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Record Information
Version1.0
Created at2021-01-05 19:33:37 UTC
Updated at2021-07-15 17:04:23 UTC
NP-MRD IDNP0009833
Secondary Accession NumbersNone
Natural Product Identification
Common NameGrisemycin
Provided ByNPAtlasNPAtlas Logo
Description2-[(2-{[2-({2-[({1-[(2Z)-2-{[2-(dimethylamino)-1-hydroxypropylidene]amino}but-2-enoyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxypropylidene}amino)-1-hydroxy-3-methylbutylidene]amino}-1-hydroxypropylidene)amino]-N-{1-[(1-{[(2R)-1-{[1-({[(2-hydroxy-1-{[(1E)-1-{[(2R)-2-methyl-1-{[(2Z)-5,8,11-trihydroxy-9-(2-methylpropyl)-6-(propan-2-yl)-1-thia-4,7,10-triazacyclotrideca-2,4,7,10-tetraen-12-yl]-C-hydroxycarbonimidoyl}butyl]-C-hydroxycarbonimidoyl}prop-1-en-1-yl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-3-(C-hydroxycarbonimidoyl)propyl]-C-hydroxycarbonimidoyl}-2-methylbutyl]-C-hydroxycarbonimidoyl}-2-methylpropyl)-C-hydroxycarbonimidoyl]-2-phenylethyl}pentanediimidic acid belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues. Grisemycin is found in Streptomyces and Streptomyces griseus. It was first documented in 2011 (PMID: 21421760). Based on a literature review very few articles have been published on 2-[(2-{[2-({2-[({1-[(2Z)-2-{[2-(dimethylamino)-1-hydroxypropylidene]amino}but-2-enoyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxypropylidene}amino)-1-hydroxy-3-methylbutylidene]amino}-1-hydroxypropylidene)amino]-N-{1-[(1-{[(2R)-1-{[1-({[(2-hydroxy-1-{[(1E)-1-{[(2R)-2-methyl-1-{[(2Z)-5,8,11-trihydroxy-9-(2-methylpropyl)-6-(propan-2-yl)-1-thia-4,7,10-triazacyclotrideca-2,4,7,10-tetraen-12-yl]-C-hydroxycarbonimidoyl}butyl]-C-hydroxycarbonimidoyl}prop-1-en-1-yl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-3-(C-hydroxycarbonimidoyl)propyl]-C-hydroxycarbonimidoyl}-2-methylbutyl]-C-hydroxycarbonimidoyl}-2-methylpropyl)-C-hydroxycarbonimidoyl]-2-phenylethyl}pentanediimidic acid.
Structure
Data?1621576156
Synonyms
ValueSource
2-[(2-{[2-({2-[({1-[(2Z)-2-{[2-(dimethylamino)-1-hydroxypropylidene]amino}but-2-enoyl]pyrrolidin-2-yl}(hydroxy)methylidene)amino]-1-hydroxypropylidene}amino)-1-hydroxy-3-methylbutylidene]amino}-1-hydroxypropylidene)amino]-N-{1-[(1-{[(2R)-1-{[1-({[(2-hydroxy-1-{[(1E)-1-{[(2R)-2-methyl-1-{[(2Z)-5,8,11-trihydroxy-9-(2-methylpropyl)-6-(propan-2-yl)-1-thia-4,7,10-triazacyclotrideca-2,4,7,10-tetraen-12-yl]-C-hydroxycarbonimidoyl}butyl]-C-hydroxycarbonimidoyl}prop-1-en-1-yl]-C-hydroxycarbonimidoyl}ethyl)-C-hydroxycarbonimidoyl]methyl}-C-hydroxycarbonimidoyl)-3-(C-hydroxycarbonimidoyl)propyl]-C-hydroxycarbonimidoyl}-2-methylbutyl]-C-hydroxycarbonimidoyl}-2-methylpropyl)-C-hydroxycarbonimidoyl]-2-phenylethyl}pentanediimidateGenerator
Chemical FormulaC86H137N21O21S
Average Mass1833.2300 Da
Monoisotopic Mass1832.00186 Da
IUPAC Name2-[(3R)-2-(2-{2-[4-carbamoyl-2-(2-{2-[2-({1-[(2Z)-2-[2-(dimethylamino)propanamido]but-2-enoyl]pyrrolidin-2-yl}formamido)propanamido]-3-methylbutanamido}propanamido)butanamido]-3-phenylpropanamido}-3-methylbutanamido)-3-methylpentanamido]-N-{[(2-hydroxy-1-{[(1E)-1-{[(2R)-2-methyl-1-{[(2Z)-9-(2-methylpropyl)-5,8,11-trioxo-6-(propan-2-yl)-1-thia-4,7,10-triazacyclotridec-2-en-12-yl]carbamoyl}butyl]carbamoyl}prop-1-en-1-yl]carbamoyl}ethyl)carbamoyl]methyl}pentanediamide
Traditional Name2-[(3R)-2-(2-{2-[4-carbamoyl-2-(2-{2-[2-({1-[(2Z)-2-[2-(dimethylamino)propanamido]but-2-enoyl]pyrrolidin-2-yl}formamido)propanamido]-3-methylbutanamido}propanamido)butanamido]-3-phenylpropanamido}-3-methylbutanamido)-3-methylpentanamido]-N-{[(2-hydroxy-1-{[(1E)-1-{[(2R)-1-{[(2Z)-6-isopropyl-9-(2-methylpropyl)-5,8,11-trioxo-1-thia-4,7,10-triazacyclotridec-2-en-12-yl]carbamoyl}-2-methylbutyl]carbamoyl}prop-1-en-1-yl]carbamoyl}ethyl)carbamoyl]methyl}pentanediamide
