Np mrd loader

Showing NP-Card for Neomaclafungin D (NP0011216)

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Record Information
Version2.0
Created at2021-01-05 20:59:11 UTC
Updated at2021-07-15 17:08:17 UTC
NP-MRD IDNP0011216
Secondary Accession NumbersNone
Natural Product Identification
Common NameNeomaclafungin D
Provided ByNPAtlasNPAtlas Logo
Description Neomaclafungin D is found in Actinoalloteichus.
Structure
Thumb
MOL3D MOLSDF3D SDFPDBSMILESInChI

MOL for NP0011216 (Neomaclafungin D)


  Mrv1652307012121373D          

137139  0  0  0  0            999 V2000
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M  END
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3D MOL for NP0011216 (Neomaclafungin D)

     RDKit          3D

137139  0  0  0  0  0  0  0  0999 V2000
   -8.8327    1.7655    1.0073 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for NP0011216 (Neomaclafungin D)


  Mrv1652307012121373D          

137139  0  0  0  0            999 V2000
   -8.8327    1.7655    1.0073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7231    2.4875    1.7342 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.6926    1.5456    2.3265 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.3238    0.7060    3.2283 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9127    0.8279    1.2647 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.2045   -0.7110    0.7085 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0011216

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@]1([H])[C@@]2([H])O[C@@]3(O[C@@]([H])(C([H])([H])[C@]([H])(O[H])C([H])([H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C3([H])[H])C([H])([H])[C@]1([H])OC(=O)\C([H])=C([H])/[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])C([H])([H])[C@]([H])(OC([H])([H])[H])C([H])([H])[C@]([H])(O[H])[C@]([H])(C([H])([H])[H])[C@]([H])(O[H])C([H])([H])C([H])([H])\C([H])=C(\[H])/C(/[H])=C([H])\[C@]([H])(C([H])([H])C([H])([H])[H])C([H])([H])C2([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C46H80O11/c1-9-34-15-13-11-12-14-16-38(49)32(6)39(50)26-36(54-8)27-40(51)33(7)45(53)30(4)17-22-44(52)55-43-28-46(24-23-29(3)42(57-46)25-35(48)10-2)56-41(21-19-34)37(43)20-18-31(5)47/h11-13,15,17,22,29-43,45,47-51,53H,9-10,14,16,18-21,23-28H2,1-8H3/b12-11-,15-13-,22-17-/t29-,30-,31+,32+,33-,34-,35+,36+,37+,38+,39-,40+,41-,42-,43-,45+,46-/m0/s1

> <INCHI_KEY>
KNAZAWGMTPIXBR-XMXFORSASA-N

> <FORMULA>
C46H80O11

> <MOLECULAR_WEIGHT>
809.135

> <EXACT_MASS>
808.570063396

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
137

> <JCHEM_AVERAGE_POLARIZABILITY>
92.5336338243812

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4Z,5'S,6S,6'S,7R,8S,9R,11R,13S,14R,15R,18Z,20Z,22R,25S,27R,29R)-22-ethyl-7,9,13,15-tetrahydroxy-6'-[(2R)-2-hydroxybutyl]-29-[(3R)-3-hydroxybutyl]-11-methoxy-5',6,8,14-tetramethyl-2,26-dioxaspiro[bicyclo[23.3.1]nonacosane-27,2'-oxane]-4,18,20-trien-3-one

> <ALOGPS_LOGP>
4.65

> <JCHEM_LOGP>
6.025458087666666

> <ALOGPS_LOGS>
-5.45

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.543703824194544

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.102685782375701

> <JCHEM_PKA_STRONGEST_BASIC>
-1.655322920662098

> <JCHEM_POLAR_SURFACE_AREA>
175.36999999999998

> <JCHEM_REFRACTIVITY>
226.51330000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.90e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4Z,5'S,6S,6'S,7R,8S,9R,11R,13S,14R,15R,18Z,20Z,22R,25S,27R,29R)-22-ethyl-7,9,13,15-tetrahydroxy-6'-[(2R)-2-hydroxybutyl]-29-[(3R)-3-hydroxybutyl]-11-methoxy-5',6,8,14-tetramethyl-2,26-dioxaspiro[bicyclo[23.3.1]nonacosane-27,2'-oxane]-4,18,20-trien-3-one

