NP-MRD: Showing NP-Card for GameXPeptide A (NP0010579)

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Record Information

Version

2.0

Created at

2021-01-05 20:02:57 UTC

Updated at

2021-07-15 17:06:29 UTC

NP-MRD ID

NP0010579

Secondary Accession Numbers

None

Natural Product Identification

Common Name

GameXPeptide A

Provided By

NPAtlas

Description

GameXPeptide A is found in Photorhabdus luminescens. Based on a literature review very few articles have been published on Luminmide A.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307012121333D          

 93 94  0  0  0  0            999 V2000
   -4.8525    2.5416   -0.4356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3547    1.2158    0.0931 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8286    1.1026    1.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8311    1.3203    0.1409 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2626    1.5881   -1.2220 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6155    0.5612   -2.1796 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1454   -0.7338   -2.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6872   -1.0932   -3.4849 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0814   -1.8336   -1.3232 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3881   -2.5490   -1.4825 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6591   -3.7158   -0.6298 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6621   -3.4967    0.8459 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8448   -4.9276   -1.0397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9414   -2.6760   -1.6183 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2886   -2.6504   -0.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0947   -3.6218   -1.2077 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8131   -1.6278   -0.0326 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7284   -2.2144    1.3579 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4965   -3.4332    1.5736 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9317   -4.6612    1.3401 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6536   -5.8329    1.5546 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9377   -5.7559    2.0026 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5022   -4.5084    2.2369 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7936   -3.3591    2.0261 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1951   -1.4204   -0.4140 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7542   -0.3330   -1.0999 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2765   -0.5519   -2.2603 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8464    1.0860   -0.6883 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3233    1.4452   -0.9916 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6525    2.8606   -0.6730 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1390    3.0528   -1.0141 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9452    3.8231   -1.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6350    1.2781    0.7176 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4624    1.6764    1.3870 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3905    1.2020    2.5895 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3533    2.5164    0.9506 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3893    3.8786    1.6592 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7152    4.8024    1.2337 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6927    4.5962    1.4689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0249    2.5801   -0.4209 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8034    1.8272   -1.2611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2301    1.2151   -2.2686 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8634    2.5652   -1.5602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9178    2.6356   -0.1444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2456    3.3466   -0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7243    0.3573   -0.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7715    0.5130    1.5829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9974    2.1298    1.9633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0848    0.6142    2.1743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3404    0.5662    0.7406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7058    2.2958    0.7140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8233    2.5251   -1.5563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3625    0.8235   -2.9081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9722   -1.5175   -0.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2020   -1.8025   -1.3603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5043   -2.8946   -2.5541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7285   -4.0174   -0.8769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6419   -3.3546    1.2858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1913   -4.3557    1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2311   -2.6000    1.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3107   -5.8762   -0.6378 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8166   -4.9108   -0.6303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8599   -5.0630   -2.1458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0532   -3.3874   -2.4045 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2227   -0.7038   -0.0210 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0064   -1.4006    2.0898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3766   -2.3635    1.5795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0793   -4.7564    0.9897 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1610   -6.7765    1.3549 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5223   -6.6671    2.1781 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5330   -4.4570    2.5965 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2664   -2.3842    2.2205 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8371   -2.2326   -0.1332 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1869    1.6712   -1.3266 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9463    0.7348   -0.4543 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4903    1.2984   -2.0927 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4505    3.2005    0.3362 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3196    4.1248   -1.3184 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7751    2.7761   -0.1699 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3295    2.4579   -1.9422 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2694    4.8433   -1.3589 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8661    3.6809   -1.6533 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4271    3.6150   -2.6404 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5247    1.0721    1.2999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5645    2.0429    1.4515 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2182    3.6768    2.7433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4726    4.2444    0.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2134    5.2943    2.0987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3567    5.5976    0.5379 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5567    5.6817    1.6111 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3622    4.2587    2.3109 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1892    4.3182    0.5445 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5339    3.3859   -0.9334 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
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 17 18  1  0  0  0  0
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 24 19  1  0  0  0  0
  1 43  1  0  0  0  0
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 40 93  1  0  0  0  0
M  END

