NP-MRD: Showing NP-Card for Palmyrrolinone (NP0009906)

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Record Information

Version

2.0

Created at

2021-01-05 19:36:26 UTC

Updated at

2021-07-15 17:04:35 UTC

NP-MRD ID

NP0009906

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Palmyrrolinone

Provided By

NPAtlas

Description

(5S)-1-[(2E,4E)-6-hydroxy-3-methoxyhexa-2,4-dienoyl]-5-methyl-2,5-dihydro-1H-pyrrol-2-one belongs to the class of organic compounds known as n-substituted carboxylic acid imides. N-substituted carboxylic acid imides are compounds comprising an N-substituted carboxylic acid imide group, with the general structure R1N(C(R2)=O)C(R3)=O (R2,R3=H, alkyl, aryl; R1=Anything but H). Palmyrrolinone is found in Hormoscilla. Palmyrrolinone was first documented in 2011 (PMID: 21473610). Based on a literature review very few articles have been published on (5S)-1-[(2E,4E)-6-hydroxy-3-methoxyhexa-2,4-dienoyl]-5-methyl-2,5-dihydro-1H-pyrrol-2-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106533D          

 32 32  0  0  0  0            999 V2000
   -1.8401   -2.9474   -1.2928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3652   -1.8189   -0.6355 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5482   -0.7190   -0.3019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1197    0.3467    0.4768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4141    0.2047    0.8309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0641    1.2759    1.6387 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5116    0.7691    2.8382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3044   -0.7530   -0.7361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6159    0.2990   -0.4635 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2510    1.3084    0.2149 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9852    0.2831   -0.9297 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6094   -0.7113   -1.6863 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0836   -1.8009   -2.1113 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9946   -0.3124   -1.9291 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1791    0.8429   -1.3539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9699    1.3122   -0.6913 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2481    1.3280    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6237   -3.7086   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9799   -3.3173   -0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4999   -2.5934   -2.2994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6714    1.2474    0.8237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9870   -0.6613    0.5446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3902    2.1471    1.7521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9713    1.6265    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2107    1.3250    3.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0165   -1.6430   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289   -0.9045   -2.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1417    1.4120   -1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6251    2.3082   -1.0481 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8703    2.1922    1.0761 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8548    0.4199    1.0125 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3274    1.2427    1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  3  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 11  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  4 21  1  0  0  0  0
  5 22  1  0  0  0  0
  6 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  0  0  0  0
  8 26  1  0  0  0  0
 14 27  1  0  0  0  0
 15 28  1  0  0  0  0
 16 29  1  6  0  0  0
 17 30  1  0  0  0  0
 17 31  1  0  0  0  0
 17 32  1  0  0  0  0
M  END

     RDKit          3D

 32 32  0  0  0  0  0  0  0  0999 V2000
   -1.8401   -2.9474   -1.2928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3652   -1.8189   -0.6355 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5482   -0.7190   -0.3019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1197    0.3467    0.4768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4141    0.2047    0.8309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0641    1.2759    1.6387 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5116    0.7691    2.8382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3044   -0.7530   -0.7361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6159    0.2990   -0.4635 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2510    1.3084    0.2149 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9852    0.2831   -0.9297 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6094   -0.7113   -1.6863 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0836   -1.8009   -2.1113 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9946   -0.3124   -1.9291 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1791    0.8429   -1.3539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9699    1.3122   -0.6913 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2481    1.3280    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6237   -3.7086   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9799   -3.3173   -0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4999   -2.5934   -2.2994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6714    1.2474    0.8237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9870   -0.6613    0.5446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3902    2.1471    1.7521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9713    1.6265    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2107    1.3250    3.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0165   -1.6430   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289   -0.9045   -2.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1417    1.4120   -1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6251    2.3082   -1.0481 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8703    2.1922    1.0761 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8548    0.4199    1.0125 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3274    1.2427    1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  3  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 11  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  4 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
 14 27  1  0
 15 28  1  0
 16 29  1  6
 17 30  1  0
 17 31  1  0
 17 32  1  0
M  END


