NP-MRD: Showing NP-Card for Xenorhabdin 9 (NP0009804)

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Record Information

Version

2.0

Created at

2021-01-05 19:23:37 UTC

Updated at

2021-07-15 17:04:18 UTC

NP-MRD ID

NP0009804

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Xenorhabdin 9

Provided By

NPAtlas

Description

Xenorhabdin 9 belongs to the class of organic compounds known as n-arylamides. These are organic compounds that contain a carboxamide group that is N-linked to a aryl group. They have the generic structure RC(=O)N(R')H, R = organyl group and R'= aryl group. Xenorhabdin 9 is found in Pseudoalteromonas. Based on a literature review very few articles have been published on Xenorhabdin 9.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106533D          

 49 50  0  0  0  0            999 V2000
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    6.6260    1.1543   -0.3249 C   0  0  1  0  0  0  0  0  0  0  0  0
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    1.9613   -1.1290    0.9063 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242106533D          

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 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 15  1  0  0  0  0
 20 16  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
  2 27  1  0  0  0  0
  2 28  1  0  0  0  0
  3 29  1  0  0  0  0
  3 30  1  0  0  0  0
  4 31  1  0  0  0  0
  4 32  1  0  0  0  0
  5 33  1  0  0  0  0
  5 34  1  0  0  0  0
  6 35  1  0  0  0  0
  6 36  1  0  0  0  0
  7 37  1  0  0  0  0
  7 38  1  0  0  0  0
  8 39  1  0  0  0  0
  8 40  1  0  0  0  0
  9 41  1  0  0  0  0
  9 42  1  0  0  0  0
 10 43  1  0  0  0  0
 10 44  1  0  0  0  0
 11 45  1  0  0  0  0
 11 46  1  0  0  0  0
 14 47  1  0  0  0  0
 19 48  1  0  0  0  0
 21 49  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0009804

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N(C(=O)C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])C1=C2SSC([H])=C2N([H])C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C17H26N2O2S2/c1-2-3-4-5-6-7-8-9-10-11-14(20)19-15-16-13(12-22-23-16)18-17(15)21/h12H,2-11H2,1H3,(H,18,21)(H,19,20)

> <INCHI_KEY>
KGVXTHCWNSHYRJ-UHFFFAOYSA-N

> <FORMULA>
C17H26N2O2S2

> <MOLECULAR_WEIGHT>
354.53

> <EXACT_MASS>
354.143570433

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
40.473219535832925

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
N-{5-oxo-4H,5H-[1,2]dithiolo[4,3-b]pyrrol-6-yl}dodecanamide

