NP-MRD: Showing NP-Card for N-(2-aminoethyl)-glycine (NP0011252)

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Record Information

Version

1.0

Created at

2021-01-05 21:00:35 UTC

Updated at

2021-07-15 17:08:23 UTC

NP-MRD ID

NP0011252

Secondary Accession Numbers

None

Natural Product Identification

Common Name

N-(2-aminoethyl)-glycine

Provided By

NPAtlas

Description

2-[(2-Aminoethyl)amino]acetic acid belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). N-(2-aminoethyl)-glycine is found in Cyanobacterium. It was first documented in 2005 (PMID: 15809158). Based on a literature review a small amount of articles have been published on 2-[(2-aminoethyl)amino]acetic acid (PMID: 23145061) (PMID: 32838227) (PMID: 25113858) (PMID: 20162588).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242116553D          

 18 17  0  0  0  0            999 V2000
    3.1704   -0.2951    0.2734 N   0  0  2  0  0  0  0  0  0  0  0  0
    1.9485    0.2787    0.7689 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8129   -0.0934   -0.1373 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4617    0.2926    0.3469 N   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4867    0.0057   -0.6312 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7345   -0.4857   -0.0001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0084   -1.6307    0.0129 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4558    0.5032    0.5761 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5634    0.0894   -0.5706 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1629   -1.3504    0.3321 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7587   -0.0224    1.7804 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0939    1.3952    0.7247 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9330    0.2449   -1.1610 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7824   -1.2136   -0.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5105    1.3798    0.4979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0658   -0.8333   -1.3128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6940    0.8571   -1.2852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8088    1.2380   -0.0463 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  1  9  1  0  0  0  0
  1 10  1  0  0  0  0
  2 11  1  0  0  0  0
  2 12  1  0  0  0  0
  3 13  1  0  0  0  0
  3 14  1  0  0  0  0
  4 15  1  0  0  0  0
  5 16  1  0  0  0  0
  5 17  1  0  0  0  0
  8 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0011252

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C([H])([H])N([H])C([H])([H])C([H])([H])N([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C4H10N2O2/c5-1-2-6-3-4(7)8/h6H,1-3,5H2,(H,7,8)

> <INCHI_KEY>
PIINGYXNCHTJTF-UHFFFAOYSA-N

> <FORMULA>
C4H10N2O2

> <MOLECULAR_WEIGHT>
118.136

> <EXACT_MASS>
118.07422757

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
18

> <JCHEM_AVERAGE_POLARIZABILITY>
11.905976086793281

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(2-aminoethyl)amino]acetic acid

> <ALOGPS_LOGP>
-3.30

> <JCHEM_LOGP>
-3.9699307227279905

> <ALOGPS_LOGS>
0.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.1685727864557043

> <JCHEM_PKA_STRONGEST_BASIC>
10.063138162596534

> <JCHEM_POLAR_SURFACE_AREA>
75.35

> <JCHEM_REFRACTIVITY>
28.7278

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.69e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2-aminoethyl)amino]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       3.170  -0.295   0.273  0.00  0.00           N+0
HETATM    2  C   UNK     0       1.948   0.279   0.769  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.813  -0.093  -0.137  0.00  0.00           C+0
HETATM    4  N   UNK     0      -0.462   0.293   0.347  0.00  0.00           N+0
HETATM    5  C   UNK     0      -1.487   0.006  -0.631  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.735  -0.486  -0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -3.008  -1.631   0.013  0.00  0.00           O+0
HETATM    8  O   UNK     0      -3.456   0.503   0.576  0.00  0.00           O+0
HETATM    9  H   UNK     0       3.563   0.089  -0.571  0.00  0.00           H+0
HETATM   10  H   UNK     0       3.163  -1.350   0.332  0.00  0.00           H+0
HETATM   11  H   UNK     0       1.759  -0.022   1.780  0.00  0.00           H+0
HETATM   12  H   UNK     0       2.094   1.395   0.725  0.00  0.00           H+0
HETATM   13  H   UNK     0       0.933   0.245  -1.161  0.00  0.00           H+0
HETATM   14  H   UNK     0       0.782  -1.214  -0.169  0.00  0.00           H+0
HETATM   15  H   UNK     0      -0.510   1.380   0.498  0.00  0.00           H+0
HETATM   16  H   UNK     0      -1.066  -0.833  -1.313  0.00  0.00           H+0
HETATM   17  H   UNK     0      -1.694   0.857  -1.285  0.00  0.00           H+0
HETATM   18  H   UNK     0      -3.809   1.238  -0.046  0.00  0.00           H+0
CONECT    1    2    9   10                                                  
CONECT    2    1    3   11   12                                             
CONECT    3    2    4   13   14                                             
CONECT    4    3    5   15                                                  
CONECT    5    4    6   16   17                                             
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6   18                                                       
CONECT    9    1                                                            
CONECT   10    1                                                            
CONECT   11    2                                                            
CONECT   12    2                                                            
CONECT   13    3                                                            
CONECT   14    3                                                            
CONECT   15    4                                                            
CONECT   16    5                                                            
CONECT   17    5                                                            
CONECT   18    8                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