  Mrv1652306242106533D          

 32 32  0  0  0  0            999 V2000
   -1.8401   -2.9474   -1.2928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3652   -1.8189   -0.6355 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5482   -0.7190   -0.3019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1197    0.3467    0.4768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4141    0.2047    0.8309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0641    1.2759    1.6387 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5116    0.7691    2.8382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3044   -0.7530   -0.7361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6159    0.2990   -0.4635 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2510    1.3084    0.2149 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9852    0.2831   -0.9297 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6094   -0.7113   -1.6863 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0836   -1.8009   -2.1113 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9946   -0.3124   -1.9291 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1791    0.8429   -1.3539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9699    1.3122   -0.6913 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2481    1.3280    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6237   -3.7086   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9799   -3.3173   -0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4999   -2.5934   -2.2994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6714    1.2474    0.8237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9870   -0.6613    0.5446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3902    2.1471    1.7521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9713    1.6265    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2107    1.3250    3.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0165   -1.6430   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289   -0.9045   -2.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1417    1.4120   -1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6251    2.3082   -1.0481 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8703    2.1922    1.0761 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8548    0.4199    1.0125 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3274    1.2427    1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  3  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 11  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  4 21  1  0  0  0  0
  5 22  1  0  0  0  0
  6 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  0  0  0  0
  8 26  1  0  0  0  0
 14 27  1  0  0  0  0
 15 28  1  0  0  0  0
 16 29  1  6  0  0  0
 17 30  1  0  0  0  0
 17 31  1  0  0  0  0
 17 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0009906

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])C(\[H])=C(/[H])\C(\OC([H])([H])[H])=C(\[H])C(=O)N1C(=O)C([H])=C([H])[C@]1([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C12H15NO4/c1-9-5-6-11(15)13(9)12(16)8-10(17-2)4-3-7-14/h3-6,8-9,14H,7H2,1-2H3/b4-3+,10-8+/t9-/m0/s1

> <INCHI_KEY>
VHHVNQCXHWHJGF-VVQVOPMGSA-N

> <FORMULA>
C12H15NO4

> <MOLECULAR_WEIGHT>
237.255

> <EXACT_MASS>
237.100107967

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
24.62179427483263

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5S)-1-[(2E,4E)-6-hydroxy-3-methoxyhexa-2,4-dienoyl]-5-methyl-2,5-dihydro-1H-pyrrol-2-one

