NP-MRD: Showing NP-Card for Spiroindimicin A (NP0010868)

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Record Information

Version

1.0

Created at

2021-01-05 20:40:57 UTC

Updated at

2021-07-15 17:07:18 UTC

NP-MRD ID

NP0010868

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Spiroindimicin A

Provided By

NPAtlas

Description

Spiroindimicin A is found in Streptomyces. It was first documented in 2012 (PMID: 22694269). Based on a literature review very few articles have been published on 3',5'-dimethyl (3S)-5,9'-dichloro-4',13'-diazaspiro[indole-3,7'-tetracyclo[6.6.1.0²,⁶.0¹²,¹⁵]Pentadecane]-1'(14'),2',5',8',10',12'(15')-hexaene-3',5'-dicarboxylate.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242107413D          

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     RDKit          3D

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  Mrv1652306242107413D          

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 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  1  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  2  0  0  0  0
 13  5  2  0  0  0  0
 23 14  1  0  0  0  0
 33 24  1  0  0  0  0
 24 12  1  0  0  0  0
 33 27  1  0  0  0  0
 23 17  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  6 37  1  0  0  0  0
 11 38  1  0  0  0  0
 11 39  1  0  0  0  0
 11 40  1  0  0  0  0
 15 41  1  0  0  0  0
 16 42  1  0  0  0  0
 18 43  1  0  0  0  0
 19 44  1  0  0  0  0
 25 45  1  0  0  0  0
 28 46  1  0  0  0  0
 29 47  1  0  0  0  0
 32 48  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0010868

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N1C([H])=C2C3=C(N([H])C(C(=O)OC([H])([H])[H])=C3[C@]3(C([H])=NC4=C([H])C([H])=C(Cl)C([H])=C34)C3=C2C1=C([H])C([H])=C3Cl)C(=O)OC([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C24H15Cl2N3O4/c1-32-22(30)20-17-11-8-27-15-6-4-13(26)18(16(11)15)24(19(17)21(29-20)23(31)33-2)9-28-14-5-3-10(25)7-12(14)24/h3-9,27,29H,1-2H3/t24-/m0/s1

> <INCHI_KEY>
PIYWZXUZYMFZSK-DEOSSOPVSA-N

> <FORMULA>
C24H15Cl2N3O4

> <MOLECULAR_WEIGHT>
480.3

> <EXACT_MASS>
479.0439614

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
47.10852231710771

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3',5'-dimethyl (3S)-5,9'-dichloro-4',13'-diazaspiro[indole-3,7'-tetracyclo[6.6.1.0^{2,6}.0^{12,15}]pentadecane]-1'(14'),2',5',8',10',12'(15')-hexaene-3',5'-dicarboxylate