     RDKit          3D

 93 94  0  0  0  0  0  0  0  0999 V2000
   -4.8525    2.5416   -0.4356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3547    1.2158    0.0931 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8286    1.1026    1.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8311    1.3203    0.1409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2626    1.5881   -1.2220 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -2.1454   -0.7338   -2.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6872   -1.0932   -3.4849 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0814   -1.8336   -1.3232 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3881   -2.5490   -1.4825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6591   -3.7158   -0.6298 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6621   -3.4967    0.8459 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.2886   -2.6504   -0.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0947   -3.6218   -1.2077 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8131   -1.6278   -0.0326 C   0  0  1  0  0  0  0  0  0  0  0  0
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    1.4965   -3.4332    1.5736 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9317   -4.6612    1.3401 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5022   -4.5084    2.2369 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7936   -3.3591    2.0261 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7243    0.3573   -0.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652307012121333D          

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M  END
> <DATABASE_ID>
NP0010579

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N1C(=O)[C@@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)[C@@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)[C@@]1([H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C32H51N5O5/c1-18(2)14-23-28(38)34-25(16-20(5)6)31(41)37-27(21(7)8)32(42)36-24(15-19(3)4)29(39)35-26(30(40)33-23)17-22-12-10-9-11-13-22/h9-13,18-21,23-27H,14-17H2,1-8H3,(H,33,40)(H,34,38)(H,35,39)(H,36,42)(H,37,41)/t23-,24+,25+,26-,27-/m1/s1

> <INCHI_KEY>
GZKGGHUTCBGDES-LXSUACKSSA-N

> <FORMULA>
C32H51N5O5

> <MOLECULAR_WEIGHT>
585.79

> <EXACT_MASS>
585.389019762

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
93

> <JCHEM_AVERAGE_POLARIZABILITY>
65.32549632039765

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,6S,9R,12S,15R)-3-benzyl-6,12,15-tris(2-methylpropyl)-9-(propan-2-yl)-1,4,7,10,13-pentaazacyclopentadecane-2,5,8,11,14-pentone

> <ALOGPS_LOGP>
2.29

> <JCHEM_LOGP>
3.623557071333333

> <ALOGPS_LOGS>
-4.49

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.166898117415629

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.70310422854745

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7328583875088235

> <JCHEM_POLAR_SURFACE_AREA>
145.5

> <JCHEM_REFRACTIVITY>
161.12240000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.88e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,6S,9R,12S,15R)-3-benzyl-9-isopropyl-6,12,15-tris(2-methylpropyl)-1,4,7,10,13-pentaazacyclopentadecane-2,5,8,11,14-pentone