View in JSmol View NMR Assignments

Synonyms

Value	Source
2-[(2-Aminoethyl)amino]acetate	Generator
N-(2-Aminoethyl)glycine dihydrate	MeSH
N-2-Aminoethylglycine	MeSH
2-((2-Ammonioethyl)ammonio)acetate iodide	MeSH
N-(2-Aminoethyl)glycine monosodium salt	MeSH
2-((2-Ammonioethyl)amino)acetate dihydrate	MeSH

Chemical Formula

C₄H₁₀N₂O₂

Average Mass

118.1360 Da

Monoisotopic Mass

118.07423 Da

IUPAC Name

2-[(2-aminoethyl)amino]acetic acid

Traditional Name

[(2-aminoethyl)amino]acetic acid

CAS Registry Number

Not Available

SMILES

NCCNCC(O)=O

InChI Identifier

InChI=1S/C4H10N2O2/c5-1-2-6-3-4(7)8/h6H,1-3,5H2,(H,7,8)

InChI Key

PIINGYXNCHTJTF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cyanobacterium	NPAtlas	23145061

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acids

Alternative Parents

Substituents

Alpha-amino acid
Amino acid
Carboxylic acid
Secondary aliphatic amine
Monocarboxylic acid or derivatives
Secondary amine
Carbonyl group
Primary amine
Organooxygen compound
Organonitrogen compound
Amine
Primary aliphatic amine
Organic nitrogen compound
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Organopnictogen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.3	ALOGPS
logP	-4	ChemAxon
logS	0.36	ALOGPS
pKa (Strongest Acidic)	2.17	ChemAxon
pKa (Strongest Basic)	10.06	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	75.35 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	28.73 m³·mol⁻¹	ChemAxon
Polarizability	11.91 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA027411

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

379422

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Banack SA, Metcalf JS, Jiang L, Craighead D, Ilag LL, Cox PA: Cyanobacteria produce N-(2-aminoethyl)glycine, a backbone for peptide nucleic acids which may have been the first genetic molecules for life on Earth. PLoS One. 2012;7(11):e49043. doi: 10.1371/journal.pone.0049043. Epub 2012 Nov 7. [PubMed:23145061 ]
Singh KR, Sridevi P, Singh RP: Potential applications of peptide nucleic acid in biomedical domain. Eng Rep. 2020 Jul 24:e12238. doi: 10.1002/eng2.12238. [PubMed:32838227 ]
Bhattacharyya S, Sarkar A, Dey SK, Mukherjee A: Effect of glucosamine conjugation to zinc(II) complexes of a bis-pyrazole ligand: syntheses, characterization and anticancer activity. J Inorg Biochem. 2014 Nov;140:131-42. doi: 10.1016/j.jinorgbio.2014.07.009. Epub 2014 Jul 22. [PubMed:25113858 ]
Gratz A, Gotz C, Jose J: A CE-based assay for human protein kinase CK2 activity measurement and inhibitor screening. Electrophoresis. 2010 Jan;31(4):634-40. doi: 10.1002/elps.200900514. [PubMed:20162588 ]
Ilic N, Habus I, Barkawi LS, Park S, Stefanic Z, Kojic-Prodic B, Cohen JD, Magnus V: Aminoethyl-substituted indole-3-acetic acids for the preparation of tagged and carrier-linked auxin. Bioorg Med Chem. 2005 May 2;13(9):3229-40. doi: 10.1016/j.bmc.2005.02.046. [PubMed:15809158 ]

Showing NP-Card for N-(2-aminoethyl)-glycine (NP0011252)

MOL for NP0011252 (N-(2-aminoethyl)-glycine)

3D MOL for NP0011252 (N-(2-aminoethyl)-glycine)

3D SDF for NP0011252 (N-(2-aminoethyl)-glycine)

3D-SDF for NP0011252 (N-(2-aminoethyl)-glycine)

PDB for NP0011252 (N-(2-aminoethyl)-glycine)

3D PDB for NP0011252 (N-(2-aminoethyl)-glycine)

SMILES for NP0011252 (N-(2-aminoethyl)-glycine)

INCHI for NP0011252 (N-(2-aminoethyl)-glycine)

Structure for NP0011252 (N-(2-aminoethyl)-glycine)

3D Structure for NP0011252 (N-(2-aminoethyl)-glycine)