> <ALOGPS_LOGP>
4.96

> <JCHEM_LOGP>
4.915170310333332

> <ALOGPS_LOGS>
-6.23

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.403502023882936

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.8491002887854515

> <JCHEM_PKA_STRONGEST_BASIC>
3.75903529496321

> <JCHEM_POLAR_SURFACE_AREA>
96.54

> <JCHEM_REFRACTIVITY>
127.61010000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.81e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3',5'-dimethyl (3S)-5,9'-dichloro-4',13'-diazaspiro[indole-3,7'-tetracyclo[6.6.1.0^{2,6}.0^{12,15}]pentadecane]-1'(14'),2',5',8',10',12'(15')-hexaene-3',5'-dicarboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 48 53  0  0  0  0  0  0  0  0999 V2000
    5.8924   -0.4554   -0.9206 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5010   -0.5513   -0.7066 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8320    0.4002   -0.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5772    1.4008    0.3753 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4356    0.5395    0.3031 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9138    1.5830    0.9809 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5760    1.4279    1.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2542    2.3917    1.8464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4411    2.3990    2.0798 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4036    3.5666    2.3743 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3086    4.5540    3.0623 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1933    0.2254    0.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3801   -0.3133    0.0313 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3806   -1.6157   -0.6489 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3186   -2.4333   -1.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6478   -3.5496   -1.6762 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3570   -3.4324   -1.3643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7566   -4.2586   -1.5529 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9718   -3.8226   -1.0872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1206   -2.5884   -0.4380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7172   -2.1699    0.1078 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -1.0038   -1.7690   -0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1630   -2.2461   -0.7294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0861   -0.4445    0.3902 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6998   -0.7015    1.7183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8365   -0.1577    1.7799 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1561    0.5304    0.5660 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3028    1.2559    0.2371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4133    1.8601   -0.9901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3679    1.7289   -1.8765 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5036    2.4968   -3.4410 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -2.2264    1.0012   -1.5371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1091    0.3908   -0.3044 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1687    0.2798   -1.6930 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2399   -1.4858   -1.1773 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4087   -0.2229    0.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4600    2.3836    1.3214 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2427    5.5246    2.9119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3259    4.7416    2.6109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4270    4.3724    4.1378 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3402   -2.2586   -1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1040   -4.3423   -2.1651 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6335   -5.2121   -2.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8645   -4.4374   -1.2139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1543   -1.2930    2.4661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1227    1.3593    0.9312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3033    2.4367   -1.2756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4294    0.9111   -2.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
  7 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 20 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  1
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 30 32  1  0
 32 33  2  0
 13  5  2  0
 23 14  1  0
 33 24  1  0
 24 12  1  0
 33 27  1  0
 23 17  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  6 37  1  0
 11 38  1  0
 11 39  1  0
 11 40  1  0
 15 41  1  0
 16 42  1  0
 18 43  1  0
 19 44  1  0
 25 45  1  0
 28 46  1  0
 29 47  1  0
 32 48  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       5.892  -0.455  -0.921  0.00  0.00           C+0
HETATM    2  O   UNK     0       4.501  -0.551  -0.707  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.832   0.400  -0.043  0.00  0.00           C+0
HETATM    4  O   UNK     0       4.577   1.401   0.375  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.436   0.540   0.303  0.00  0.00           C+0
HETATM    6  N   UNK     0       1.914   1.583   0.981  0.00  0.00           N+0
HETATM    7  C   UNK     0       0.576   1.428   1.149  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.254   2.392   1.846  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.441   2.399   2.080  0.00  0.00           O+0
HETATM   10  O   UNK     0       0.404   3.567   2.374  0.00  0.00           O+0
HETATM   11  C   UNK     0      -0.309   4.554   3.062  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.193   0.225   0.553  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.380  -0.313   0.031  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.381  -1.616  -0.649  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.319  -2.433  -1.245  0.00  0.00           C+0
HETATM   16  N   UNK     0       1.648  -3.550  -1.676  0.00  0.00           N+0
HETATM   17  C   UNK     0       0.357  -3.432  -1.364  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.757  -4.259  -1.553  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.972  -3.823  -1.087  0.00  0.00           C+0
HETATM   20  C   UNK     0      -2.121  -2.588  -0.438  0.00  0.00           C+0
HETATM   21 Cl   UNK     0      -3.717  -2.170   0.108  0.00  0.00          Cl+0
HETATM   22  C   UNK     0      -1.004  -1.769  -0.255  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.163  -2.246  -0.729  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.086  -0.445   0.390  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.700  -0.702   1.718  0.00  0.00           C+0
HETATM   26  N   UNK     0      -2.837  -0.158   1.780  0.00  0.00           N+0
HETATM   27  C   UNK     0      -3.156   0.530   0.566  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.303   1.256   0.237  0.00  0.00           C+0
HETATM   29  C   UNK     0      -4.413   1.860  -0.990  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.368   1.729  -1.877  0.00  0.00           C+0
HETATM   31 Cl   UNK     0      -3.504   2.497  -3.441  0.00  0.00          Cl+0
HETATM   32  C   UNK     0      -2.226   1.001  -1.537  0.00  0.00           C+0
HETATM   33  C   UNK     0      -2.109   0.391  -0.304  0.00  0.00           C+0
HETATM   34  H   UNK     0       6.169   0.280  -1.693  0.00  0.00           H+0
HETATM   35  H   UNK     0       6.240  -1.486  -1.177  0.00  0.00           H+0
HETATM   36  H   UNK     0       6.409  -0.223   0.057  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.460   2.384   1.321  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.243   5.525   2.912  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.326   4.742   2.611  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.427   4.372   4.138  0.00  0.00           H+0
HETATM   41  H   UNK     0       3.340  -2.259  -1.358  0.00  0.00           H+0
HETATM   42  H   UNK     0       2.104  -4.342  -2.165  0.00  0.00           H+0
HETATM   43  H   UNK     0      -0.634  -5.212  -2.057  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.865  -4.437  -1.214  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.154  -1.293   2.466  0.00  0.00           H+0
HETATM   46  H   UNK     0      -5.123   1.359   0.931  0.00  0.00           H+0
HETATM   47  H   UNK     0      -5.303   2.437  -1.276  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.429   0.911  -2.235  0.00  0.00           H+0
CONECT    1    2   34   35   36                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   13                                                  
CONECT    6    5    7   37                                                  
CONECT    7    6    8   12                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   38   39   40                                             
CONECT   12    7   13   24                                                  
CONECT   13   12   14    5                                                  
CONECT   14   13   15   23                                                  
CONECT   15   14   16   41                                                  
CONECT   16   15   17   42                                                  
CONECT   17   16   18   23                                                  
CONECT   18   17   19   43                                                  
CONECT   19   18   20   44                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22   14   17                                                  
CONECT   24   22   25   33   12                                             
CONECT   25   24   26   45                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   33                                                  
CONECT   28   27   29   46                                                  
CONECT   29   28   30   47                                                  
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   48                                                  
CONECT   33   32   24   27                                                  
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    6                                                            
CONECT   38   11                                                            
CONECT   39   11                                                            
CONECT   40   11                                                            
CONECT   41   15                                                            
CONECT   42   16                                                            
CONECT   43   18                                                            
CONECT   44   19                                                            
CONECT   45   25                                                            
CONECT   46   28                                                            
CONECT   47   29                                                            
CONECT   48   32                                                            
MASTER        0    0    0    0    0    0    0    0   48    0  106    0
END

