NP-MRD: Showing NP-Card for Geopyxin E (NP0010572)

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Record Information

Version

2.0

Created at

2021-01-05 20:02:41 UTC

Updated at

2021-07-15 17:06:28 UTC

NP-MRD ID

NP0010572

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Geopyxin E

Provided By

NPAtlas

Description

Geopyxin E is found in Geopyxis. Geopyxin E was first documented in 2017 (PMID: 29271155). Based on a literature review very few articles have been published on Geopyxin E.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242107393D          

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M  END

     RDKit          3D

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   -0.6368   -1.9872   -1.6817 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5833   -2.1858   -1.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7856   -3.0127    1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562   -2.5885    1.5145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6492   -2.5748    1.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9334   -1.4595    2.3381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2212   -0.9575   -0.0946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9806    0.7128    0.0282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7998    0.1486    1.6848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6960    1.3210    1.9548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8434    3.3252    0.6139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7731    2.6290    0.1609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9607    1.7478   -1.3893 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  6  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 17 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
  7  2  1  0  0  0  0
 25 11  1  0  0  0  0
 10  5  1  0  0  0  0
 15  5  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  6 29  1  0  0  0  0
  6 30  1  0  0  0  0
  7 31  1  6  0  0  0
  8 32  1  0  0  0  0
  8 33  1  0  0  0  0
  9 34  1  0  0  0  0
  9 35  1  0  0  0  0
 10 36  1  1  0  0  0
 12 37  1  0  0  0  0
 12 38  1  0  0  0  0
 12 39  1  0  0  0  0
 13 40  1  1  0  0  0
 14 41  1  0  0  0  0
 14 42  1  0  0  0  0
 15 43  1  6  0  0  0
 16 44  1  0  0  0  0
 18 45  1  0  0  0  0
 18 46  1  0  0  0  0
 18 47  1  0  0  0  0
 21 48  1  0  0  0  0
 22 49  1  0  0  0  0
 22 50  1  0  0  0  0
 23 51  1  1  0  0  0
 24 52  1  0  0  0  0
 25 53  1  1  0  0  0
 26 54  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0010572

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@]1(C([H])([H])[H])C([H])([H])[C@]([H])(O[H])[C@]([H])(O[H])[C@@]2(C([H])([H])[H])[C@]3([H])C([H])([H])C([H])([H])[C@@]4([H])C(=C([H])[H])C(=O)[C@@]3(C4([H])[H])[C@@]([H])(O[H])C([H])([H])[C@]12[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H28O6/c1-9-10-4-5-12-19(3)13(6-14(22)20(12,7-10)15(9)23)18(2,17(25)26)8-11(21)16(19)24/h10-14,16,21-22,24H,1,4-8H2,2-3H3,(H,25,26)/t10-,11+,12+,13-,14+,16+,18-,19+,20-/m1/s1

> <INCHI_KEY>
OQJXOOXQHWUZEZ-FAIRXIINSA-N

> <FORMULA>
C20H28O6

> <MOLECULAR_WEIGHT>
364.438

> <EXACT_MASS>
364.188588622

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
37.47785756712568

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2S,4S,5R,7S,8R,9S,10S,13R)-2,7,8-trihydroxy-5,9-dimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

> <ALOGPS_LOGP>
0.57

> <JCHEM_LOGP>
1.1159560259999999

> <ALOGPS_LOGS>
-2.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.563605902951206

