NP-MRD: Showing NP-Card for Bengamide F' (NP0010889)

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Record Information

Version

2.0

Created at

2021-01-05 20:41:46 UTC

Updated at

2021-07-15 17:07:21 UTC

NP-MRD ID

NP0010889

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bengamide F'

Provided By

NPAtlas

Description

(2R,3R,4S,5R,6E)-3,4,5-trihydroxy-2-methoxy-8-methyl-N-[(3S)-1-methyl-2-oxoazepan-3-yl]dec-6-enimidic acid belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. Bengamide F' is found in Myxococcus virescens. Based on a literature review very few articles have been published on (2R,3R,4S,5R,6E)-3,4,5-trihydroxy-2-methoxy-8-methyl-N-[(3S)-1-methyl-2-oxoazepan-3-yl]dec-6-enimidic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242107423D          

 61 61  0  0  0  0            999 V2000
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    6.4842   -0.6145    0.9814 C   0  0  2  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242107423D          

 61 61  0  0  0  0            999 V2000
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    3.8818   -1.0492    0.2369 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.2811   -1.2341    1.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
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 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
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 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
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 24 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 19  1  0  0  0  0
  1 28  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
  2 31  1  0  0  0  0
  2 32  1  0  0  0  0
  3 33  1  6  0  0  0
  4 34  1  0  0  0  0
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 15 46  1  0  0  0  0
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 22 56  1  0  0  0  0
 23 57  1  0  0  0  0
 23 58  1  0  0  0  0
 25 59  1  0  0  0  0
 25 60  1  0  0  0  0
 25 61  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0010889

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]([H])(C(\[H])=C(/[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@@]([H])(OC([H])([H])[H])C(=O)N([H])[C@]1([H])C(=O)N(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C19H34N2O6/c1-5-12(2)9-10-14(22)15(23)16(24)17(27-4)18(25)20-13-8-6-7-11-21(3)19(13)26/h9-10,12-17,22-24H,5-8,11H2,1-4H3,(H,20,25)/b10-9+/t12-,13-,14+,15-,16+,17+/m0/s1

> <INCHI_KEY>
GCWWFKMAAAJKFO-DZBLVERUSA-N

> <FORMULA>
C19H34N2O6

> <MOLECULAR_WEIGHT>
386.489

> <EXACT_MASS>
386.241686823

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
42.60412515064707

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3R,4S,5R,6E,8S)-3,4,5-trihydroxy-2-methoxy-8-methyl-N-[(3S)-1-methyl-2-oxoazepan-3-yl]dec-6-enamide

