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Record Information
Version2.0
Created at2021-01-05 21:07:31 UTC
Updated at2026-02-05 04:01:47 UTC
NP-MRD IDNP0011430
Natural Product DOIhttps://doi.org/10.57994/5356
Secondary Accession NumbersNone
Natural Product Identification
Common Name6-hydroxymetatacarboline D
Provided ByNPAtlasNPAtlas Logo
Description(2S)-1-[3-(3-{[(1S,2R)-1-carboxy-2-hydroxypropyl]carbamoyl}-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl)propanoyl]pyrrolidine-2-carboxylic acid belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. 6-hydroxymetatacarboline D is found in Mycena metata. 6-hydroxymetatacarboline D was first documented in 2013 (PMID: 23330951). Based on a literature review very few articles have been published on (2S)-1-[3-(3-{[(1S,2R)-1-carboxy-2-hydroxypropyl]carbamoyl}-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl)propanoyl]pyrrolidine-2-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
(2S)-1-[3-(3-{[(1S,2R)-1-carboxy-2-hydroxypropyl]carbamoyl}-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl)propanoyl]pyrrolidine-2-carboxylateGenerator
Chemical FormulaC24H26N4O8
Average Mass498.4920 Da
Monoisotopic Mass498.17506 Da
IUPAC Name(2S)-1-[3-(3-{[(1S,2R)-1-carboxy-2-hydroxypropyl]carbamoyl}-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl)propanoyl]pyrrolidine-2-carboxylic acid
Traditional Name(2S)-1-[3-(3-{[(1S,2R)-1-carboxy-2-hydroxypropyl]carbamoyl}-6-hydroxy-9H-pyrido[3,4-b]indol-1-yl)propanoyl]pyrrolidine-2-carboxylic acid
CAS Registry NumberNot Available
SMILES
C[C@@H](O)[C@H](NC(=O)C1=NC(CCC(=O)N2CCC[C@H]2C(O)=O)=C2NC3=C(C=C(O)C=C3)C2=C1)C(O)=O
InChI Identifier
InChI=1S/C24H26N4O8/c1-11(29)20(24(35)36)27-22(32)17-10-14-13-9-12(30)4-5-15(13)26-21(14)16(25-17)6-7-19(31)28-8-2-3-18(28)23(33)34/h4-5,9-11,18,20,26,29-30H,2-3,6-8H2,1H3,(H,27,32)(H,33,34)(H,35,36)/t11-,18+,20+/m1/s1
InChI KeyHYBYPROKTWYUIQ-PEECDGGASA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 150 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 250 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 175 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 100 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 225 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 200 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 125 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 25 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, Dimethylsulfoxide-d6, simulated)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR1H NMR Spectrum (1D, 600.0, Dimethylsulfoxide-d6, simulated)epoynton@sfu.caNot AvailableNot Available2026-02-05View Spectrum
1D NMR13C NMR Spectrum (1D, 150.0, Dimethylsulfoxide-d6, simulated)epoynton@sfu.caNot AvailableNot Available2026-02-05View Spectrum
Species
Species of Origin
Species NameSourceReference
Mycena metata
      Not Available
Mycena metataNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassHarmala alkaloids
Sub ClassNot Available
Direct ParentHarmala alkaloids
Alternative Parents
Substituents
  • Harman
  • Pyridoindole
  • N-acyl-alpha amino acid or derivatives
  • Beta-carboline
  • N-acyl-alpha-amino acid
  • Proline or derivatives
  • N-acyl-l-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Hydroxyindole
  • Pyridine carboxylic acid or derivatives
  • Indole or derivatives
  • Indole
  • N-acylpyrrolidine
  • Pyrrolidine carboxylic acid
  • Pyrrolidine carboxylic acid or derivatives
  • 2-heteroaryl carboxamide
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Beta-hydroxy acid
  • Dicarboxylic acid or derivatives
  • Hydroxy acid
  • Benzenoid
  • Pyridine
  • Pyrrole
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Heteroaromatic compound
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Carboxamide group
  • Organoheterocyclic compound
  • Azacycle
  • Carboxylic acid derivative
  • Carboxylic acid
  • Organooxygen compound
  • Alcohol
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Carbonyl group
  • Organic oxide
  • Organic oxygen compound
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1ALOGPS
logP0.14ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)3.38ChemAxon
pKa (Strongest Basic)0.87ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area193.15 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity123.91 m³·mol⁻¹ChemAxon
Polarizability51.01 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA002890
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID28637704
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71578715
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Jaeger RJ, Lamshoft M, Gottfried S, Spiteller M, Spiteller P: HR-MALDI-MS imaging assisted screening of beta-carboline alkaloids discovered from Mycena metata. J Nat Prod. 2013 Feb 22;76(2):127-34. doi: 10.1021/np300455a. Epub 2013 Jan 18. [PubMed:23330951 ]
  2. DOI: 10.1021/np300455a
  3. PMID: 23330951