> <ALOGPS_LOGP>
0.92

> <JCHEM_LOGP>
-0.18934200966666698

> <ALOGPS_LOGS>
-2.14

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.607126696358378

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.47540851680329

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5332523795714126

> <JCHEM_POLAR_SURFACE_AREA>
66.84

> <JCHEM_REFRACTIVITY>
66.2399

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.71e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5S)-1-[(2E,4E)-6-hydroxy-3-methoxyhexa-2,4-dienoyl]-5-methyl-5H-pyrrol-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 32 32  0  0  0  0  0  0  0  0999 V2000
   -1.8401   -2.9474   -1.2928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3652   -1.8189   -0.6355 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5482   -0.7190   -0.3019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1197    0.3467    0.4768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4141    0.2047    0.8309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0641    1.2759    1.6387 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5116    0.7691    2.8382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3044   -0.7530   -0.7361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6159    0.2990   -0.4635 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2510    1.3084    0.2149 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9852    0.2831   -0.9297 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6094   -0.7113   -1.6863 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0836   -1.8009   -2.1113 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9946   -0.3124   -1.9291 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1791    0.8429   -1.3539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9699    1.3122   -0.6913 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2481    1.3280    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6237   -3.7086   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9799   -3.3173   -0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4999   -2.5934   -2.2994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6714    1.2474    0.8237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9870   -0.6613    0.5446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3902    2.1471    1.7521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9713    1.6265    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2107    1.3250    3.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0165   -1.6430   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289   -0.9045   -2.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1417    1.4120   -1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6251    2.3082   -1.0481 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8703    2.1922    1.0761 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8548    0.4199    1.0125 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3274    1.2427    1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  3  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 11  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  4 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
 14 27  1  0
 15 28  1  0
 16 29  1  6
 17 30  1  0
 17 31  1  0
 17 32  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.840  -2.947  -1.293  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.365  -1.819  -0.636  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.548  -0.719  -0.302  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.120   0.347   0.477  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.414   0.205   0.831  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.064   1.276   1.639  0.00  0.00           C+0
HETATM    7  O   UNK     0      -4.512   0.769   2.838  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.304  -0.753  -0.736  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.616   0.299  -0.464  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.251   1.308   0.215  0.00  0.00           O+0
HETATM   11  N   UNK     0       1.985   0.283  -0.930  0.00  0.00           N+0
HETATM   12  C   UNK     0       2.609  -0.711  -1.686  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.084  -1.801  -2.111  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.995  -0.312  -1.929  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.179   0.843  -1.354  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.970   1.312  -0.691  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.248   1.328   0.800  0.00  0.00           C+0
HETATM   18  H   UNK     0      -2.624  -3.709  -1.471  0.00  0.00           H+0
HETATM   19  H   UNK     0      -0.980  -3.317  -0.734  0.00  0.00           H+0
HETATM   20  H   UNK     0      -1.500  -2.593  -2.299  0.00  0.00           H+0
HETATM   21  H   UNK     0      -1.671   1.247   0.824  0.00  0.00           H+0
HETATM   22  H   UNK     0      -3.987  -0.661   0.545  0.00  0.00           H+0
HETATM   23  H   UNK     0      -3.390   2.147   1.752  0.00  0.00           H+0
HETATM   24  H   UNK     0      -4.971   1.627   1.079  0.00  0.00           H+0
HETATM   25  H   UNK     0      -5.211   1.325   3.260  0.00  0.00           H+0
HETATM   26  H   UNK     0       0.017  -1.643  -1.334  0.00  0.00           H+0
HETATM   27  H   UNK     0       4.729  -0.905  -2.501  0.00  0.00           H+0
HETATM   28  H   UNK     0       5.142   1.412  -1.362  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.625   2.308  -1.048  0.00  0.00           H+0
HETATM   30  H   UNK     0       3.870   2.192   1.076  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.855   0.420   1.012  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.327   1.243   1.398  0.00  0.00           H+0
CONECT    1    2   18   19   20                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5   21                                                  
CONECT    5    4    6   22                                                  
CONECT    6    5    7   23   24                                             
CONECT    7    6   25                                                       
CONECT    8    3    9   26                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   16                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   27                                                  
CONECT   15   14   16   28                                                  
CONECT   16   15   17   11   29                                             
CONECT   17   16   30   31   32                                             
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    1                                                            
CONECT   21    4                                                            
CONECT   22    5                                                            
CONECT   23    6                                                            
CONECT   24    6                                                            
CONECT   25    7                                                            
CONECT   26    8                                                            
CONECT   27   14                                                            
CONECT   28   15                                                            
CONECT   29   16                                                            
CONECT   30   17                                                            
CONECT   31   17                                                            
CONECT   32   17                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   64    0
END