RDKit          3D

48 53  0  0  0  0  0  0  0  0999 V2000
    5.8924   -0.4554   -0.9206 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5010   -0.5513   -0.7066 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8320    0.4002   -0.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5772    1.4008    0.3753 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4356    0.5395    0.3031 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9138    1.5830    0.9809 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5760    1.4279    1.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2542    2.3917    1.8464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4411    2.3990    2.0798 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4036    3.5666    2.3743 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3086    4.5540    3.0623 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1933    0.2254    0.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3801   -0.3133    0.0313 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3806   -1.6157   -0.6489 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3186   -2.4333   -1.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6478   -3.5496   -1.6762 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3570   -3.4324   -1.3643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7566   -4.2586   -1.5529 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9718   -3.8226   -1.0872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1206   -2.5884   -0.4380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7172   -2.1699    0.1078 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -1.0038   -1.7690   -0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1630   -2.2461   -0.7294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0861   -0.4445    0.3902 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6998   -0.7015    1.7183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8365   -0.1577    1.7799 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1561    0.5304    0.5660 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3028    1.2559    0.2371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4133    1.8601   -0.9901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3679    1.7289   -1.8765 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5036    2.4968   -3.4410 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -2.2264    1.0012   -1.5371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1091    0.3908   -0.3044 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1687    0.2798   -1.6930 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2399   -1.4858   -1.1773 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4087   -0.2229    0.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4600    2.3836    1.3214 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2427    5.5246    2.9119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3259    4.7416    2.6109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4270    4.3724    4.1378 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3402   -2.2586   -1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1040   -4.3423   -2.1651 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6335   -5.2121   -2.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8645   -4.4374   -1.2139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1543   -1.2930    2.4661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1227    1.3593    0.9312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3033    2.4367   -1.2756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4294    0.9111   -2.2351 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
  7 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 20 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  1
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 30 32  1  0
 32 33  2  0
 13  5  2  0
 23 14  1  0
 33 24  1  0
 24 12  1  0
 33 27  1  0
 23 17  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  6 37  1  0
 11 38  1  0
 11 39  1  0
 11 40  1  0
 15 41  1  0
 16 42  1  0
 18 43  1  0
 19 44  1  0
 25 45  1  0
 28 46  1  0
 29 47  1  0
 32 48  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
3',5'-Dimethyl (3S)-5,9'-dichloro-4',13'-diazaspiro[indole-3,7'-tetracyclo[6.6.1.0,.0,]pentadecane]-1'(14'),2',5',8',10',12'(15')-hexaene-3',5'-dicarboxylic acid	Generator