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.2971638013698215

> <JCHEM_PKA_STRONGEST_BASIC>
-3.016999174490717

> <JCHEM_POLAR_SURFACE_AREA>
115.06

> <JCHEM_REFRACTIVITY>
92.5011

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.51e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,4S,5R,7S,8R,9S,10S,13R)-2,7,8-trihydroxy-5,9-dimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 54 57  0  0  0  0  0  0  0  0999 V2000
    5.2083   -0.5917    0.9224 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0290   -0.2248    0.4739 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7036   -0.6813    0.8827 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4132   -1.1757    2.0146 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7323   -0.4738   -0.2514 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6719   -0.0335   -1.3832 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7108    0.7771   -0.5943 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0024    1.8942    0.0647 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5162    1.9699   -0.1485 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8631    0.6552    0.0862 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5506    0.5353   -0.4953 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5169    0.5163   -2.0096 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0763   -0.7548    0.0947 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3621   -1.8748   -0.6068 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1112   -1.8029   -0.5055 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5219   -2.7860    0.4339 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5237   -0.9236    0.2376 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7414   -1.9766    1.3513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3048   -1.3978   -0.8978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9068   -1.7191   -2.0395 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6792   -1.5226   -0.7260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1963    0.3277    0.7445 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2759    1.4544    1.0447 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0691    2.6019    1.2382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3899    1.7294   -0.1302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1369    2.2198   -1.2261 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0889   -0.1368    0.4916 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3568   -1.3237    1.6995 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2190    0.6820   -2.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1601   -0.8915   -1.8585 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5785    1.0378   -1.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1801    1.9068    1.1756 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4584    2.8537   -0.2941 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2622    2.4648   -1.1105 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1859    2.7345    0.6222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6766    0.6056    1.2053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0263    1.4863   -2.3157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5593    0.6324   -2.3581 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0617   -0.2659   -2.4686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6697   -0.7998    1.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7448   -2.8466   -0.1663 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6368   -1.9872   -1.6817 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5833   -2.1858   -1.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7856   -3.0127    1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562   -2.5885    1.5145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6492   -2.5748    1.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9334   -1.4595    2.3381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2212   -0.9575   -0.0946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9806    0.7128    0.0282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7998    0.1486    1.6848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6960    1.3210    1.9548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8434    3.3252    0.6139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7731    2.6290    0.1609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9607    1.7478   -1.3893 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  2  0
  5  3  1  1
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  6
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 13 17  1  0
 17 18  1  0
 17 19  1  6
 19 20  2  0
 19 21  1  0
 17 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
  7  2  1  0
 25 11  1  0
 10  5  1  0
 15  5  1  0
  1 27  1  0
  1 28  1  0
  6 29  1  0
  6 30  1  0
  7 31  1  6
  8 32  1  0
  8 33  1  0
  9 34  1  0
  9 35  1  0
 10 36  1  1
 12 37  1  0
 12 38  1  0
 12 39  1  0
 13 40  1  1
 14 41  1  0
 14 42  1  0
 15 43  1  6
 16 44  1  0
 18 45  1  0
 18 46  1  0
 18 47  1  0
 21 48  1  0
 22 49  1  0
 22 50  1  0
 23 51  1  1
 24 52  1  0
 25 53  1  1
 26 54  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       5.208  -0.592   0.922  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.029  -0.225   0.474  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.704  -0.681   0.883  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.413  -1.176   2.015  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.732  -0.474  -0.251  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.672  -0.034  -1.383  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.711   0.777  -0.594  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.002   1.894   0.065  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.516   1.970  -0.149  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.863   0.655   0.086  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.551   0.535  -0.495  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.517   0.516  -2.010  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.076  -0.755   0.095  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.362  -1.875  -0.607  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.111  -1.803  -0.505  0.00  0.00           C+0
HETATM   16  O   UNK     0       1.522  -2.786   0.434  0.00  0.00           O+0
HETATM   17  C   UNK     0      -2.524  -0.924   0.238  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.741  -1.977   1.351  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.305  -1.398  -0.898  0.00  0.00           C+0