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for NP0011216 (Neomaclafungin D)

     RDKit          3D

137139  0  0  0  0  0  0  0  0999 V2000
   -8.8327    1.7655    1.0073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7231    2.4875    1.7342 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6926    1.5456    2.3265 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.3238    0.7060    3.2283 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9127    0.8279    1.2647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8701   -0.1167    1.7946 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2045   -0.7110    0.7085 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9388   -1.1507    1.0961 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0083   -1.5883    2.5349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3393   -2.2704    2.7615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4603   -1.2476    2.5969 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.5267   -1.9424    1.7606 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5362   -2.3641    0.2460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6139   -1.9029   -0.8707 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3799   -1.4601   -0.4008 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3613   -2.0612    0.6039 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9245   -1.2833    1.4352 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5384   -3.4891    0.7761 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6477   -4.2312   -0.3105 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4026   -3.8099   -1.4896 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7363   -5.0584   -2.2803 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6578   -3.0773   -1.2259 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2295   -3.4955   -0.0191 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6924   -3.3204   -2.2986 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4765   -2.3903   -3.5008 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0942   -3.0258   -1.7642 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2801   -3.8353   -0.6222 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2230   -1.5640   -1.4022 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6062   -1.3156   -0.9195 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9988   -2.3661   -0.0942 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0752   -3.0828   -0.5563 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7652    0.0171   -0.2187 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5177    0.5385    0.4061 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6695    0.9510   -0.6475 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8628    1.7970    1.1720 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3264    1.7878    1.6243 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0304    2.0078    2.3941 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6512    1.3717    3.4696 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5948    1.6228    2.2532 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6574    2.7656    2.5860 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8670    3.8481    1.5785 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1413    4.9585    1.5955 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7899    4.9885    2.1206 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.1100    3.3505    0.5232 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7315    4.3000   -0.4483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1307    4.7239   -0.1052 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7021    1.9976    0.6093 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3639    1.5448   -0.6829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2548    0.3820   -0.4248 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9823   -0.1695    0.8592 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3398   -0.6733   -1.4596 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8367   -0.3902   -2.8181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4771    0.7621   -3.5425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9736    0.5510   -3.7102 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6083    1.7137   -4.4378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2413   -0.6068   -4.4375 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6289    1.4032    1.7178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5062    0.9822    0.3257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3519    2.5314    0.3798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2161    3.1293    0.9612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1853    3.1288    2.5107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0179    2.2035    2.9486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1470    1.1508    3.5531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3968    1.6380    0.6653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6054    0.3383    0.5481 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for NP0011216 (Neomaclafungin D)

