Np mrd loader

Record Information
Version2.0
Created at2021-01-05 20:02:51 UTC
Updated at2021-07-15 17:06:29 UTC
NP-MRD IDNP0010576
Secondary Accession NumbersNone
Natural Product Identification
Common NameJBIR-78
Provided ByNPAtlasNPAtlas Logo
Description JBIR-78 is found in Kibdelosporangium sp. AK-AA56. JBIR-78 was first documented in 2012 (PMID: 22264203). Based on a literature review very few articles have been published on (3R)-3-{[(1S)-1-{[(1R,2S)-1-[({[(1R)-1-{[(1S)-1-carboxy-2-phenylethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]-2-hydroxy-3-methylbutyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}-3-{[(2S)-1-hydroxy-2-[(1-hydroxy-2-phenylethylidene)amino]-3-methylbutylidene]amino}propanoic acid.
Structure
Data?1621576383
Synonyms
ValueSource
(3R)-3-{[(1S)-1-{[(1R,2S)-1-[({[(1R)-1-{[(1S)-1-carboxy-2-phenylethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]-2-hydroxy-3-methylbutyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}-3-{[(2S)-1-hydroxy-2-[(1-hydroxy-2-phenylethylidene)amino]-3-methylbutylidene]amino}propanoateGenerator
Chemical FormulaC40H55N7O12
Average Mass825.9170 Da
Monoisotopic Mass825.39087 Da
IUPAC Name(3R)-3-{[(1S)-1-{[(1R,2S)-1-[({[(1R)-1-{[(1S)-1-carboxy-2-phenylethyl]carbamoyl}ethyl]carbamoyl}methyl)carbamoyl]-2-hydroxy-3-methylbutyl]carbamoyl}ethyl]carbamoyl}-3-[(2S)-3-methyl-2-(2-phenylacetamido)butanamido]propanoic acid
Traditional Name(3R)-3-{[(1S)-1-{[(1R,2S)-1-[({[(1R)-1-{[(1S)-1-carboxy-2-phenylethyl]carbamoyl}ethyl]carbamoyl}methyl)carbamoyl]-2-hydroxy-3-methylbutyl]carbamoyl}ethyl]carbamoyl}-3-[(2S)-3-methyl-2-(2-phenylacetamido)butanamido]propanoic acid
CAS Registry NumberNot Available
SMILES
CC(C)[C@H](O)[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](CC(O)=O)NC(=O)[C@@H](NC(=O)CC1=CC=CC=C1)C(C)C)C(=O)NCC(=O)N[C@H](C)C(=O)N[C@@H](CC1=CC=CC=C1)C(O)=O
InChI Identifier
InChI=1S/C40H55N7O12/c1-21(2)32(46-29(48)18-26-15-11-8-12-16-26)39(57)44-27(19-31(50)51)37(55)43-24(6)36(54)47-33(34(52)22(3)4)38(56)41-20-30(49)42-23(5)35(53)45-28(40(58)59)17-25-13-9-7-10-14-25/h7-16,21-24,27-28,32-34,52H,17-20H2,1-6H3,(H,41,56)(H,42,49)(H,43,55)(H,44,57)(H,45,53)(H,46,48)(H,47,54)(H,50,51)(H,58,59)/t23-,24+,27-,28+,32+,33-,34+/m1/s1
InChI KeyAYHQEXAHORNEMG-CGBMOQSMSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Kibdelosporangium sp. AK-AA56NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.14ALOGPS
logP-0.55ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)3.7ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area298.53 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity208.56 m³·mol⁻¹ChemAxon
Polarizability86.2 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA006138
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID28530120
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound57331968
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Izumikawa M, Takagi M, Shin-Ya K: JBIR-78 and JBIR-95: phenylacetylated peptides isolated from Kibdelosporangium sp. AK-AA56. J Nat Prod. 2012 Feb 24;75(2):280-4. doi: 10.1021/np2008279. Epub 2012 Jan 20. [PubMed:22264203 ]