HETATM   20  O   UNK     0      -2.907  -1.719  -2.039  0.00  0.00           O+0
HETATM   21  O   UNK     0      -4.679  -1.523  -0.726  0.00  0.00           O+0
HETATM   22  C   UNK     0      -3.196   0.328   0.745  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.276   1.454   1.045  0.00  0.00           C+0
HETATM   24  O   UNK     0      -3.069   2.602   1.238  0.00  0.00           O+0
HETATM   25  C   UNK     0      -1.390   1.729  -0.130  0.00  0.00           C+0
HETATM   26  O   UNK     0      -2.137   2.220  -1.226  0.00  0.00           O+0
HETATM   27  H   UNK     0       6.089  -0.137   0.492  0.00  0.00           H+0
HETATM   28  H   UNK     0       5.357  -1.324   1.700  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.219   0.682  -2.063  0.00  0.00           H+0
HETATM   30  H   UNK     0       3.160  -0.892  -1.859  0.00  0.00           H+0
HETATM   31  H   UNK     0       4.579   1.038  -1.195  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.180   1.907   1.176  0.00  0.00           H+0
HETATM   33  H   UNK     0       3.458   2.854  -0.294  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.262   2.465  -1.111  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.186   2.735   0.622  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.677   0.606   1.205  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.026   1.486  -2.316  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.559   0.632  -2.358  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.062  -0.266  -2.469  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.670  -0.800   1.159  0.00  0.00           H+0
HETATM   41  H   UNK     0      -0.745  -2.847  -0.166  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.637  -1.987  -1.682  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.583  -2.186  -1.464  0.00  0.00           H+0
HETATM   44  H   UNK     0       0.786  -3.013   1.046  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.856  -2.588   1.515  0.00  0.00           H+0
HETATM   46  H   UNK     0      -3.649  -2.575   1.165  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.933  -1.460   2.338  0.00  0.00           H+0
HETATM   48  H   UNK     0      -5.221  -0.958  -0.095  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.981   0.713   0.028  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.800   0.149   1.685  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.696   1.321   1.955  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.843   3.325   0.614  0.00  0.00           H+0
HETATM   53  H   UNK     0      -0.773   2.629   0.161  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.961   1.748  -1.389  0.00  0.00           H+0
CONECT    1    2   27   28                                                  
CONECT    2    1    3    7                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   10   15                                             
CONECT    6    5    7   29   30                                             
CONECT    7    6    8    2   31                                             
CONECT    8    7    9   32   33                                             
CONECT    9    8   10   34   35                                             
CONECT   10    9   11    5   36                                             
CONECT   11   10   12   13   25                                             
CONECT   12   11   37   38   39                                             
CONECT   13   11   14   17   40                                             
CONECT   14   13   15   41   42                                             
CONECT   15   14   16    5   43                                             
CONECT   16   15   44                                                       
CONECT   17   13   18   19   22                                             
CONECT   18   17   45   46   47                                             
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   48                                                       
CONECT   22   17   23   49   50                                             
CONECT   23   22   24   25   51                                             
CONECT   24   23   52                                                       
CONECT   25   23   26   11   53                                             
CONECT   26   25   54                                                       
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    6                                                            
CONECT   30    6                                                            
CONECT   31    7                                                            
CONECT   32    8                                                            
CONECT   33    8                                                            
CONECT   34    9                                                            
CONECT   35    9                                                            
CONECT   36   10                                                            
CONECT   37   12                                                            
CONECT   38   12                                                            
CONECT   39   12                                                            
CONECT   40   13                                                            
CONECT   41   14                                                            
CONECT   42   14                                                            
CONECT   43   15                                                            
CONECT   44   16                                                            
CONECT   45   18                                                            
CONECT   46   18                                                            
CONECT   47   18                                                            
CONECT   48   21                                                            
CONECT   49   22                                                            
CONECT   50   22                                                            
CONECT   51   23                                                            
CONECT   52   24                                                            
CONECT   53   25                                                            
CONECT   54   26                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  114    0
END