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 93 94  0  0  0  0  0  0  0  0999 V2000
   -4.8525    2.5416   -0.4356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3547    1.2158    0.0931 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8286    1.1026    1.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8311    1.3203    0.1409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2626    1.5881   -1.2220 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6155    0.5612   -2.1796 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1454   -0.7338   -2.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6872   -1.0932   -3.4849 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0814   -1.8336   -1.3232 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3881   -2.5490   -1.4825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6591   -3.7158   -0.6298 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6621   -3.4967    0.8459 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8448   -4.9276   -1.0397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9414   -2.6760   -1.6183 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2886   -2.6504   -0.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0947   -3.6218   -1.2077 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8131   -1.6278   -0.0326 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7284   -2.2144    1.3579 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4965   -3.4332    1.5736 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9317   -4.6612    1.3401 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6536   -5.8329    1.5546 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9377   -5.7559    2.0026 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5022   -4.5084    2.2369 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7936   -3.3591    2.0261 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1951   -1.4204   -0.4140 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7542   -0.3330   -1.0999 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2765   -0.5519   -2.2603 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8464    1.0860   -0.6883 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3233    1.4452   -0.9916 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6525    2.8606   -0.6730 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1390    3.0528   -1.0141 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9452    3.8231   -1.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6350    1.2781    0.7176 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4624    1.6764    1.3870 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3905    1.2020    2.5895 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3533    2.5164    0.9506 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3893    3.8786    1.6592 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7152    4.8024    1.2337 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6927    4.5962    1.4689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0249    2.5801   -0.4209 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8034    1.8272   -1.2611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2301    1.2151   -2.2686 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8634    2.5652   -1.5602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9178    2.6356   -0.1444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2456    3.3466   -0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7243    0.3573   -0.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7715    0.5130    1.5829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9974    2.1298    1.9633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0848    0.6142    2.1743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3404    0.5662    0.7406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7058    2.2958    0.7140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8233    2.5251   -1.5563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3625    0.8235   -2.9081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9722   -1.5175   -0.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2020   -1.8025   -1.3603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5043   -2.8946   -2.5541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7285   -4.0174   -0.8769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6419   -3.3546    1.2858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1913   -4.3557    1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2311   -2.6000    1.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3107   -5.8762   -0.6378 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8166   -4.9108   -0.6303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8599   -5.0630   -2.1458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0532   -3.3874   -2.4045 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2227   -0.7038   -0.0210 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0064   -1.4006    2.0898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3766   -2.3635    1.5795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0793   -4.7564    0.9897 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1610   -6.7765    1.3549 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5223   -6.6671    2.1781 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5330   -4.4570    2.5965 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2664   -2.3842    2.2205 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8371   -2.2326   -0.1332 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1869    1.6712   -1.3266 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9463    0.7348   -0.4543 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4903    1.2984   -2.0927 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4505    3.2005    0.3362 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3196    4.1248   -1.3184 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7751    2.7761   -0.1699 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3295    2.4579   -1.9422 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2694    4.8433   -1.3589 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8661    3.6809   -1.6533 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4271    3.6150   -2.6404 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5247    1.0721    1.2999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5645    2.0429    1.4515 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2182    3.6768    2.7433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4726    4.2444    0.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2134    5.2943    2.0987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3567    5.5976    0.5379 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5567    5.6817    1.6111 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3622    4.2587    2.3109 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1892    4.3182    0.5445 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5339    3.3859   -0.9334 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
  9 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 17 25  1  0
 25 26  1  0
 26 27  2  0
 26 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 30 32  1  0
 28 33  1  0
 33 34  1  0
 34 35  2  0
 34 36  1  0
 36 37  1  0
 37 38  1  0
 37 39  1  0
 36 40  1  0
 40 41  1  0
 41 42  2  0
 41  5  1  0
 24 19  1  0
  1 43  1  0
  1 44  1  0
  1 45  1  0
  2 46  1  6
  3 47  1  0
  3 48  1  0
  3 49  1  0
  4 50  1  0
  4 51  1  0
  5 52  1  6
  6 53  1  0
  9 54  1  1
 10 55  1  0
 10 56  1  0
 11 57  1  6
 12 58  1  0
 12 59  1  0
 12 60  1  0
 13 61  1  0
 13 62  1  0
 13 63  1  0
 14 64  1  0
 17 65  1  1
 18 66  1  0
 18 67  1  0
 20 68  1  0
 21 69  1  0
 22 70  1  0
 23 71  1  0
 24 72  1  0
 25 73  1  0
 28 74  1  6
 29 75  1  0
 29 76  1  0
 30 77  1  1
 31 78  1  0
 31 79  1  0
 31 80  1  0
 32 81  1  0
 32 82  1  0
 32 83  1  0
 33 84  1  0
 36 85  1  1
 37 86  1  1
 38 87  1  0
 38 88  1  0
 38 89  1  0
 39 90  1  0
 39 91  1  0
 39 92  1  0
 40 93  1  0
M  END

