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Record Information
Version2.0
Created at2021-01-05 19:42:38 UTC
Updated at2021-07-15 17:05:04 UTC
NP-MRD IDNP0010071
Secondary Accession NumbersNone
Natural Product Identification
Common NameRoimatacene
Provided ByNPAtlasNPAtlas Logo
Description(2E,6E,8E,10E,12E,20E,22E,24E)-5,15,16,17,19-pentahydroxy-8,16,20-trimethylheptacosa-2,6,8,10,12,20,22,24-octaenoic acid belongs to the class of organic compounds known as very long-chain fatty acids. These are fatty acids with an aliphatic tail that contains at least 22 carbon atoms. Roimatacene is found in Cystobacter ferrugineus. Roimatacene was first documented in 2011 (PMID: 21618624). Based on a literature review very few articles have been published on (2E,6E,8E,10E,12E,20E,22E,24E)-5,15,16,17,19-pentahydroxy-8,16,20-trimethylheptacosa-2,6,8,10,12,20,22,24-octaenoic acid.
Structure
Data?1621576230
Synonyms
ValueSource
(2E,6E,8E,10E,12E,20E,22E,24E)-5,15,16,17,19-Pentahydroxy-8,16,20-trimethylheptacosa-2,6,8,10,12,20,22,24-octaenoateGenerator
Chemical FormulaC30H44O7
Average Mass516.6750 Da
Monoisotopic Mass516.30870 Da
IUPAC Name(2E,5S,8E,10E,12E,15R,16S,19R,20E,22E,24E)-5,15,16,17,19-pentahydroxy-8,16,20-trimethylheptacosa-2,6,8,10,12,20,22,24-octaenoic acid
Traditional Name(2E,5S,8E,10E,12E,15R,16S,19R,20E,22E,24E)-5,15,16,17,19-pentahydroxy-8,16,20-trimethylheptacosa-2,6,8,10,12,20,22,24-octaenoic acid
CAS Registry NumberNot Available
SMILES
CC\C=C\C=C\C=C(/C)C(O)CC(O)C(C)(O)C(O)C\C=C\C=C\C=C(/C)\C=C\C(O)C\C=C\C(O)=O
InChI Identifier
InChI=1S/C30H44O7/c1-5-6-7-8-12-16-24(3)26(32)22-28(34)30(4,37)27(33)18-13-10-9-11-15-23(2)20-21-25(31)17-14-19-29(35)36/h6-16,19-21,25-28,31-34,37H,5,17-18,22H2,1-4H3,(H,35,36)/b7-6+,11-9+,12-8+,13-10+,19-14+,21-20+,23-15+,24-16+
InChI KeyQDCPCPBYFNXINO-RQFZCCHVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cystobacter ferrugineusNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as very long-chain fatty acids. These are fatty acids with an aliphatic tail that contains at least 22 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentVery long-chain fatty acids
Alternative Parents
Substituents
  • Very long-chain fatty acid
  • Branched fatty acid
  • Hydroxy fatty acid
  • Methyl-branched fatty acid
  • Unsaturated fatty acid
  • Tertiary alcohol
  • Secondary alcohol
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Polyol
  • Organic oxide
  • Alcohol
  • Organic oxygen compound
  • Organooxygen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.79ALOGPS
logP3.31ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)4.8ChemAxon
pKa (Strongest Basic)-1.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area138.45 ŲChemAxon
Rotatable Bond Count17ChemAxon
Refractivity157.19 m³·mol⁻¹ChemAxon
Polarizability62.05 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA014832
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444857
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139587234
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Zander W, Gerth K, Mohr KI, Kessler W, Jansen R, Muller R: Roimatacene: an antibiotic against Gram-negative bacteria isolated from Cystobacter ferrugineus Cb G35 (Myxobacteria). Chemistry. 2011 Jul 4;17(28):7875-81. doi: 10.1002/chem.201003677. Epub 2011 May 26. [PubMed:21618624 ]