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0      -8.833   1.766   1.007  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.723   2.487   1.734  0.00  0.00           C+0
HETATM    3  C   UNK     0      -6.693   1.546   2.326  0.00  0.00           C+0
HETATM    4  O   UNK     0      -7.324   0.706   3.228  0.00  0.00           O+0
HETATM    5  C   UNK     0      -5.913   0.828   1.265  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.870  -0.117   1.795  0.00  0.00           C+0
HETATM    7  O   UNK     0      -4.205  -0.711   0.709  0.00  0.00           O+0
HETATM    8  C   UNK     0      -2.939  -1.151   1.096  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.008  -1.588   2.535  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.339  -2.270   2.761  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.460  -1.248   2.597  0.00  0.00           C+0
HETATM   12  C   UNK     0      -6.527  -1.942   1.761  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.536  -2.364   0.246  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.614  -1.903  -0.871  0.00  0.00           C+0
HETATM   15  O   UNK     0      -0.380  -1.460  -0.401  0.00  0.00           O+0
HETATM   16  C   UNK     0       0.361  -2.061   0.604  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.925  -1.283   1.435  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.538  -3.489   0.776  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.648  -4.231  -0.311  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.403  -3.810  -1.490  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.736  -5.058  -2.280  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.658  -3.077  -1.226  0.00  0.00           C+0
HETATM   23  O   UNK     0       3.229  -3.495  -0.019  0.00  0.00           O+0
HETATM   24  C   UNK     0       3.692  -3.320  -2.299  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.477  -2.390  -3.501  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.094  -3.026  -1.764  0.00  0.00           C+0
HETATM   27  O   UNK     0       5.280  -3.835  -0.622  0.00  0.00           O+0
HETATM   28  C   UNK     0       5.223  -1.564  -1.402  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.606  -1.316  -0.920  0.00  0.00           C+0
HETATM   30  O   UNK     0       6.999  -2.366  -0.094  0.00  0.00           O+0
HETATM   31  C   UNK     0       8.075  -3.083  -0.556  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.765   0.017  -0.219  0.00  0.00           C+0
HETATM   33  C   UNK     0       5.518   0.539   0.406  0.00  0.00           C+0
HETATM   34  O   UNK     0       4.670   0.951  -0.648  0.00  0.00           O+0
HETATM   35  C   UNK     0       5.863   1.797   1.172  0.00  0.00           C+0
HETATM   36  C   UNK     0       7.326   1.788   1.624  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.030   2.008   2.394  0.00  0.00           C+0
HETATM   38  O   UNK     0       5.651   1.372   3.470  0.00  0.00           O+0
HETATM   39  C   UNK     0       3.595   1.623   2.253  0.00  0.00           C+0
HETATM   40  C   UNK     0       2.657   2.766   2.586  0.00  0.00           C+0
HETATM   41  C   UNK     0       2.867   3.848   1.579  0.00  0.00           C+0
HETATM   42  C   UNK     0       2.141   4.958   1.595  0.00  0.00           C+0
HETATM   43  C   UNK     0       0.790   4.989   2.121  0.00  0.00           C+0
HETATM   44  C   UNK     0      -0.075   4.029   1.854  0.00  0.00           C+0
HETATM   45  C   UNK     0      -0.110   3.350   0.523  0.00  0.00           C+0
HETATM   46  C   UNK     0      -0.732   4.300  -0.448  0.00  0.00           C+0
HETATM   47  C   UNK     0      -2.131   4.724  -0.105  0.00  0.00           C+0
HETATM   48  C   UNK     0      -0.702   1.998   0.609  0.00  0.00           C+0
HETATM   49  C   UNK     0      -1.364   1.545  -0.683  0.00  0.00           C+0
HETATM   50  C   UNK     0      -2.255   0.382  -0.425  0.00  0.00           C+0
HETATM   51  O   UNK     0      -1.982  -0.170   0.859  0.00  0.00           O+0
HETATM   52  C   UNK     0      -2.340  -0.673  -1.460  0.00  0.00           C+0
HETATM   53  C   UNK     0      -1.837  -0.390  -2.818  0.00  0.00           C+0
HETATM   54  C   UNK     0      -2.477   0.762  -3.543  0.00  0.00           C+0
HETATM   55  C   UNK     0      -3.974   0.551  -3.710  0.00  0.00           C+0
HETATM   56  C   UNK     0      -4.608   1.714  -4.438  0.00  0.00           C+0
HETATM   57  O   UNK     0      -4.241  -0.607  -4.438  0.00  0.00           O+0
HETATM   58  H   UNK     0      -9.629   1.403   1.718  0.00  0.00           H+0
HETATM   59  H   UNK     0      -8.506   0.982   0.326  0.00  0.00           H+0
HETATM   60  H   UNK     0      -9.352   2.531   0.380  0.00  0.00           H+0
HETATM   61  H   UNK     0      -7.216   3.129   0.961  0.00  0.00           H+0
HETATM   62  H   UNK     0      -8.185   3.129   2.511  0.00  0.00           H+0
HETATM   63  H   UNK     0      -6.018   2.204   2.949  0.00  0.00           H+0
HETATM   64  H   UNK     0      -8.147   1.151   3.553  0.00  0.00           H+0
HETATM   65  H   UNK     0      -5.397   1.638   0.665  0.00  0.00           H+0
HETATM   66  H   UNK     0      -6.605   0.338   0.548  0.00  0.00           H+0
HETATM   67  H   UNK     0      -4.162   0.496   2.390  0.00  0.00           H+0