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0      -4.853   2.542  -0.436  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.355   1.216   0.093  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.829   1.103   1.525  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.831   1.320   0.141  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.263   1.588  -1.222  0.00  0.00           C+0
HETATM    6  N   UNK     0      -2.615   0.561  -2.180  0.00  0.00           N+0
HETATM    7  C   UNK     0      -2.145  -0.734  -2.328  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.687  -1.093  -3.485  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.081  -1.834  -1.323  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.388  -2.549  -1.482  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.659  -3.716  -0.630  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.662  -3.497   0.846  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.845  -4.928  -1.040  0.00  0.00           C+0
HETATM   14  N   UNK     0      -0.941  -2.676  -1.618  0.00  0.00           N+0
HETATM   15  C   UNK     0       0.289  -2.650  -0.975  0.00  0.00           C+0
HETATM   16  O   UNK     0       1.095  -3.622  -1.208  0.00  0.00           O+0
HETATM   17  C   UNK     0       0.813  -1.628  -0.033  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.728  -2.214   1.358  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.496  -3.433   1.574  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.932  -4.661   1.340  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.654  -5.833   1.555  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.938  -5.756   2.003  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.502  -4.508   2.237  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.794  -3.359   2.026  0.00  0.00           C+0
HETATM   25  N   UNK     0       2.195  -1.420  -0.414  0.00  0.00           N+0
HETATM   26  C   UNK     0       2.754  -0.333  -1.100  0.00  0.00           C+0
HETATM   27  O   UNK     0       3.276  -0.552  -2.260  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.846   1.086  -0.688  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.323   1.445  -0.992  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.652   2.861  -0.673  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.139   3.053  -1.014  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.945   3.823  -1.648  0.00  0.00           C+0
HETATM   33  N   UNK     0       2.635   1.278   0.718  0.00  0.00           N+0
HETATM   34  C   UNK     0       1.462   1.676   1.387  0.00  0.00           C+0
HETATM   35  O   UNK     0       1.391   1.202   2.590  0.00  0.00           O+0
HETATM   36  C   UNK     0       0.353   2.516   0.951  0.00  0.00           C+0
HETATM   37  C   UNK     0       0.389   3.879   1.659  0.00  0.00           C+0
HETATM   38  C   UNK     0      -0.715   4.802   1.234  0.00  0.00           C+0
HETATM   39  C   UNK     0       1.693   4.596   1.469  0.00  0.00           C+0
HETATM   40  N   UNK     0       0.025   2.580  -0.421  0.00  0.00           N+0
HETATM   41  C   UNK     0      -0.803   1.827  -1.261  0.00  0.00           C+0
HETATM   42  O   UNK     0      -0.230   1.215  -2.269  0.00  0.00           O+0
HETATM   43  H   UNK     0      -4.863   2.565  -1.560  0.00  0.00           H+0
HETATM   44  H   UNK     0      -5.918   2.636  -0.144  0.00  0.00           H+0
HETATM   45  H   UNK     0      -4.246   3.347  -0.010  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.724   0.357  -0.459  0.00  0.00           H+0
HETATM   47  H   UNK     0      -5.771   0.513   1.583  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.997   2.130   1.963  0.00  0.00           H+0
HETATM   49  H   UNK     0      -4.085   0.614   2.174  0.00  0.00           H+0
HETATM   50  H   UNK     0      -2.340   0.566   0.741  0.00  0.00           H+0
HETATM   51  H   UNK     0      -2.706   2.296   0.714  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.823   2.525  -1.556  0.00  0.00           H+0
HETATM   53  H   UNK     0      -3.362   0.824  -2.908  0.00  0.00           H+0
HETATM   54  H   UNK     0      -1.972  -1.518  -0.293  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.202  -1.803  -1.360  0.00  0.00           H+0
HETATM   56  H   UNK     0      -3.504  -2.895  -2.554  0.00  0.00           H+0
HETATM   57  H   UNK     0      -4.729  -4.017  -0.877  0.00  0.00           H+0
HETATM   58  H   UNK     0      -2.642  -3.355   1.286  0.00  0.00           H+0
HETATM   59  H   UNK     0      -4.191  -4.356   1.358  0.00  0.00           H+0
HETATM   60  H   UNK     0      -4.231  -2.600   1.157  0.00  0.00           H+0
HETATM   61  H   UNK     0      -3.311  -5.876  -0.638  0.00  0.00           H+0
HETATM   62  H   UNK     0      -1.817  -4.911  -0.630  0.00  0.00           H+0
HETATM   63  H   UNK     0      -2.860  -5.063  -2.146  0.00  0.00           H+0
HETATM   64  H   UNK     0      -1.053  -3.387  -2.405  0.00  0.00           H+0
HETATM   65  H   UNK     0       0.223  -0.704  -0.021  0.00  0.00           H+0
HETATM   66  H   UNK     0       1.006  -1.401   2.090  0.00  0.00           H+0
HETATM   67  H   UNK     0      -0.377  -2.364   1.579  0.00  0.00           H+0
HETATM   68  H   UNK     0      -0.079  -4.756   0.990  0.00  0.00           H+0
HETATM   69  H   UNK     0       1.161  -6.777   1.355  0.00  0.00           H+0
HETATM   70  H   UNK     0       3.522  -6.667   2.178  0.00  0.00           H+0
HETATM   71  H   UNK     0       4.533  -4.457   2.596  0.00  0.00           H+0
HETATM   72  H   UNK     0       3.266  -2.384   2.220  0.00  0.00           H+0
HETATM   73  H   UNK     0       2.837  -2.233  -0.133  0.00  0.00           H+0
HETATM   74  H   UNK     0       2.187   1.671  -1.327  0.00  0.00           H+0
HETATM   75  H   UNK     0       4.946   0.735  -0.454  0.00  0.00           H+0
HETATM   76  H   UNK     0       4.490   1.298  -2.093  0.00  0.00           H+0
HETATM   77  H   UNK     0       4.450   3.200   0.336  0.00  0.00           H+0
HETATM   78  H   UNK     0       6.320   4.125  -1.318  0.00  0.00           H+0
HETATM   79  H   UNK     0       6.775   2.776  -0.170  0.00  0.00           H+0
HETATM   80  H   UNK     0       6.330   2.458  -1.942  0.00  0.00           H+0
HETATM   81  H   UNK     0       4.269   4.843  -1.359  0.00  0.00           H+0
HETATM   82  H   UNK     0       2.866   3.681  -1.653  0.00  0.00           H+0
HETATM   83  H   UNK     0       4.427   3.615  -2.640  0.00  0.00           H+0
HETATM   84  H   UNK     0       3.525   1.072   1.300  0.00  0.00           H+0
HETATM   85  H   UNK     0      -0.565   2.043   1.452  0.00  0.00           H+0
HETATM   86  H   UNK     0       0.218   3.677   2.743  0.00  0.00           H+0
HETATM   87  H   UNK     0      -1.473   4.244   0.662  0.00  0.00           H+0
HETATM   88  H   UNK     0      -1.213   5.294   2.099  0.00  0.00           H+0