> <ALOGPS_LOGP>
0.66

> <JCHEM_LOGP>
-0.1850258533333336

> <ALOGPS_LOGS>
-1.76

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.90576942393903

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.163869420954397

> <JCHEM_PKA_STRONGEST_BASIC>
-3.343727818216622

> <JCHEM_POLAR_SURFACE_AREA>
119.33000000000001

> <JCHEM_REFRACTIVITY>
101.6231

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.72e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4S,5R,6E,8S)-3,4,5-trihydroxy-2-methoxy-8-methyl-N-[(3S)-1-methyl-2-oxoazepan-3-yl]dec-6-enamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 61 61  0  0  0  0  0  0  0  0999 V2000
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  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
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 13 14  1  0
 14 15  1  0
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 16 17  2  0
 16 18  1  0
 18 19  1  0
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 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  2  0
 26 19  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  6
  4 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  1
  8 40  1  0
  9 41  1  1
 10 42  1  0
 11 43  1  1
 12 44  1  0
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 15 46  1  0
 15 47  1  0
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 23 57  1  0
 23 58  1  0
 25 59  1  0
 25 60  1  0
 25 61  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       7.948  -0.916   1.061  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.484  -0.615   0.981  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.968  -0.581  -0.446  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.662   0.463  -1.260  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.483  -0.351  -0.335  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.946   0.699  -0.936  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.504   1.029  -0.898  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.075   1.211  -2.208  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.745  -0.006  -0.154  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.801  -1.270  -0.721  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.317   0.379   0.135  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.492   0.396  -0.964  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.322  -0.463   1.218  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.501  -0.505   2.351  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.970  -1.731   2.688  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.652   0.081   1.546  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.866   0.520   2.694  0.00  0.00           O+0
HETATM   18  N   UNK     0      -2.699   0.128   0.619  0.00  0.00           N+0
HETATM   19  C   UNK     0      -4.018   0.660   0.900  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.349   1.865   0.098  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.565   1.567  -1.360  0.00  0.00           C+0
HETATM   22  C   UNK     0      -6.047   1.321  -1.634  0.00  0.00           C+0
HETATM   23  C   UNK     0      -6.306  -0.143  -1.400  0.00  0.00           C+0
HETATM   24  N   UNK     0      -6.159  -0.553  -0.042  0.00  0.00           N+0
HETATM   25  C   UNK     0      -7.298  -1.217   0.538  0.00  0.00           C+0
HETATM   26  C   UNK     0      -5.050  -0.400   0.819  0.00  0.00           C+0
HETATM   27  O   UNK     0      -4.894  -1.328   1.685  0.00  0.00           O+0
HETATM   28  H   UNK     0       8.067  -1.807   1.715  0.00  0.00           H+0
HETATM   29  H   UNK     0       8.493  -0.089   1.515  0.00  0.00           H+0
HETATM   30  H   UNK     0       8.337  -1.212   0.066  0.00  0.00           H+0
HETATM   31  H   UNK     0       6.294   0.349   1.496  0.00  0.00           H+0
HETATM   32  H   UNK     0       5.865  -1.375   1.510  0.00  0.00           H+0
HETATM   33  H   UNK     0       6.104  -1.548  -0.932  0.00  0.00           H+0
HETATM   34  H   UNK     0       6.296   0.476  -2.288  0.00  0.00           H+0
HETATM   35  H   UNK     0       7.733   0.164  -1.315  0.00  0.00           H+0
HETATM   36  H   UNK     0       6.560   1.498  -0.852  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.882  -1.049   0.237  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.641   1.353  -1.494  0.00  0.00           H+0
HETATM   39  H   UNK     0       2.389   2.050  -0.422  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.428   1.958  -2.299  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.232  -0.086   0.861  0.00  0.00           H+0
HETATM   42  H   UNK     0       0.927  -1.603  -1.017  0.00  0.00           H+0
HETATM   43  H   UNK     0       0.294   1.438   0.548  0.00  0.00           H+0
HETATM   44  H   UNK     0       0.037   0.086  -1.753  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.368  -1.500   0.840  0.00  0.00           H+0
HETATM   46  H   UNK     0       1.571  -2.147   1.857  0.00  0.00           H+0
HETATM   47  H   UNK     0       1.689  -1.610   3.536  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.194  -2.487   2.917  0.00  0.00           H+0
HETATM   49  H   UNK     0      -2.566  -0.240  -0.339  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.991   0.993   1.980  0.00  0.00           H+0
HETATM   51  H   UNK     0      -3.606   2.657   0.274  0.00  0.00           H+0
HETATM   52  H   UNK     0      -5.328   2.260   0.483  0.00  0.00           H+0
HETATM   53  H   UNK     0      -4.031   0.644  -1.650  0.00  0.00           H+0
HETATM   54  H   UNK     0      -4.165   2.385  -1.971  0.00  0.00           H+0
HETATM   55  H   UNK     0      -6.192   1.496  -2.719  0.00  0.00           H+0
HETATM   56  H   UNK     0      -6.680   1.974  -1.000  0.00  0.00           H+0
HETATM   57  H   UNK     0      -7.341  -0.370  -1.771  0.00  0.00           H+0
HETATM   58  H   UNK     0      -5.621  -0.696  -2.101  0.00  0.00           H+0
HETATM   59  H   UNK     0      -7.336  -2.295   0.218  0.00  0.00           H+0
HETATM   60  H   UNK     0      -8.215  -0.676   0.212  0.00  0.00           H+0
HETATM   61  H   UNK     0      -7.281  -1.234   1.649  0.00  0.00           H+0
CONECT    1    2   28   29   30                                             
CONECT    2    1    3   31   32                                             
CONECT    3    2    4    5   33                                             
CONECT    4    3   34   35   36                                             
CONECT    5    3    6   37                                                  
CONECT    6    5    7   38                                                  
CONECT    7    6    8    9   39                                             
CONECT    8    7   40                                                       
CONECT    9    7   10   11   41                                             
CONECT   10    9   42                                                       
CONECT   11    9   12   13   43                                             
CONECT   12   11   44                                                       
CONECT   13   11   14   16   45                                             
CONECT   14   13   15                                                       
CONECT   15   14   46   47   48                                             
CONECT   16   13   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   49                                                  
CONECT   19   18   20   26   50                                             
CONECT   20   19   21   51   52                                             
CONECT   21   20   22   53   54                                             
CONECT   22   21   23   55   56                                             
CONECT   23   22   24   57   58                                             
CONECT   24   23   25   26                                                  
CONECT   25   24   59   60   61                                             
CONECT   26   24   27   19                                                  
CONECT   27   26                                                            
CONECT   28    1                                                            
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    2                                                            
CONECT   32    2                                                            
CONECT   33    3                                                            
CONECT   34    4                                                            
CONECT   35    4                                                            
CONECT   36    4                                                            
CONECT   37    5                                                            
CONECT   38    6                                                            
CONECT   39    7                                                            
CONECT   40    8                                                            
CONECT   41    9                                                            
CONECT   42   10                                                            
CONECT   43   11                                                            
CONECT   44   12                                                            
CONECT   45   13                                                            
CONECT   46   15                                                            
CONECT   47   15                                                            
CONECT   48   15                                                            
CONECT   49   18                                                            
CONECT   50   19                                                            
CONECT   51   20                                                            
CONECT   52   20                                                            
CONECT   53   21                                                            
CONECT   54   21                                                            
CONECT   55   22                                                            
CONECT   56   22                                                            
CONECT   57   23                                                            
CONECT   58   23                                                            
CONECT   59   25                                                            
CONECT   60   25                                                            
CONECT   61   25                                                            
MASTER        0    0    0    0    0    0    0    0   61    0  122    0
END

