


  Mrv1652306242116573D          

 28 30  0  0  0  0            999 V2000
    4.5362   -1.6580    1.9872 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1813   -1.1085    1.0502 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7498   -0.4072   -0.1441 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3957    0.1857    0.0043 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2933    1.4718    0.4925 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0647    2.1091    0.6657 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9762    3.7482    1.2903 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -0.0615    1.3980    0.3269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0170    0.0889   -0.1745 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2317   -0.4706   -0.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3586   -0.2974   -0.4206 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6540   -0.4861   -1.7916 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2343    0.8669    0.0241 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4647    1.8202    0.4318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5843    0.3067   -0.1773 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5194   -1.0289    0.0061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0562   -1.3711    0.3404 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8602   -1.3725    1.6923 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7357   -1.0820   -1.0324 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4605    0.4242   -0.3522 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1689    2.0476    0.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3417   -1.4926   -0.7025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9351   -1.0180   -2.2131 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8458    2.7871    0.7945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4356    0.9119   -0.4232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3139   -1.7131   -0.0643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8998   -2.3591   -0.1264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8952   -2.3012    2.0448 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 10  4  1  0  0  0  0
 17 11  1  0  0  0  0
 14  8  1  0  0  0  0
  3 19  1  0  0  0  0
  3 20  1  0  0  0  0
  5 21  1  0  0  0  0
 10 22  1  0  0  0  0
 12 23  1  0  0  0  0
 14 24  1  0  0  0  0
 15 25  1  0  0  0  0
 16 26  1  0  0  0  0
 17 27  1  6  0  0  0
 18 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0011570

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])C([H])=C([H])C2=C([H])C3=C(Cl)C([H])=C(C([H])=C3[C@@]12O[H])C([H])([H])C#N

> <INCHI_IDENTIFIER>
InChI=1S/C14H10ClNO2/c15-12-6-8(3-4-16)5-11-10(12)7-9-1-2-13(17)14(9,11)18/h1-2,5-7,13,17-18H,3H2/t13-,14+/m0/s1

> <INCHI_KEY>
FXSJXHBMLMIZOI-UONOGXRCSA-N

> <FORMULA>
C14H10ClNO2

> <MOLECULAR_WEIGHT>
259.69

> <EXACT_MASS>
259.0400063

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
25.631948958364326

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(3S,3aR)-7-chloro-3,3a-dihydroxy-3H,3aH-cyclopenta[a]inden-5-yl]acetonitrile

> <ALOGPS_LOGP>
1.78

> <JCHEM_LOGP>
1.228364554333333

> <ALOGPS_LOGS>
-3.38

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.540822080197902

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.300911698107395

> <JCHEM_PKA_STRONGEST_BASIC>
-3.501067127463985

> <JCHEM_POLAR_SURFACE_AREA>
64.25

> <JCHEM_REFRACTIVITY>
70.47509999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.08e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(3S,3aR)-7-chloro-3,3a-dihydroxy-3H-cyclopenta[a]inden-5-yl]acetonitrile

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       4.536  -1.658   1.987  0.00  0.00           N+0
HETATM    2  C   UNK     0       4.181  -1.109   1.050  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.750  -0.407  -0.144  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.396   0.186   0.004  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.293   1.472   0.493  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.065   2.109   0.666  0.00  0.00           C+0
HETATM    7 Cl   UNK     0       0.976   3.748   1.290  0.00  0.00          Cl+0
HETATM    8  C   UNK     0      -0.062   1.398   0.327  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.017   0.089  -0.175  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.232  -0.471  -0.316  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.359  -0.297  -0.421  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.654  -0.486  -1.792  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.234   0.867   0.024  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.465   1.820   0.432  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.584   0.307  -0.177  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.519  -1.029   0.006  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.056  -1.371   0.340  0.00  0.00           C+0
HETATM   18  O   UNK     0      -1.860  -1.373   1.692  0.00  0.00           O+0
HETATM   19  H   UNK     0       3.736  -1.082  -1.032  0.00  0.00           H+0
HETATM   20  H   UNK     0       4.460   0.424  -0.352  0.00  0.00           H+0
HETATM   21  H   UNK     0       3.169   2.048   0.765  0.00  0.00           H+0
HETATM   22  H   UNK     0       1.342  -1.493  -0.703  0.00  0.00           H+0
HETATM   23  H   UNK     0      -0.935  -1.018  -2.213  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.846   2.787   0.795  0.00  0.00           H+0
HETATM   25  H   UNK     0      -4.436   0.912  -0.423  0.00  0.00           H+0
HETATM   26  H   UNK     0      -4.314  -1.713  -0.064  0.00  0.00           H+0
HETATM   27  H   UNK     0      -1.900  -2.359  -0.126  0.00  0.00           H+0
HETATM   28  H   UNK     0      -1.895  -2.301   2.045  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   19   20                                             
CONECT    4    3    5   10                                                  
CONECT    5    4    6   21                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   14                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9    4   22                                                  
CONECT   11    9   12   13   17                                             
CONECT   12   11   23                                                       
CONECT   13   11   14   15                                                  
CONECT   14   13    8   24                                                  
CONECT   15   13   16   25                                                  
CONECT   16   15   17   26                                                  
CONECT   17   16   18   11   27                                             
CONECT   18   17   28                                                       
CONECT   19    3                                                            
CONECT   20    3                                                            
CONECT   21    5                                                            
CONECT   22   10                                                            
CONECT   23   12                                                            
CONECT   24   14                                                            
CONECT   25   15                                                            
CONECT   26   16                                                            
CONECT   27   17                                                            
CONECT   28   18                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   60    0
END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₄H₁₀ClNO₂

Average Mass

259.6900 Da

Monoisotopic Mass

259.04001 Da

IUPAC Name

2-[(3S,3aR)-7-chloro-3,3a-dihydroxy-3H,3aH-cyclopenta[a]inden-5-yl]acetonitrile

Traditional Name

2-[(3S,3aR)-7-chloro-3,3a-dihydroxy-3H-cyclopenta[a]inden-5-yl]acetonitrile

CAS Registry Number

Not Available

SMILES

O[C@H]1C=CC2=CC3=C(Cl)C=C(CC#N)C=C3[C@@]12O

InChI Identifier

InChI=1S/C14H10ClNO2/c15-12-6-8(3-4-16)5-11-10(12)7-9-1-2-13(17)14(9,11)18/h1-2,5-7,13,17-18H,3H2/t13-,14+/m0/s1

InChI Key

FXSJXHBMLMIZOI-UONOGXRCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Salinispora pacifica	LOTUS Database	35616633
Salinispora pacifica CNS-143	NPAtlas	23458364

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.78	ALOGPS
logP	1.23	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	12.3	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	64.25 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	70.48 m³·mol⁻¹	ChemAxon
Polarizability	25.63 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA016669

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29215592

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102195494

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Cyanosporaside E (NP0011570)

MOL for NP0011570 (Cyanosporaside E)

3D MOL for NP0011570 (Cyanosporaside E)

3D SDF for NP0011570 (Cyanosporaside E)

3D-SDF for NP0011570 (Cyanosporaside E)

PDB for NP0011570 (Cyanosporaside E)

3D PDB for NP0011570 (Cyanosporaside E)

SMILES for NP0011570 (Cyanosporaside E)

INCHI for NP0011570 (Cyanosporaside E)

Structure for NP0011570 (Cyanosporaside E)

3D Structure for NP0011570 (Cyanosporaside E)