HETATM   68  H   UNK     0      -2.237  -2.366   2.769  0.00  0.00           H+0
HETATM   69  H   UNK     0      -2.811  -0.759   3.228  0.00  0.00           H+0
HETATM   70  H   UNK     0      -4.414  -3.073   2.005  0.00  0.00           H+0
HETATM   71  H   UNK     0      -4.384  -2.765   3.751  0.00  0.00           H+0
HETATM   72  H   UNK     0      -5.800  -0.973   3.602  0.00  0.00           H+0
HETATM   73  H   UNK     0      -7.547  -1.763   2.097  0.00  0.00           H+0
HETATM   74  H   UNK     0      -6.373  -3.064   1.754  0.00  0.00           H+0
HETATM   75  H   UNK     0      -6.433  -1.668   0.677  0.00  0.00           H+0
HETATM   76  H   UNK     0      -2.079  -3.145   0.883  0.00  0.00           H+0
HETATM   77  H   UNK     0      -3.429  -2.809  -0.233  0.00  0.00           H+0
HETATM   78  H   UNK     0      -1.572  -2.676  -1.627  0.00  0.00           H+0
HETATM   79  H   UNK     0       0.581  -3.949   1.781  0.00  0.00           H+0
HETATM   80  H   UNK     0       0.152  -5.205  -0.319  0.00  0.00           H+0
HETATM   81  H   UNK     0       0.780  -3.175  -2.184  0.00  0.00           H+0
HETATM   82  H   UNK     0       1.899  -4.840  -3.340  0.00  0.00           H+0
HETATM   83  H   UNK     0       2.533  -5.665  -1.792  0.00  0.00           H+0
HETATM   84  H   UNK     0       0.851  -5.770  -2.283  0.00  0.00           H+0
HETATM   85  H   UNK     0       2.529  -1.953  -1.229  0.00  0.00           H+0
HETATM   86  H   UNK     0       2.885  -4.340   0.311  0.00  0.00           H+0
HETATM   87  H   UNK     0       3.740  -4.325  -2.699  0.00  0.00           H+0
HETATM   88  H   UNK     0       2.800  -1.575  -3.229  0.00  0.00           H+0
HETATM   89  H   UNK     0       4.452  -2.057  -3.924  0.00  0.00           H+0
HETATM   90  H   UNK     0       2.966  -2.939  -4.338  0.00  0.00           H+0
HETATM   91  H   UNK     0       5.782  -3.339  -2.575  0.00  0.00           H+0
HETATM   92  H   UNK     0       5.687  -4.695  -0.859  0.00  0.00           H+0
HETATM   93  H   UNK     0       5.064  -0.964  -2.321  0.00  0.00           H+0
HETATM   94  H   UNK     0       4.441  -1.372  -0.637  0.00  0.00           H+0
HETATM   95  H   UNK     0       7.300  -1.360  -1.805  0.00  0.00           H+0
HETATM   96  H   UNK     0       8.989  -2.460  -0.678  0.00  0.00           H+0
HETATM   97  H   UNK     0       8.326  -3.824   0.244  0.00  0.00           H+0
HETATM   98  H   UNK     0       7.871  -3.676  -1.468  0.00  0.00           H+0
HETATM   99  H   UNK     0       7.592  -0.123   0.522  0.00  0.00           H+0
HETATM  100  H   UNK     0       7.089   0.756  -0.993  0.00  0.00           H+0
HETATM  101  H   UNK     0       5.013  -0.143   1.087  0.00  0.00           H+0
HETATM  102  H   UNK     0       5.172   1.585  -1.215  0.00  0.00           H+0
HETATM  103  H   UNK     0       5.765   2.698   0.524  0.00  0.00           H+0
HETATM  104  H   UNK     0       7.446   2.742   2.205  0.00  0.00           H+0
HETATM  105  H   UNK     0       7.527   0.973   2.330  0.00  0.00           H+0
HETATM  106  H   UNK     0       8.011   1.854   0.771  0.00  0.00           H+0
HETATM  107  H   UNK     0       5.051   3.106   2.638  0.00  0.00           H+0
HETATM  108  H   UNK     0       5.013   1.399   4.229  0.00  0.00           H+0
HETATM  109  H   UNK     0       3.356   1.174   1.266  0.00  0.00           H+0
HETATM  110  H   UNK     0       3.393   0.816   3.017  0.00  0.00           H+0
HETATM  111  H   UNK     0       1.618   2.441   2.658  0.00  0.00           H+0
HETATM  112  H   UNK     0       3.022   3.162   3.569  0.00  0.00           H+0
HETATM  113  H   UNK     0       3.619   3.729   0.823  0.00  0.00           H+0
HETATM  114  H   UNK     0       2.605   5.854   1.203  0.00  0.00           H+0
HETATM  115  H   UNK     0       0.459   5.807   2.741  0.00  0.00           H+0
HETATM  116  H   UNK     0      -0.769   3.736   2.626  0.00  0.00           H+0
HETATM  117  H   UNK     0       0.960   3.229   0.181  0.00  0.00           H+0
HETATM  118  H   UNK     0      -0.660   3.911  -1.505  0.00  0.00           H+0
HETATM  119  H   UNK     0      -0.109   5.221  -0.454  0.00  0.00           H+0
HETATM  120  H   UNK     0      -2.175   5.790   0.267  0.00  0.00           H+0
HETATM  121  H   UNK     0      -2.824   4.698  -0.964  0.00  0.00           H+0
HETATM  122  H   UNK     0      -2.520   4.102   0.722  0.00  0.00           H+0
HETATM  123  H   UNK     0      -1.520   2.021   1.375  0.00  0.00           H+0
HETATM  124  H   UNK     0       0.037   1.260   0.985  0.00  0.00           H+0
HETATM  125  H   UNK     0      -1.973   2.448  -0.988  0.00  0.00           H+0
HETATM  126  H   UNK     0      -0.657   1.349  -1.478  0.00  0.00           H+0
HETATM  127  H   UNK     0      -3.305   0.784  -0.292  0.00  0.00           H+0
HETATM  128  H   UNK     0      -3.400  -1.063  -1.590  0.00  0.00           H+0
HETATM  129  H   UNK     0      -2.089  -1.303  -3.444  0.00  0.00           H+0
HETATM  130  H   UNK     0      -0.725  -0.344  -2.892  0.00  0.00           H+0
HETATM  131  H   UNK     0      -2.100   0.790  -4.620  0.00  0.00           H+0
HETATM  132  H   UNK     0      -2.282   1.747  -3.150  0.00  0.00           H+0
HETATM  133  H   UNK     0      -4.404   0.378  -2.702  0.00  0.00           H+0
HETATM  134  H   UNK     0      -5.561   2.037  -3.964  0.00  0.00           H+0