> <ALOGPS_LOGP>
4.83

> <JCHEM_LOGP>
3.9504911510000005

> <ALOGPS_LOGS>
-4.69

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.908723542671748

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.736492965194277

> <JCHEM_PKA_STRONGEST_BASIC>
-4.950503623878765

> <JCHEM_POLAR_SURFACE_AREA>
58.2

> <JCHEM_REFRACTIVITY>
101.48569999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.29e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-{5-oxo-4H-[1,2]dithiolo[4,3-b]pyrrol-6-yl}dodecanamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 49 50  0  0  0  0  0  0  0  0999 V2000
    8.1277    1.3301   -0.1565 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6260    1.1543   -0.3249 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1983   -0.2394    0.0216 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7190   -0.4494   -0.1360 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9108    0.4591    0.7376 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4136    0.2493    0.5714 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9613   -1.1290    0.9063 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4700   -1.2352    0.7427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0758   -0.9409   -0.6692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4488   -1.0784   -0.8317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1940   -0.1292    0.0646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6483   -0.3247   -0.1568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0689   -1.1907   -0.9995 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5555    0.4711    0.5881 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9420    0.2910    0.3831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7417    0.9710   -0.5554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4959    2.1746   -1.7453 S   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4811    2.2382   -2.3752 S   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0321    1.0470   -1.2850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0865    0.5100   -0.4547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0430   -0.4373    0.5490 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8045   -0.5612    1.0302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4158   -1.3405    1.9560 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4284    2.1595   -0.8192 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6053    0.4012   -0.5339 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3995    1.5070    0.8998 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0747    1.8818    0.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3826    1.3921   -1.3850 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4454   -0.4254    1.0947 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7135   -1.0158   -0.5547 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4665   -1.5110    0.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4042   -0.3679   -1.2045 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0899    1.5238    0.5228 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1554    0.2149    1.8049 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9146    0.9772    1.2448 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1603    0.4993   -0.4848 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4855   -1.8416    0.2000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2746   -1.4599    1.9196 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0827   -2.2367    1.0541 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0253   -0.4297    1.3930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5521   -1.6431   -1.3512 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2814    0.1260   -0.9385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6410   -0.8659   -1.9009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7576   -2.1281   -0.6641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9519    0.9221   -0.1367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9867   -0.4288    1.1293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1958    1.1594    1.2585 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1156    0.7501   -1.2818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8379   -1.0002    0.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 15  1  0
 20 16  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  3 30  1  0
  4 31  1  0
  4 32  1  0
  5 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
  7 37  1  0
  7 38  1  0
  8 39  1  0
  8 40  1  0
  9 41  1  0
  9 42  1  0
 10 43  1  0
 10 44  1  0
 11 45  1  0
 11 46  1  0
 14 47  1  0
 19 48  1  0
 21 49  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       8.128   1.330  -0.157  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.626   1.154  -0.325  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.198  -0.239   0.022  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.719  -0.449  -0.136  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.911   0.459   0.738  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.414   0.249   0.571  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.961  -1.129   0.906  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.470  -1.235   0.743  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.076  -0.941  -0.669  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.449  -1.078  -0.832  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.194  -0.129   0.065  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.648  -0.325  -0.157  0.00  0.00           C+0
HETATM   13  O   UNK     0      -4.069  -1.191  -1.000  0.00  0.00           O+0
HETATM   14  N   UNK     0      -4.556   0.471   0.588  0.00  0.00           N+0
HETATM   15  C   UNK     0      -5.942   0.291   0.383  0.00  0.00           C+0
HETATM   16  C   UNK     0      -6.742   0.971  -0.555  0.00  0.00           C+0