RDKit          3D

32 32  0  0  0  0  0  0  0  0999 V2000
   -1.8401   -2.9474   -1.2928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3652   -1.8189   -0.6355 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5482   -0.7190   -0.3019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1197    0.3467    0.4768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4141    0.2047    0.8309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0641    1.2759    1.6387 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5116    0.7691    2.8382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3044   -0.7530   -0.7361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6159    0.2990   -0.4635 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2510    1.3084    0.2149 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9852    0.2831   -0.9297 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6094   -0.7113   -1.6863 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0836   -1.8009   -2.1113 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9946   -0.3124   -1.9291 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1791    0.8429   -1.3539 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9699    1.3122   -0.6913 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2481    1.3280    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6237   -3.7086   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9799   -3.3173   -0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4999   -2.5934   -2.2994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6714    1.2474    0.8237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9870   -0.6613    0.5446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3902    2.1471    1.7521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9713    1.6265    1.0785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2107    1.3250    3.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0165   -1.6430   -1.3340 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289   -0.9045   -2.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1417    1.4120   -1.3617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6251    2.3082   -1.0481 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8703    2.1922    1.0761 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8548    0.4199    1.0125 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3274    1.2427    1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  3  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 11  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  4 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
 14 27  1  0
 15 28  1  0
 16 29  1  6
 17 30  1  0
 17 31  1  0
 17 32  1  0
M  END

View in JSmol View NMR Assignments View DFT Assignments 3D Conformers

Synonyms

Not Available

Chemical Formula

C₁₂H₁₅NO₄

Average Mass

237.2550 Da

Monoisotopic Mass

237.10011 Da

IUPAC Name

(5S)-1-[(2E,4E)-6-hydroxy-3-methoxyhexa-2,4-dienoyl]-5-methyl-2,5-dihydro-1H-pyrrol-2-one

Traditional Name

(5S)-1-[(2E,4E)-6-hydroxy-3-methoxyhexa-2,4-dienoyl]-5-methyl-5H-pyrrol-2-one

CAS Registry Number

Not Available

SMILES

CO\C(\C=C\CO)=C\C(=O)N1[C@@H](C)C=CC1=O

InChI Identifier

InChI=1S/C12H15NO4/c1-9-5-6-11(15)13(9)12(16)8-10(17-2)4-3-7-14/h3-6,8-9,14H,7H2,1-2H3/b4-3+,10-8+/t9-/m0/s1

InChI Key

VHHVNQCXHWHJGF-VVQVOPMGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hormoscilla	NPAtlas	21473610

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-substituted carboxylic acid imides. N-substituted carboxylic acid imides are compounds comprising an N-substituted carboxylic acid imide group, with the general structure R1N(C(R2)=O)C(R3)=O (R2,R3=H, alkyl, aryl; R1=Anything but H).

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Carboxylic acid derivatives

Direct Parent

N-substituted carboxylic acid imides

Alternative Parents

Substituents

Carboxylic acid imide, n-substituted
Dicarboximide
Pyrroline
Vinylogous ester
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Carbonyl group
Primary alcohol
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Alcohol
Organic oxide
Organopnictogen compound
Organic oxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

dicarboximide (CHEBI:67608 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.92	ALOGPS
logP	-0.19	ChemAxon
logS	-2.1	ALOGPS
pKa (Strongest Acidic)	10.48	ChemAxon
pKa (Strongest Basic)	-2.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	66.84 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	66.24 m³·mol⁻¹	ChemAxon
Polarizability	24.62 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA004504

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26398520

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53355894

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Pereira AR, Etzbach L, Engene N, Muller R, Gerwick WH: Molluscicidal metabolites from an assemblage of Palmyra Atoll cyanobacteria. J Nat Prod. 2011 May 27;74(5):1175-81. doi: 10.1021/np200106b. Epub 2011 Apr 7. [PubMed:21473610 ]

Showing NP-Card for Palmyrrolinone (NP0009906)

MOL for NP0009906 (Palmyrrolinone)

3D MOL for NP0009906 (Palmyrrolinone)

3D SDF for NP0009906 (Palmyrrolinone)

3D-SDF for NP0009906 (Palmyrrolinone)

PDB for NP0009906 (Palmyrrolinone)

3D PDB for NP0009906 (Palmyrrolinone)

SMILES for NP0009906 (Palmyrrolinone)

INCHI for NP0009906 (Palmyrrolinone)

Structure for NP0009906 (Palmyrrolinone)

3D Structure for NP0009906 (Palmyrrolinone)