HETATM  135  H   UNK     0      -3.942   2.610  -4.412  0.00  0.00           H+0
HETATM  136  H   UNK     0      -4.735   1.439  -5.486  0.00  0.00           H+0
HETATM  137  H   UNK     0      -3.961  -0.471  -5.386  0.00  0.00           H+0
CONECT    1    2   58   59   60                                             
CONECT    2    1    3   61   62                                             
CONECT    3    2    4    5   63                                             
CONECT    4    3   64                                                       
CONECT    5    3    6   65   66                                             
CONECT    6    5    7   11   67                                             
CONECT    7    6    8                                                       
CONECT    8    7    9   13   51                                             
CONECT    9    8   10   68   69                                             
CONECT   10    9   11   70   71                                             
CONECT   11   10   12    6   72                                             
CONECT   12   11   73   74   75                                             
CONECT   13    8   14   76   77                                             
CONECT   14   13   15   52   78                                             
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   79                                                  
CONECT   19   18   20   80                                                  
CONECT   20   19   21   22   81                                             
CONECT   21   20   82   83   84                                             
CONECT   22   20   23   24   85                                             
CONECT   23   22   86                                                       
CONECT   24   22   25   26   87                                             
CONECT   25   24   88   89   90                                             
CONECT   26   24   27   28   91                                             
CONECT   27   26   92                                                       
CONECT   28   26   29   93   94                                             
CONECT   29   28   30   32   95                                             
CONECT   30   29   31                                                       
CONECT   31   30   96   97   98                                             
CONECT   32   29   33   99  100                                             
CONECT   33   32   34   35  101                                             
CONECT   34   33  102                                                       
CONECT   35   33   36   37  103                                             
CONECT   36   35  104  105  106                                             
CONECT   37   35   38   39  107                                             
CONECT   38   37  108                                                       
CONECT   39   37   40  109  110                                             
CONECT   40   39   41  111  112                                             
CONECT   41   40   42  113                                                  
CONECT   42   41   43  114                                                  
CONECT   43   42   44  115                                                  
CONECT   44   43   45  116                                                  
CONECT   45   44   46   48  117                                             
CONECT   46   45   47  118  119                                             
CONECT   47   46  120  121  122                                             
CONECT   48   45   49  123  124                                             
CONECT   49   48   50  125  126                                             
CONECT   50   49   51   52  127                                             
CONECT   51   50    8                                                       
CONECT   52   50   53   14  128                                             
CONECT   53   52   54  129  130                                             
CONECT   54   53   55  131  132                                             
CONECT   55   54   56   57  133                                             
CONECT   56   55  134  135  136                                             
CONECT   57   55  137                                                       
CONECT   58    1                                                            
CONECT   59    1                                                            
CONECT   60    1                                                            
CONECT   61    2                                                            
CONECT   62    2                                                            
CONECT   63    3                                                            
CONECT   64    4                                                            
CONECT   65    5                                                            
CONECT   66    5                                                            
CONECT   67    6                                                            
CONECT   68    9                                                            
CONECT   69    9                                                            