CAS Registry NumberNot Available
SMILES
CC[C@@H](C)C(NC(=O)C(NC(=O)C(CC1=CC=CC=C1)NC(=O)C(CCC(N)=O)NC(=O)C(C)NC(=O)C(NC(=O)C(C)NC(=O)C1CCCN1C(=O)C(\NC(=O)C(C)N(C)C)=C\C)C(C)C)C(C)C)C(=O)NC(CCC(N)=O)C(=O)NCC(=O)NC(CO)C(=O)N\C(=C\C)C(=O)NC([C@H](C)CC)C(=O)NC1CS\C=C/NC(=O)C(NC(=O)C(CC(C)C)NC1=O)C(C)C
InChI Identifier
InChI=1S/C86H137N21O21S/c1-20-47(13)68(85(127)100-60-42-129-37-35-89-81(123)65(44(7)8)102-76(118)57(38-43(5)6)98-79(60)121)104-74(116)53(22-3)94-78(120)59(41-108)93-64(111)40-90-73(115)55(31-33-62(87)109)97-84(126)69(48(14)21-2)105-83(125)67(46(11)12)103-77(119)58(39-52-28-25-24-26-29-52)99-75(117)56(32-34-63(88)110)96-70(112)49(15)92-82(124)66(45(9)10)101-71(113)50(16)91-80(122)61-30-27-36-107(61)86(128)54(23-4)95-72(114)51(17)106(18)19/h22-26,28-29,35,37,43-51,55-61,65-69,108H,20-21,27,30-34,36,38-42H2,1-19H3,(H2,87,109)(H2,88,110)(H,89,123)(H,90,115)(H,91,122)(H,92,124)(H,93,111)(H,94,120)(H,95,114)(H,96,112)(H,97,126)(H,98,121)(H,99,117)(H,100,127)(H,101,113)(H,102,118)(H,103,119)(H,104,116)(H,105,125)/b37-35-,53-22+,54-23-/t47-,48-,49?,50?,51?,55?,56?,57?,58?,59?,60?,61?,65?,66?,67?,68?,69?/m1/s1
InChI KeyOIQYGWMODDNMOB-PTYYYPKJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces griseusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues.
KingdomOrganic compounds
Super ClassOrganic Polymers
ClassPolypeptides
Sub ClassNot Available
Direct ParentPolypeptides
Alternative Parents
Substituents
  • Polypeptide
  • Cyclic alpha peptide
  • Phenylalanine or derivatives
  • Glutamine or derivatives
  • Isoleucine or derivatives
  • Valine or derivatives
  • Proline or derivatives
  • Macrolactam
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Serine or derivatives
  • Alanine or derivatives
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Amphetamine or derivatives
  • N-acylpyrrolidine
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • Benzenoid
  • Monocyclic benzene moiety
  • Fatty amide
  • Fatty acyl
  • N-acyl-amine
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Thioenolether
  • Tertiary amine
  • Secondary carboxylic acid amide
  • Tertiary aliphatic amine
  • Primary carboxylic acid amide
  • Amino acid or derivatives
  • Carboxamide group
  • Lactam
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Azacycle
  • Organic oxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organic oxide
  • Primary alcohol
  • Amine
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Alcohol
  • Organic nitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.65ALOGPS
logP-4.3ChemAxon
logS-1.7ALOGPS
pKa (Strongest Acidic)10.82ChemAxon
pKa (Strongest Basic)7.56ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count20ChemAxon
Polar Surface Area624.66 ŲChemAxon
Rotatable Bond Count48ChemAxon
Refractivity475.99 m³·mol⁻¹ChemAxon
Polarizability192.5 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA024684
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound145720583
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Claesen J, Bibb MJ: Biosynthesis and regulation of grisemycin, a new member of the linaridin family of ribosomally synthesized peptides produced by Streptomyces griseus IFO 13350. J Bacteriol. 2011 May;193(10):2510-6. doi: 10.1128/JB.00171-11. Epub 2011 Mar 18. [PubMed:21421760 ]