HETATM   89  H   UNK     0      -0.357   5.598   0.538  0.00  0.00           H+0
HETATM   90  H   UNK     0       1.557   5.682   1.611  0.00  0.00           H+0
HETATM   91  H   UNK     0       2.362   4.259   2.311  0.00  0.00           H+0
HETATM   92  H   UNK     0       2.189   4.318   0.545  0.00  0.00           H+0
HETATM   93  H   UNK     0       0.534   3.386  -0.933  0.00  0.00           H+0
CONECT    1    2   43   44   45                                             
CONECT    2    1    3    4   46                                             
CONECT    3    2   47   48   49                                             
CONECT    4    2    5   50   51                                             
CONECT    5    4    6   41   52                                             
CONECT    6    5    7   53                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   14   54                                             
CONECT   10    9   11   55   56                                             
CONECT   11   10   12   13   57                                             
CONECT   12   11   58   59   60                                             
CONECT   13   11   61   62   63                                             
CONECT   14    9   15   64                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   25   65                                             
CONECT   18   17   19   66   67                                             
CONECT   19   18   20   24                                                  
CONECT   20   19   21   68                                                  
CONECT   21   20   22   69                                                  
CONECT   22   21   23   70                                                  
CONECT   23   22   24   71                                                  
CONECT   24   23   19   72                                                  
CONECT   25   17   26   73                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   33   74                                             
CONECT   29   28   30   75   76                                             
CONECT   30   29   31   32   77                                             
CONECT   31   30   78   79   80                                             
CONECT   32   30   81   82   83                                             
CONECT   33   28   34   84                                                  
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37   40   85                                             
CONECT   37   36   38   39   86                                             
CONECT   38   37   87   88   89                                             
CONECT   39   37   90   91   92                                             
CONECT   40   36   41   93                                                  
CONECT   41   40   42    5                                                  
CONECT   42   41                                                            
CONECT   43    1                                                            
CONECT   44    1                                                            
CONECT   45    1                                                            
CONECT   46    2                                                            
CONECT   47    3                                                            
CONECT   48    3                                                            
CONECT   49    3                                                            
CONECT   50    4                                                            
CONECT   51    4                                                            
CONECT   52    5                                                            
CONECT   53    6                                                            
CONECT   54    9                                                            
CONECT   55   10                                                            
CONECT   56   10                                                            
CONECT   57   11                                                            
CONECT   58   12                                                            
CONECT   59   12                                                            
CONECT   60   12                                                            
CONECT   61   13                                                            
CONECT   62   13                                                            
CONECT   63   13                                                            
CONECT   64   14                                                            
CONECT   65   17                                                            
CONECT   66   18                                                            
CONECT   67   18                                                            
CONECT   68   20                                                            
CONECT   69   21                                                            
CONECT   70   22                                                            
CONECT   71   23                                                            
CONECT   72   24                                                            
CONECT   73   25                                                            
CONECT   74   28                                                            
CONECT   75   29                                                            
CONECT   76   29                                                            
CONECT   77   30                                                            
CONECT   78   31                                                            
CONECT   79   31                                                            
CONECT   80   31                                                            
CONECT   81   32                                                            
CONECT   82   32                                                            
CONECT   83   32                                                            
CONECT   84   33                                                            
CONECT   85   36                                                            
CONECT   86   37                                                            
CONECT   87   38                                                            
CONECT   88   38                                                            
CONECT   89   38                                                            
CONECT   90   39                                                            
CONECT   91   39                                                            
CONECT   92   39                                                            
CONECT   93   40                                                            
MASTER        0    0    0    0    0    0    0    0   93    0  188    0
END

