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Record Information
Version2.0
Created at2021-01-05 19:40:50 UTC
Updated at2021-07-15 17:04:54 UTC
NP-MRD IDNP0010022
Secondary Accession NumbersNone
Natural Product Identification
Common NameLobophorin D
Provided ByNPAtlasNPAtlas Logo
DescriptionN-(4-amino-6-{[(1S,3R,6S,9S,11Z,13S,16S,17S,18R,20S,21R,22S,23Z)-23-hydroxy-17-{[5-hydroxy-4-({4-hydroxy-5-[(4-hydroxy-5-methoxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-4-(hydroxymethyl)-3,8,12,18,20,22-hexamethyl-25,27-dioxo-26-oxapentacyclo[22.2.1.0¹,⁶.0¹³,²².0¹⁶,²¹]Heptacosa-4,7,11,14,23-pentaen-9-yl]oxy}-2,4-dimethyloxan-3-yl)methoxycarboximidic acid belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units. Lobophorin D is found in Streptomyces and Streptomyces carnosus. Lobophorin D was first documented in 2011 (PMID: 21556165). Based on a literature review very few articles have been published on N-(4-amino-6-{[(1S,3R,6S,9S,11Z,13S,16S,17S,18R,20S,21R,22S,23Z)-23-hydroxy-17-{[5-hydroxy-4-({4-hydroxy-5-[(4-hydroxy-5-methoxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-4-(hydroxymethyl)-3,8,12,18,20,22-hexamethyl-25,27-dioxo-26-oxapentacyclo[22.2.1.0¹,⁶.0¹³,²².0¹⁶,²¹]Heptacosa-4,7,11,14,23-pentaen-9-yl]oxy}-2,4-dimethyloxan-3-yl)methoxycarboximidic acid.
Structure
Data?1621576216
Synonyms
ValueSource
N-(4-Amino-6-{[(1S,3R,6S,9S,11Z,13S,16S,17S,18R,20S,21R,22S,23Z)-23-hydroxy-17-{[5-hydroxy-4-({4-hydroxy-5-[(4-hydroxy-5-methoxy-6-methyloxan-2-yl)oxy]-6-methyloxan-2-yl}oxy)-6-methyloxan-2-yl]oxy}-4-(hydroxymethyl)-3,8,12,18,20,22-hexamethyl-25,27-dioxo-26-oxapentacyclo[22.2.1.0,.0,.0,]heptacosa-4,7,11,14,23-pentaen-9-yl]oxy}-2,4-dimethyloxan-3-yl)methoxycarboximidateGenerator
Chemical FormulaC61H92N2O19
Average Mass1157.4020 Da
Monoisotopic Mass1156.62943 Da
IUPAC Namemethyl N-[(2S,3S,4R,6S)-4-amino-6-{[(1S,3R,6S,7Z,9S,11Z,16S,17S,18R,20S,21R,22S,23Z)-23-hydroxy-17-{[(2R,4S,5R,6R)-5-hydroxy-4-{[(2R,4S,5S,6R)-4-hydroxy-5-{[(2S,4S,5R,6R)-4-hydroxy-5-methoxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4-(hydroxymethyl)-3,8,12,18,20,22-hexamethyl-25,27-dioxo-26-oxapentacyclo[22.2.1.0^{1,6}.0^{13,22}.0^{16,21}]heptacosa-4,7,11,14,23-pentaen-9-yl]oxy}-2,4-dimethyloxan-3-yl]carbamate
Traditional Namemethyl N-[(2S,3S,4R,6S)-4-amino-6-{[(1S,3R,6S,7Z,9S,11Z,16S,17S,18R,20S,21R,22S,23Z)-23-hydroxy-17-{[(2R,4S,5R,6R)-5-hydroxy-4-{[(2R,4S,5S,6R)-4-hydroxy-5-{[(2S,4S,5R,6R)-4-hydroxy-5-methoxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4-(hydroxymethyl)-3,8,12,18,20,22-hexamethyl-25,27-dioxo-26-oxapentacyclo[22.2.1.0^{1,6}.0^{13,22}.0^{16,21}]heptacosa-4,7,11,14,23-pentaen-9-yl]oxy}-2,4-dimethyloxan-3-yl]carbamate
CAS Registry NumberNot Available
SMILES
COC1C(O)CC(OC2C(O)CC(OC3CC(O[C@H]4[C@H](C)C[C@H](C)[C@@H]5[C@@H]4C=C[C@H]4\C(C)=C/C[C@H](OC6CC(C)(N)C(NC(=O)OC)C(C)O6)\C(C)=C/[C@@H]6C=C(CO)[C@H](C)C[C@]66OC(=O)\C(C6=O)=C(O)\[C@@]54C)OC(C)C3O)OC2C)OC1C
InChI Identifier
InChI=1S/C61H92N2O19/c1-27-14-17-42(78-47-25-59(10,62)54(35(9)77-47)63-58(71)73-13)28(2)19-37-20-36(26-64)31(5)24-61(37)56(69)48(57(70)82-61)55(68)60(11)39(27)16-15-38-49(60)29(3)18-30(4)51(38)80-46-23-43(50(67)32(6)74-46)79-44-22-41(66)53(34(8)76-44)81-45-21-40(65)52(72-12)33(7)75-45/h14-16,19-20,29-35,37-47,49-54,64-68H,17-18,21-26,62H2,1-13H3,(H,63,71)/b27-14-,28-19-,55-48-/t29-,30+,31+,32?,33?,34?,35?,37+,38-,39-,40?,41?,42-,43?,44?,45?,46?,47?,49+,50?,51-,52?,53?,54?,59?,60+,61-/m0/s1
InChI KeyBFIFMYVVBKSDFE-OTHQJNQTSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces carnosusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesterterpenoids
Direct ParentSesterterpenoids
Alternative Parents
Substituents
  • Sesterterpenoid
  • Aminoglycoside core
  • Terpene glycoside
  • Macrolide
  • O-glycosyl compound
  • Glycosyl compound
  • Disaccharide
  • Amino saccharide
  • Oxane
  • Gamma butyrolactone
  • 3-furanone
  • Vinylogous acid
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Tetrahydrofuran
  • Secondary alcohol
  • Lactone
  • Ketone
  • Carboxylic acid ester
  • Amino acid or derivatives
  • Oxacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Enol
  • Dialkyl ether
  • Carboxylic acid derivative
  • Carboximidic acid derivative
  • Acetal
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary amine
  • Primary alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Carbonyl group
  • Amine
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.78ALOGPS
logP3.13ChemAxon
logS-4.9ALOGPS
pKa (Strongest Acidic)3.51ChemAxon
pKa (Strongest Basic)9.48ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count18ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area291.94 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity298.46 m³·mol⁻¹ChemAxon
Polarizability125.56 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA006036
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78445107
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139584775
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Wei RB, Xi T, Li J, Wang P, Li FC, Lin YC, Qin S: Lobophorin C and D, new kijanimicin derivatives from a marine sponge-associated actinomycetal strain AZS17. Mar Drugs. 2011 Mar 17;9(3):359-68. doi: 10.3390/md9030359. [PubMed:21556165 ]