CONECT   70   10                                                            
CONECT   71   10                                                            
CONECT   72   11                                                            
CONECT   73   12                                                            
CONECT   74   12                                                            
CONECT   75   12                                                            
CONECT   76   13                                                            
CONECT   77   13                                                            
CONECT   78   14                                                            
CONECT   79   18                                                            
CONECT   80   19                                                            
CONECT   81   20                                                            
CONECT   82   21                                                            
CONECT   83   21                                                            
CONECT   84   21                                                            
CONECT   85   22                                                            
CONECT   86   23                                                            
CONECT   87   24                                                            
CONECT   88   25                                                            
CONECT   89   25                                                            
CONECT   90   25                                                            
CONECT   91   26                                                            
CONECT   92   27                                                            
CONECT   93   28                                                            
CONECT   94   28                                                            
CONECT   95   29                                                            
CONECT   96   31                                                            
CONECT   97   31                                                            
CONECT   98   31                                                            
CONECT   99   32                                                            
CONECT  100   32                                                            
CONECT  101   33                                                            
CONECT  102   34                                                            
CONECT  103   35                                                            
CONECT  104   36                                                            
CONECT  105   36                                                            
CONECT  106   36                                                            
CONECT  107   37                                                            
CONECT  108   38                                                            
CONECT  109   39                                                            
CONECT  110   39                                                            
CONECT  111   40                                                            
CONECT  112   40                                                            
CONECT  113   41                                                            
CONECT  114   42                                                            
CONECT  115   43                                                            
CONECT  116   44                                                            
CONECT  117   45                                                            
CONECT  118   46                                                            
CONECT  119   46                                                            
CONECT  120   47                                                            
CONECT  121   47                                                            
CONECT  122   47                                                            
CONECT  123   48                                                            
CONECT  124   48                                                            
CONECT  125   49                                                            
CONECT  126   49                                                            
CONECT  127   50                                                            
CONECT  128   52                                                            
CONECT  129   53                                                            
CONECT  130   53                                                            
CONECT  131   54                                                            
CONECT  132   54                                                            
CONECT  133   55                                                            
CONECT  134   56                                                            
CONECT  135   56                                                            
CONECT  136   56                                                            
CONECT  137   57                                                            
MASTER        0    0    0    0    0    0    0    0  137    0  278    0
END
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3D PDB for NP0011216 (Neomaclafungin D)