RDKit          3D

61 61  0  0  0  0  0  0  0  0999 V2000
    7.9484   -0.9159    1.0613 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4842   -0.6145    0.9814 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9680   -0.5812   -0.4462 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.6622    0.4630   -1.2605 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4830   -0.3507   -0.3345 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9464    0.6987   -0.9356 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5042    1.0293   -0.8976 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0750    1.2110   -2.2079 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7452   -0.0056   -0.1544 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8009   -1.2705   -0.7208 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3166    0.3788    0.1352 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4923    0.3962   -0.9639 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3216   -0.4629    1.2181 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5006   -0.5049    2.3508 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9696   -1.7307    2.6881 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6515    0.0812    1.5455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8658    0.5199    2.6938 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6994    0.1284    0.6186 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0176    0.6602    0.8999 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3489    1.8650    0.0984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5647    1.5673   -1.3596 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0468    1.3210   -1.6343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3055   -0.1425   -1.4000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1590   -0.5534   -0.0421 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2975   -1.2167    0.5376 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0496   -0.4003    0.8193 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8945   -1.3283    1.6848 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0672   -1.8070    1.7148 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4927   -0.0885    1.5154 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3369   -1.2120    0.0657 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2942    0.3489    1.4961 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8651   -1.3746    1.5100 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1044   -1.5475   -0.9320 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2959    0.4755   -2.2875 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7333    0.1640   -1.3152 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5600    1.4975   -0.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8818   -1.0492    0.2369 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6414    1.3533   -1.4945 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3885    2.0504   -0.4224 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4276    1.9584   -2.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2317   -0.0864    0.8613 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9274   -1.6034   -1.0167 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2938    1.4381    0.5476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0370    0.0855   -1.7526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3677   -1.5003    0.8395 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5708   -2.1474    1.8566 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6890   -1.6101    3.5363 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1943   -2.4872    2.9168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5664   -0.2397   -0.3386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9913    0.9931    1.9796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6064    2.6574    0.2740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3283    2.2598    0.4826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0311    0.6444   -1.6497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1654    2.3853   -1.9712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1923    1.4960   -2.7191 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6799    1.9742   -1.0003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3413   -0.3699   -1.7714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6212   -0.6956   -2.1009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3356   -2.2946    0.2183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2146   -0.6757    0.2120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2811   -1.2341    1.6489 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  2  0
 26 19  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  6
  4 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  1
  8 40  1  0
  9 41  1  1
 10 42  1  0
 11 43  1  1
 12 44  1  0
 13 45  1  6
 15 46  1  0
 15 47  1  0
 15 48  1  0
 18 49  1  0
 19 50  1  1
 20 51  1  0
 20 52  1  0
 21 53  1  0
 21 54  1  0
 22 55  1  0
 22 56  1  0
 23 57  1  0
 23 58  1  0
 25 59  1  0
 25 60  1  0
 25 61  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(2R,3R,4S,5R,6E)-3,4,5-Trihydroxy-2-methoxy-8-methyl-N-[(3S)-1-methyl-2-oxoazepan-3-yl]dec-6-enimidate	Generator