HETATM   17  S   UNK     0      -6.496   2.175  -1.745  0.00  0.00           S+0
HETATM   18  S   UNK     0      -8.481   2.238  -2.375  0.00  0.00           S+0
HETATM   19  C   UNK     0      -9.032   1.047  -1.285  0.00  0.00           C+0
HETATM   20  C   UNK     0      -8.086   0.510  -0.455  0.00  0.00           C+0
HETATM   21  N   UNK     0      -8.043  -0.437   0.549  0.00  0.00           N+0
HETATM   22  C   UNK     0      -6.805  -0.561   1.030  0.00  0.00           C+0
HETATM   23  O   UNK     0      -6.416  -1.341   1.956  0.00  0.00           O+0
HETATM   24  H   UNK     0       8.428   2.159  -0.819  0.00  0.00           H+0
HETATM   25  H   UNK     0       8.605   0.401  -0.534  0.00  0.00           H+0
HETATM   26  H   UNK     0       8.399   1.507   0.900  0.00  0.00           H+0
HETATM   27  H   UNK     0       6.075   1.882   0.290  0.00  0.00           H+0
HETATM   28  H   UNK     0       6.383   1.392  -1.385  0.00  0.00           H+0
HETATM   29  H   UNK     0       6.445  -0.425   1.095  0.00  0.00           H+0
HETATM   30  H   UNK     0       6.713  -1.016  -0.555  0.00  0.00           H+0
HETATM   31  H   UNK     0       4.466  -1.511   0.151  0.00  0.00           H+0
HETATM   32  H   UNK     0       4.404  -0.368  -1.204  0.00  0.00           H+0
HETATM   33  H   UNK     0       4.090   1.524   0.523  0.00  0.00           H+0
HETATM   34  H   UNK     0       4.155   0.215   1.805  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.915   0.977   1.245  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.160   0.499  -0.485  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.486  -1.842   0.200  0.00  0.00           H+0
HETATM   38  H   UNK     0       2.275  -1.460   1.920  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.083  -2.237   1.054  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.025  -0.430   1.393  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.552  -1.643  -1.351  0.00  0.00           H+0
HETATM   42  H   UNK     0       0.281   0.126  -0.939  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.641  -0.866  -1.901  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.758  -2.128  -0.664  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.952   0.922  -0.137  0.00  0.00           H+0
HETATM   46  H   UNK     0      -1.987  -0.429   1.129  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.196   1.159   1.258  0.00  0.00           H+0
HETATM   48  H   UNK     0     -10.116   0.750  -1.282  0.00  0.00           H+0
HETATM   49  H   UNK     0      -8.838  -1.000   0.913  0.00  0.00           H+0
CONECT    1    2   24   25   26                                             
CONECT    2    1    3   27   28                                             
CONECT    3    2    4   29   30                                             
CONECT    4    3    5   31   32                                             
CONECT    5    4    6   33   34                                             
CONECT    6    5    7   35   36                                             
CONECT    7    6    8   37   38                                             
CONECT    8    7    9   39   40                                             
CONECT    9    8   10   41   42                                             
CONECT   10    9   11   43   44                                             
CONECT   11   10   12   45   46                                             
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   47                                                  
CONECT   15   14   16   22                                                  
CONECT   16   15   17   20                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   48                                                  
CONECT   20   19   21   16                                                  
CONECT   21   20   22   49                                                  
CONECT   22   21   23   15                                                  
CONECT   23   22                                                            
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    2                                                            
CONECT   28    2                                                            
CONECT   29    3                                                            
CONECT   30    3                                                            
CONECT   31    4                                                            
CONECT   32    4                                                            
CONECT   33    5                                                            
CONECT   34    5                                                            
CONECT   35    6                                                            
CONECT   36    6                                                            
CONECT   37    7                                                            
CONECT   38    7                                                            
CONECT   39    8                                                            
CONECT   40    8                                                            
CONECT   41    9                                                            
CONECT   42    9                                                            
CONECT   43   10                                                            
CONECT   44   10                                                            
CONECT   45   11                                                            
CONECT   46   11                                                            
CONECT   47   14                                                            
CONECT   48   19                                                            
CONECT   49   21                                                            
MASTER        0    0    0    0    0    0    0    0   49    0  100    0
END

