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Record Information
Version2.0
Created at2021-01-05 20:53:09 UTC
Updated at2021-07-15 17:07:54 UTC
NP-MRD IDNP0011076
Secondary Accession NumbersNone
Natural Product Identification
Common NameLomaiviticin E
Provided ByNPAtlasNPAtlas Logo
Description(1R,2S,3R)-11-(diazyn-1-ium-1-yl)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-3-[(1R,2S,3S)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-4,5,10-trihydroxy-6,9-dioxo-1H,2H,3H,6H,9H-cyclohexa[b]fluoren-3-yl]-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-4,9-dioxo-1H,2H,3H,4H,9H-cyclohexa[b]fluoren-6-olate belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. Lomaiviticin E is found in Salinispora. Based on a literature review very few articles have been published on (1R,2S,3R)-11-(diazyn-1-ium-1-yl)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-3-[(1R,2S,3S)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-4,5,10-trihydroxy-6,9-dioxo-1H,2H,3H,6H,9H-cyclohexa[b]fluoren-3-yl]-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-4,9-dioxo-1H,2H,3H,4H,9H-cyclohexa[b]fluoren-6-olate.
Structure
Thumb
Synonyms
ValueSource
(1R,2S,3R)-11-(Diazyn-1-ium-1-yl)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-3-[(1R,2S,3S)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-4,5,10-trihydroxy-6,9-dioxo-1H,2H,3H,6H,9H-cyclohexa[b]fluoren-3-yl]-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-4,9-dioxo-1H,2H,3H,4H,9H-cyclohexa[b]fluoren-6-olic acidGenerator
Chemical FormulaC70H86N4O24
Average Mass1367.4620 Da
Monoisotopic Mass1366.56320 Da
IUPAC Name(1R,2S,3R)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-3-[(1R,2S,3S)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-4,5,10-trihydroxy-6,9-dioxo-1H,2H,3H,6H,9H-cyclohexa[b]fluoren-3-yl]-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-11-(-lambda4,-lambda2-diazynylidene)-1H,2H,3H,4H,6H,9H,11H-cyclohexa[b]fluorene-4,6,9-trione
Traditional Name(1R,2S,3R)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-3-[(1R,2S,3S)-2-{[(2S,4S,5S,6S)-4,5-dimethoxy-6-methyloxan-2-yl]oxy}-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-4,5,10-trihydroxy-6,9-dioxo-1H,3H-cyclohexa[b]fluoren-3-yl]-1-{[(2R,4S,5R,6S)-5-(dimethylamino)-4-hydroxy-6-methyloxan-2-yl]oxy}-2-ethyl-5,10-dihydroxy-11-(-lambda4,-lambda2-diazynylidene)-1H,3H-cyclohexa[b]fluorene-4,6,9-trione
CAS Registry NumberNot Available
SMILES
CC[C@@]1(O[C@H]2C[C@H](OC)[C@@H](OC)[C@H](C)O2)[C@H](O[C@@H]2C[C@H](O)[C@H]([C@H](C)O2)N(C)C)C2=CC3=C(C2=C(O)[C@@H]1[C@H]1C(=O)C2=C([C@@H](O[C@@H]4C[C@H](O)[C@H]([C@H](C)O4)N(C)C)[C@@]1(CC)O[C@H]1C[C@H](OC)[C@@H](OC)[C@H](C)O1)C(=[N+]=[N-])C1=C2C(O)=C2C(=O)C=CC(=O)C2=C1O)C(O)=C1C(=O)C=CC(=O)C1=C3O
InChI Identifier
InChI=1S/C70H86N4O24/c1-15-69(97-42-24-38(87-11)65(89-13)28(5)93-42)54(63(85)45-31(67(69)95-40-22-36(79)57(73(7)8)26(3)91-40)21-30-44(45)60(82)47-33(76)18-17-32(75)46(47)59(30)81)55-64(86)51-50-52(62(84)49-35(78)20-19-34(77)48(49)61(50)83)56(72-71)53(51)68(96-41-23-37(80)58(74(9)10)27(4)92-41)70(55,16-2)98-43-25-39(88-12)66(90-14)29(6)94-43/h17-21,26-29,36-43,54-55,57-58,65-68,79-85H,15-16,22-25H2,1-14H3/t26-,27-,28-,29-,36-,37-,38-,39-,40+,41+,42-,43-,54-,55-,57-,58-,65-,66-,67+,68+,69-,70-/m0/s1
InChI KeyUUFARPZDPLRTPW-YHYZUSIDSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
SalinisporaNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentAminoglycosides
Alternative Parents
Substituents
  • Aminoglycoside core
  • Naphthoquinone
  • O-glycosyl compound
  • 1-naphthol
  • Glycosyl compound
  • Naphthalene
  • Indene
  • Aryl alkyl ketone
  • Aryl ketone
  • Quinone
  • Hydroquinone
  • Benzenoid
  • Oxane
  • Monosaccharide
  • Vinylogous acid
  • Diazo compound
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary alcohol
  • Ketone
  • 1,2-aminoalcohol
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Ether
  • Enol
  • Dialkyl ether
  • Acetal
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organic zwitterion
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.3ALOGPS
logP3.13ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)6.18ChemAxon
pKa (Strongest Basic)8.43ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count27ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area361.27 ŲChemAxon
Rotatable Bond Count17ChemAxon
Refractivity349.37 m³·mol⁻¹ChemAxon
Polarizability143.4 ųChemAxon
Number of Rings12ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA008789
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78439702
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound136230223
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References