Chemical Formula

C₁₉H₃₄N₂O₆

Average Mass

386.4890 Da

Monoisotopic Mass

386.24169 Da

IUPAC Name

(2R,3R,4S,5R,6E,8S)-3,4,5-trihydroxy-2-methoxy-8-methyl-N-[(3S)-1-methyl-2-oxoazepan-3-yl]dec-6-enamide

Traditional Name

(2R,3R,4S,5R,6E,8S)-3,4,5-trihydroxy-2-methoxy-8-methyl-N-[(3S)-1-methyl-2-oxoazepan-3-yl]dec-6-enamide

CAS Registry Number

Not Available

SMILES

CCC(C)\C=C\[C@@H](O)[C@H](O)[C@@H](O)[C@@H](OC)C(=O)N[C@H]1CCCCN(C)C1=O

InChI Identifier

InChI=1S/C19H34N2O6/c1-5-12(2)9-10-14(22)15(23)16(24)17(27-4)18(25)20-13-8-6-7-11-21(3)19(13)26/h9-10,12-17,22-24H,5-8,11H2,1-4H3,(H,20,25)/b10-9+/t12?,13-,14+,15-,16+,17+/m0/s1

InChI Key

GCWWFKMAAAJKFO-DZBLVERUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Myxococcus virescens	NPAtlas	22705020

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids and derivatives

Alternative Parents

Substituents

N-acyl-alpha amino acid or derivatives
Caprolactam
Azepane
Fatty amide
Fatty acyl
Monosaccharide
N-acyl-amine
Tertiary carboxylic acid amide
Carboxamide group
Lactam
Secondary carboxylic acid amide
Secondary alcohol
Dialkyl ether
Ether
Azacycle
Organoheterocyclic compound
Polyol
Hydrocarbon derivative
Alcohol
Organic oxide
Organic nitrogen compound
Organic oxygen compound
Carbonyl group
Organooxygen compound
Organonitrogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.66	ALOGPS
logP	-0.19	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	12.16	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	119.33 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	101.62 m³·mol⁻¹	ChemAxon
Polarizability	42.6 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA005634

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9558520

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11383607

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Bengamide F' (NP0010889)

MOL for NP0010889 (Bengamide F')

3D MOL for NP0010889 (Bengamide F')

3D SDF for NP0010889 (Bengamide F')

3D-SDF for NP0010889 (Bengamide F')

PDB for NP0010889 (Bengamide F')

3D PDB for NP0010889 (Bengamide F')

SMILES for NP0010889 (Bengamide F')

INCHI for NP0010889 (Bengamide F')

Structure for NP0010889 (Bengamide F')

3D Structure for NP0010889 (Bengamide F')