RDKit          3D

93 94  0  0  0  0  0  0  0  0999 V2000
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 41  5  1  0
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  1 44  1  0
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 25 73  1  0
 28 74  1  6
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 31 80  1  0
 32 81  1  0
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 33 84  1  0
 36 85  1  1
 37 86  1  1
 38 87  1  0
 38 88  1  0
 38 89  1  0
 39 90  1  0
 39 91  1  0
 39 92  1  0
 40 93  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₂H₅₁N₅O₅

Average Mass

585.7900 Da

Monoisotopic Mass

585.38902 Da

IUPAC Name

(3R,6S,9R,12S,15R)-3-benzyl-6,12,15-tris(2-methylpropyl)-9-(propan-2-yl)-1,4,7,10,13-pentaazacyclopentadecane-2,5,8,11,14-pentone

Traditional Name

(3R,6S,9R,12S,15R)-3-benzyl-9-isopropyl-6,12,15-tris(2-methylpropyl)-1,4,7,10,13-pentaazacyclopentadecane-2,5,8,11,14-pentone

CAS Registry Number

Not Available

SMILES

CC(C)C[C@H]1NC(=O)[C@@H](CC2=CC=CC=C2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](NC(=O)[C@H](CC(C)C)NC1=O)C(C)C

InChI Identifier

InChI=1S/C32H51N5O5/c1-18(2)14-23-28(38)34-25(16-20(5)6)31(41)37-27(21(7)8)32(42)36-24(15-19(3)4)29(39)35-26(30(40)33-23)17-22-12-10-9-11-13-22/h9-13,18-21,23-27H,14-17H2,1-8H3,(H,33,40)(H,34,38)(H,35,39)(H,36,42)(H,37,41)/t23-,24+,25+,26-,27-/m1/s1

InChI Key

GZKGGHUTCBGDES-LXSUACKSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Photorhabdus luminescens	NPAtlas	22266804

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.29	ALOGPS
logP	3.62	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	10.7	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	145.5 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	161.12 m³·mol⁻¹	ChemAxon
Polarizability	65.33 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA016754

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78442736

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101582538

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for GameXPeptide A (NP0010579)

MOL for NP0010579 (GameXPeptide A)

3D MOL for NP0010579 (GameXPeptide A)

3D SDF for NP0010579 (GameXPeptide A)

3D-SDF for NP0010579 (GameXPeptide A)

PDB for NP0010579 (GameXPeptide A)

3D PDB for NP0010579 (GameXPeptide A)

SMILES for NP0010579 (GameXPeptide A)

INCHI for NP0010579 (GameXPeptide A)

Structure for NP0010579 (GameXPeptide A)

3D Structure for NP0010579 (GameXPeptide A)