Chemical Formula

C₂₄H₁₅Cl₂N₃O₄

Average Mass

480.3000 Da

Monoisotopic Mass

479.04396 Da

IUPAC Name

3',5'-dimethyl (3S)-5,9'-dichloro-4',13'-diazaspiro[indole-3,7'-tetracyclo[6.6.1.0^{2,6}.0^{12,15}]pentadecane]-1'(14'),2',5',8',10',12'(15')-hexaene-3',5'-dicarboxylate

Traditional Name

3',5'-dimethyl (3S)-5,9'-dichloro-4',13'-diazaspiro[indole-3,7'-tetracyclo[6.6.1.0^{2,6}.0^{12,15}]pentadecane]-1'(14'),2',5',8',10',12'(15')-hexaene-3',5'-dicarboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C2C3=CNC4=C3C(=C(Cl)C=C4)[C@@]3(C=NC4=C3C=C(Cl)C=C4)C2=C(N1)C(=O)OC

InChI Identifier

InChI=1S/C24H15Cl2N3O4/c1-32-22(30)20-17-11-8-27-15-6-4-13(26)18(16(11)15)24(19(17)21(29-20)23(31)33-2)9-28-14-5-3-10(25)7-12(14)24/h3-9,27,29H,1-2H3/t24-/m0/s1

InChI Key

PIYWZXUZYMFZSK-DEOSSOPVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	22694269

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.96	ALOGPS
logP	4.92	ChemAxon
logS	-6.2	ALOGPS
pKa (Strongest Acidic)	6.85	ChemAxon
pKa (Strongest Basic)	3.76	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	96.54 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	127.61 m³·mol⁻¹	ChemAxon
Polarizability	47.11 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002891

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29214708

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71511185

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zhang W, Liu Z, Li S, Yang T, Zhang Q, Ma L, Tian X, Zhang H, Huang C, Zhang S, Ju J, Shen Y, Zhang C: Spiroindimicins A-D: new bisindole alkaloids from a deep-sea-derived actinomycete. Org Lett. 2012 Jul 6;14(13):3364-7. doi: 10.1021/ol301343n. Epub 2012 Jun 13. [PubMed:22694269 ]

Showing NP-Card for Spiroindimicin A (NP0010868)

MOL for NP0010868 (Spiroindimicin A)

3D MOL for NP0010868 (Spiroindimicin A)

3D SDF for NP0010868 (Spiroindimicin A)

3D-SDF for NP0010868 (Spiroindimicin A)

PDB for NP0010868 (Spiroindimicin A)

3D PDB for NP0010868 (Spiroindimicin A)

SMILES for NP0010868 (Spiroindimicin A)

INCHI for NP0010868 (Spiroindimicin A)

Structure for NP0010868 (Spiroindimicin A)

3D Structure for NP0010868 (Spiroindimicin A)