RDKit          3D

49 50  0  0  0  0  0  0  0  0999 V2000
    8.1277    1.3301   -0.1565 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6260    1.1543   -0.3249 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1983   -0.2394    0.0216 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7190   -0.4494   -0.1360 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9108    0.4591    0.7376 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4136    0.2493    0.5714 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9613   -1.1290    0.9063 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4700   -1.2352    0.7427 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0758   -0.9409   -0.6692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4488   -1.0784   -0.8317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1940   -0.1292    0.0646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6483   -0.3247   -0.1568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0689   -1.1907   -0.9995 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5555    0.4711    0.5881 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9420    0.2910    0.3831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7417    0.9710   -0.5554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4959    2.1746   -1.7453 S   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4811    2.2382   -2.3752 S   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0321    1.0470   -1.2850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0865    0.5100   -0.4547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0430   -0.4373    0.5490 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8045   -0.5612    1.0302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4158   -1.3405    1.9560 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4284    2.1595   -0.8192 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6053    0.4012   -0.5339 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3995    1.5070    0.8998 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0747    1.8818    0.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3826    1.3921   -1.3850 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4454   -0.4254    1.0947 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7135   -1.0158   -0.5547 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4665   -1.5110    0.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4042   -0.3679   -1.2045 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0899    1.5238    0.5228 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1554    0.2149    1.8049 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9146    0.9772    1.2448 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1603    0.4993   -0.4848 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4855   -1.8416    0.2000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2746   -1.4599    1.9196 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0827   -2.2367    1.0541 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0253   -0.4297    1.3930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5521   -1.6431   -1.3512 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2814    0.1260   -0.9385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6410   -0.8659   -1.9009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7576   -2.1281   -0.6641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9519    0.9221   -0.1367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9867   -0.4288    1.1293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1958    1.1594    1.2585 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1156    0.7501   -1.2818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8379   -1.0002    0.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 15  1  0
 20 16  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  2 28  1  0
  3 29  1  0
  3 30  1  0
  4 31  1  0
  4 32  1  0
  5 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
  7 37  1  0
  7 38  1  0
  8 39  1  0
  8 40  1  0
  9 41  1  0
  9 42  1  0
 10 43  1  0
 10 44  1  0
 11 45  1  0
 11 46  1  0
 14 47  1  0
 19 48  1  0
 21 49  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
N-{5-hydroxy-[1,2]dithiolo[4,3-b]pyrrol-6-yl}dodecanimidate	Generator

Chemical Formula

C₁₇H₂₆N₂O₂S₂

Average Mass

354.5300 Da

Monoisotopic Mass

354.14357 Da

IUPAC Name

N-{5-oxo-4H,5H-[1,2]dithiolo[4,3-b]pyrrol-6-yl}dodecanamide

Traditional Name

N-{5-oxo-4H-[1,2]dithiolo[4,3-b]pyrrol-6-yl}dodecanamide

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCC(=O)NC1=C2SSC=C2NC1=O

InChI Identifier

InChI=1S/C17H26N2O2S2/c1-2-3-4-5-6-7-8-9-10-11-14(20)19-15-16-13(12-22-23-16)18-17(15)21/h12H,2-11H2,1H3,(H,18,21)(H,19,20)

InChI Key

KGVXTHCWNSHYRJ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pseudoalteromonas	NPAtlas	21381163

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-arylamides. These are organic compounds that contain a carboxamide group that is N-linked to a aryl group. They have the generic structure RC(=O)N(R')H, R = organyl group and R'= aryl group.

Kingdom

Organic compounds

Super Class

Organic nitrogen compounds

Class

Organonitrogen compounds

Sub Class

N-arylamides

Direct Parent

N-arylamides

Alternative Parents

Substituents

N-arylamide
Fatty amide
Substituted pyrrole
Fatty acyl
Pyrrole
Heteroaromatic compound
1,2-dithiole
Dithiole
Carboxamide group
Lactam
Secondary carboxylic acid amide
Carboxylic acid derivative
Azacycle
Organoheterocyclic compound
Organic oxide
Organooxygen compound
Carbonyl group
Organic oxygen compound
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.83	ALOGPS
logP	3.95	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	8.74	ChemAxon
pKa (Strongest Basic)	-5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	58.2 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	101.49 m³·mol⁻¹	ChemAxon
Polarizability	40.47 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA010974

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78435360

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

56833883

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Xenorhabdin 9 (NP0009804)

MOL for NP0009804 (Xenorhabdin 9)

3D MOL for NP0009804 (Xenorhabdin 9)

3D SDF for NP0009804 (Xenorhabdin 9)

3D-SDF for NP0009804 (Xenorhabdin 9)

PDB for NP0009804 (Xenorhabdin 9)

3D PDB for NP0009804 (Xenorhabdin 9)

SMILES for NP0009804 (Xenorhabdin 9)

INCHI for NP0009804 (Xenorhabdin 9)

Structure for NP0009804 (Xenorhabdin 9)

3D Structure for NP0009804 (Xenorhabdin 9)