RDKit          3D

54 57  0  0  0  0  0  0  0  0999 V2000
    5.2083   -0.5917    0.9224 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0290   -0.2248    0.4739 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7036   -0.6813    0.8827 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4132   -1.1757    2.0146 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7323   -0.4738   -0.2514 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6719   -0.0335   -1.3832 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7108    0.7771   -0.5943 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0024    1.8942    0.0647 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5162    1.9699   -0.1485 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8631    0.6552    0.0862 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5506    0.5353   -0.4953 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5169    0.5163   -2.0096 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0763   -0.7548    0.0947 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3621   -1.8748   -0.6068 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1112   -1.8029   -0.5055 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5219   -2.7860    0.4339 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5237   -0.9236    0.2376 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7414   -1.9766    1.3513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3048   -1.3978   -0.8978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9068   -1.7191   -2.0395 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6792   -1.5226   -0.7260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1963    0.3277    0.7445 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2759    1.4544    1.0447 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0691    2.6019    1.2382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3899    1.7294   -0.1302 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1369    2.2198   -1.2261 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0889   -0.1368    0.4916 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3568   -1.3237    1.6995 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2190    0.6820   -2.0627 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1601   -0.8915   -1.8585 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5785    1.0378   -1.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1801    1.9068    1.1756 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4584    2.8537   -0.2941 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2622    2.4648   -1.1105 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1859    2.7345    0.6222 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6766    0.6056    1.2053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0263    1.4863   -2.3157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5593    0.6324   -2.3581 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0617   -0.2659   -2.4686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6697   -0.7998    1.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7448   -2.8466   -0.1663 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6368   -1.9872   -1.6817 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5833   -2.1858   -1.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7856   -3.0127    1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562   -2.5885    1.5145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6492   -2.5748    1.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9334   -1.4595    2.3381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2212   -0.9575   -0.0946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9806    0.7128    0.0282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7998    0.1486    1.6848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6960    1.3210    1.9548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8434    3.3252    0.6139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7731    2.6290    0.1609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9607    1.7478   -1.3893 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  2  0
  5  3  1  1
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  6
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 13 17  1  0
 17 18  1  0
 17 19  1  6
 19 20  2  0
 19 21  1  0
 17 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
  7  2  1  0
 25 11  1  0
 10  5  1  0
 15  5  1  0
  1 27  1  0
  1 28  1  0
  6 29  1  0
  6 30  1  0
  7 31  1  6
  8 32  1  0
  8 33  1  0
  9 34  1  0
  9 35  1  0
 10 36  1  1
 12 37  1  0
 12 38  1  0
 12 39  1  0
 13 40  1  1
 14 41  1  0
 14 42  1  0
 15 43  1  6
 16 44  1  0
 18 45  1  0
 18 46  1  0
 18 47  1  0
 21 48  1  0
 22 49  1  0
 22 50  1  0
 23 51  1  1
 24 52  1  0
 25 53  1  1
 26 54  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(1R,2S,4S,5R,7S,8R,9S,10S,13R)-2,7,8-Trihydroxy-5,9-dimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0,.0,]hexadecane-5-carboxylate	Generator

Chemical Formula

C₂₀H₂₈O₆

Average Mass

364.4380 Da

Monoisotopic Mass

364.18859 Da

IUPAC Name

(1R,2S,4S,5R,7S,8R,9S,10S,13R)-2,7,8-trihydroxy-5,9-dimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

Traditional Name

(1R,2S,4S,5R,7S,8R,9S,10S,13R)-2,7,8-trihydroxy-5,9-dimethyl-14-methylidene-15-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

CAS Registry Number

Not Available

SMILES

C[C@]1(C[C@H](O)[C@H](O)[C@@]2(C)[C@@H]3CC[C@@H]4C[C@@]3([C@@H](O)C[C@H]12)C(=O)C4=C)C(O)=O

InChI Identifier

InChI=1S/C20H28O6/c1-9-10-4-5-12-19(3)13(6-14(22)20(12,7-10)15(9)23)18(2,17(25)26)8-11(21)16(19)24/h10-14,16,21-22,24H,1,4-8H2,2-3H3,(H,25,26)/t10-,11+,12+,13-,14+,16+,18-,19+,20-/m1/s1

InChI Key

OQJXOOXQHWUZEZ-FAIRXIINSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Geopyxis	NPAtlas	22264149

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.57	ALOGPS
logP	1.12	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	4.3	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	115.06 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	92.5 m³·mol⁻¹	ChemAxon
Polarizability	37.48 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA017715

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28516725

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

57380179

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wang JN, Zhang Y, Song LY, Peng YB, Li WJ: [Chemical constituents from Pteris dispar and their anti-tumor activity in vitro]. Zhongguo Zhong Yao Za Zhi. 2017 Nov;42(21):4159-4164. doi: 10.19540/j.cnki.cjcmm.20170905.002. [PubMed:29271155 ]

Showing NP-Card for Geopyxin E (NP0010572)

MOL for NP0010572 (Geopyxin E)

3D MOL for NP0010572 (Geopyxin E)

3D SDF for NP0010572 (Geopyxin E)

3D-SDF for NP0010572 (Geopyxin E)

PDB for NP0010572 (Geopyxin E)

3D PDB for NP0010572 (Geopyxin E)

SMILES for NP0010572 (Geopyxin E)

INCHI for NP0010572 (Geopyxin E)

Structure for NP0010572 (Geopyxin E)

3D Structure for NP0010572 (Geopyxin E)