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SMILES for NP0011216 (Neomaclafungin D)
[H]O[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[C@]1([H])[C@@]2([H])O[C@@]3(O[C@@]([H])(C([H])([H])[C@]([H])(O[H])C([H])([H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C3([H])[H])C([H])([H])[C@]1([H])OC(=O)\C([H])=C([H])/[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])C([H])([H])[C@]([H])(OC([H])([H])[H])C([H])([H])[C@]([H])(O[H])[C@]([H])(C([H])([H])[H])[C@]([H])(O[H])C([H])([H])C([H])([H])\C([H])=C(\[H])/C(/[H])=C([H])\[C@]([H])(C([H])([H])C([H])([H])[H])C([H])([H])C2([H])[H]
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INCHI for NP0011216 (Neomaclafungin D)
InChI=1S/C46H80O11/c1-9-34-15-13-11-12-14-16-38(49)32(6)39(50)26-36(54-8)27-40(51)33(7)45(53)30(4)17-22-44(52)55-43-28-46(24-23-29(3)42(57-46)25-35(48)10-2)56-41(21-19-34)37(43)20-18-31(5)47/h11-13,15,17,22,29-43,45,47-51,53H,9-10,14,16,18-21,23-28H2,1-8H3/b12-11-,15-13-,22-17-/t29-,30-,31+,32+,33-,34-,35+,36+,37+,38+,39-,40+,41-,42-,43-,45+,46-/m0/s1
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View in JSmolView NMR Assignments
SynonymsNot Available
Chemical FormulaC46H80O11
Average Mass809.1350 Da
Monoisotopic Mass808.57006 Da
IUPAC Name(1S,4Z,5'S,6S,6'S,7R,8S,9R,11R,13S,14R,15R,18Z,20Z,22R,25S,27R,29R)-22-ethyl-7,9,13,15-tetrahydroxy-6'-[(2R)-2-hydroxybutyl]-29-[(3R)-3-hydroxybutyl]-11-methoxy-5',6,8,14-tetramethyl-2,26-dioxaspiro[bicyclo[23.3.1]nonacosane-27,2'-oxane]-4,18,20-trien-3-one
Traditional Name(1S,4Z,5'S,6S,6'S,7R,8S,9R,11R,13S,14R,15R,18Z,20Z,22R,25S,27R,29R)-22-ethyl-7,9,13,15-tetrahydroxy-6'-[(2R)-2-hydroxybutyl]-29-[(3R)-3-hydroxybutyl]-11-methoxy-5',6,8,14-tetramethyl-2,26-dioxaspiro[bicyclo[23.3.1]nonacosane-27,2'-oxane]-4,18,20-trien-3-one
CAS Registry NumberNot Available
SMILES
CC[C@@H](O)C[C@@H]1O[C@@]2(CC[C@@H]1C)C[C@@H]1OC(=O)\C=C/[C@H](C)[C@@H](O)[C@@H](C)[C@H](O)C[C@@H](C[C@H](O)[C@H](C)[C@H](O)CC\C=C/C=C\[C@H](CC)CC[C@H](O2)[C@H]1CCC(C)O)OC
InChI Identifier
InChI=1S/C46H80O11/c1-9-34-15-13-11-12-14-16-38(49)32(6)39(50)26-36(54-8)27-40(51)33(7)45(53)30(4)17-22-44(52)55-43-28-46(24-23-29(3)42(57-46)25-35(48)10-2)56-41(21-19-34)37(43)20-18-31(5)47/h11-13,15,17,22,29-43,45,47-51,53H,9-10,14,16,18-21,23-28H2,1-8H3/b12-11-,15-13-,22-17-/t29-,30-,31?,32+,33-,34-,35+,36+,37+,38+,39-,40+,41-,42-,43-,45+,46-/m0/s1
InChI KeyKNAZAWGMTPIXBR-XMXFORSASA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
ActinoalloteichusNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.65ALOGPS
logP6.03ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)14.1ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area175.37 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity226.51 m³·mol⁻¹ChemAxon
Polarizability92.53 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA014880  
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78438059  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References