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Record Information
Version2.0
Created at2021-01-05 19:40:48 UTC
Updated at2024-09-12 19:47:51 UTC
NP-MRD IDNP0010021
Secondary Accession NumbersNone
Natural Product Identification
Common NameLobophorin C
Provided ByNPAtlasNPAtlas Logo
DescriptionLobophorin C belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units. Lobophorin C is found in Streptomyces sp. Lobophorin C was first documented in 2011 (PMID: 21556165). Based on a literature review a small amount of articles have been published on Lobophorin C.
Structure
Data?1621576215
SynonymsNot Available
Chemical FormulaC61H92N2O19
Average Mass1157.4020 Da
Monoisotopic Mass1156.62943 Da
IUPAC Namemethyl N-[(2S,3S,4R,6R)-4-amino-6-{[(1R,3S,6S,9R,13R,16R,17R,18R,20R,21S,22R)-23-hydroxy-17-{[(2S,4R,5S,6S)-5-hydroxy-4-{[(2R,4R,5R,6S)-4-hydroxy-5-{[(2R,4R,5R,6S)-4-hydroxy-5-methoxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4-(hydroxymethyl)-3,8,12,18,20,22-hexamethyl-25,27-dioxo-26-oxapentacyclo[22.2.1.0^{1,6}.0^{13,22}.0^{16,21}]heptacosa-4,7,11,14,23-pentaen-9-yl]oxy}-2,4-dimethyloxan-3-yl]carbamate
Traditional Namemethyl N-[(2S,3S,4R,6R)-4-amino-6-{[(1R,3S,6S,9R,13R,16R,17R,18R,20R,21S,22R)-23-hydroxy-17-{[(2S,4R,5S,6S)-5-hydroxy-4-{[(2R,4R,5R,6S)-4-hydroxy-5-{[(2R,4R,5R,6S)-4-hydroxy-5-methoxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4-(hydroxymethyl)-3,8,12,18,20,22-hexamethyl-25,27-dioxo-26-oxapentacyclo[22.2.1.0^{1,6}.0^{13,22}.0^{16,21}]heptacosa-4,7,11,14,23-pentaen-9-yl]oxy}-2,4-dimethyloxan-3-yl]carbamate
CAS Registry NumberNot Available
SMILES
[H]OC1=C2C(=O)O[C@]3(C2=O)C([H])([H])[C@@]([H])(C(=C([H])[C@@]3([H])C([H])=C(C([H])([H])[H])[C@]([H])(O[C@]2([H])O[C@@]([H])(C([H])([H])[H])[C@@]([H])(N([H])C(=O)OC([H])([H])[H])[C@@](N([H])[H])(C([H])([H])[H])C2([H])[H])C([H])([H])C([H])=C(C([H])([H])[H])[C@@]2([H])C([H])=C([H])[C@@]3([H])[C@]([H])(O[C@@]4([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(O[C@@]5([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[C@@]6([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(OC([H])([H])[H])[C@]([H])(O[H])C6([H])[H])[C@]([H])(O[H])C5([H])[H])C4([H])[H])[C@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@]3([H])[C@@]12C([H])([H])[H])C([H])([H])O[H])C([H])([H])[H]
InChI Identifier
InChI=1/C61H92N2O19/c1-27-14-17-42(78-47-25-59(10,62)54(35(9)77-47)63-58(71)73-13)28(2)19-37-20-36(26-64)31(5)24-61(37)56(69)48(57(70)82-61)55(68)60(11)39(27)16-15-38-49(60)29(3)18-30(4)51(38)80-46-23-43(50(67)32(6)74-46)79-44-22-41(66)53(34(8)76-44)81-45-21-40(65)52(72-12)33(7)75-45/h14-16,19-20,29-35,37-47,49-54,64-68H,17-18,21-26,62H2,1-13H3,(H,63,71)/b27-14+,28-19-,55-48-/t29-,30-,31+,32+,33+,34+,35+,37-,38-,39-,40-,41-,42-,43-,44-,45-,46-,47+,49+,50+,51-,52+,53+,54-,59-,60+,61-/s2
InChI KeyBFIFMYVVBKSDFE-SIOZAYTONA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesterterpenoids
Direct ParentSesterterpenoids
Alternative Parents
Substituents
  • Sesterterpenoid
  • Polyprenol skeleton
  • Terpene glycoside
  • Fatty acid ester
  • Beta-keto acid
  • Fatty acyl
  • Alpha-branched alpha,beta-unsaturated-ketone
  • Oxane
  • Monosaccharide
  • Keto acid
  • Gamma butyrolactone
  • 3-furanone
  • Methylcarbamate
  • Vinylogous acid
  • Alpha,beta-unsaturated ketone
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Carbamic acid ester
  • Tetrahydrofuran
  • Enone
  • Acryloyl-group
  • Secondary alcohol
  • Carbonic acid derivative
  • Lactone
  • Ketone
  • Carboxylic acid ester
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.76ChemAxon
pKa (Strongest Acidic)7.84ChemAxon
pKa (Strongest Basic)9.39ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count18ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area291.94 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity298.46 m³·mol⁻¹ChemAxon
Polarizability126.02 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA014608
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Wei RB, Xi T, Li J, Wang P, Li FC, Lin YC, Qin S: Lobophorin C and D, new kijanimicin derivatives from a marine sponge-associated actinomycetal strain AZS17. Mar Drugs. 2011 Mar 17;9(3):359-68. doi: 10.3390/md9030359. [PubMed:21556165 ]