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Record Information
Version1.0
Created at2021-01-05 19:19:44 UTC
Updated at2021-07-15 17:04:10 UTC
NP-MRD IDNP0009759
Secondary Accession NumbersNone
Natural Product Identification
Common NameDivergolide A
Provided ByNPAtlasNPAtlas Logo
Description(1S,4R,7S,10Z,20S,21S)-4-ethyl-13,17-dihydroxy-7-(1-hydroxy-3-methylbut-2-en-1-yl)-10,21-dimethyl-8,24,26-trioxa-14-azatetracyclo[13.8.2.1¹,²⁰.0¹⁹,²⁵]Hexacosa-5,10,13,15,17,19(25)-hexaene-9,22-dione belongs to the class of organic compounds known as 1-hydroxy-2-unsubstituted benzenoids. These are phenols that are unsubstituted at the 2-position. Divergolide A is found in Streptomyces sp. It was first documented in 2011 (PMID: 21308920). Based on a literature review very few articles have been published on (1S,4R,7S,10Z,20S,21S)-4-ethyl-13,17-dihydroxy-7-(1-hydroxy-3-methylbut-2-en-1-yl)-10,21-dimethyl-8,24,26-trioxa-14-azatetracyclo[13.8.2.1¹,²⁰.0¹⁹,²⁵]Hexacosa-5,10,13,15,17,19(25)-hexaene-9,22-dione.
Structure
Data?1621576134
SynonymsNot Available
Chemical FormulaC31H39NO8
Average Mass553.6520 Da
Monoisotopic Mass553.26757 Da
IUPAC Name(1S,4R,5Z,7S,10Z,20S,21S)-4-ethyl-17-hydroxy-7-[(1S)-1-hydroxy-3-methylbut-2-en-1-yl]-10,21-dimethyl-8,24,26-trioxa-14-azatetracyclo[13.8.2.1^{1,20}.0^{19,25}]hexacosa-5,10,15,17,19(25)-pentaene-9,13,22-trione
Traditional Name(1S,4R,5Z,7S,10Z,20S,21S)-4-ethyl-17-hydroxy-7-[(1S)-1-hydroxy-3-methylbut-2-en-1-yl]-10,21-dimethyl-8,24,26-trioxa-14-azatetracyclo[13.8.2.1^{1,20}.0^{19,25}]hexacosa-5,10,15,17,19(25)-pentaene-9,13,22-trione
CAS Registry NumberNot Available
SMILES
CC[C@@H]1CC[C@]23CC(=O)[C@@H](C)[C@H](O2)C2=CC(O)=CC(NC(=O)C\C=C(C)/C(=O)O[C@@H](\C=C/1)C(O)C=C(C)C)=C2O3
InChI Identifier
InChI=1S/C31H39NO8/c1-6-20-8-9-26(24(34)13-17(2)3)38-30(37)18(4)7-10-27(36)32-23-15-21(33)14-22-28-19(5)25(35)16-31(39-28,12-11-20)40-29(22)23/h7-9,13-15,19-20,24,26,28,33-34H,6,10-12,16H2,1-5H3,(H,32,36)/b9-8-,18-7-/t19-,20+,24?,26+,28+,31+/m1/s1
InChI KeyNXQKNJIQGBLGMU-QHDNJAFJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1-hydroxy-2-unsubstituted benzenoids. These are phenols that are unsubstituted at the 2-position.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenols
Sub Class1-hydroxy-2-unsubstituted benzenoids
Direct Parent1-hydroxy-2-unsubstituted benzenoids
Alternative Parents
Substituents
  • 1-hydroxy-2-unsubstituted benzenoid
  • Ketal
  • Oxane
  • Cyclic carboximidic acid
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Cyclic ketone
  • Secondary alcohol
  • Lactone
  • Ketone
  • Carboxylic acid ester
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Acetal
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.65ALOGPS
logP5.47ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)9.42ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area131.39 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity152.56 m³·mol⁻¹ChemAxon
Polarizability59.44 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA024805
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ding L, Maier A, Fiebig HH, Gorls H, Lin WH, Peschel G, Hertweck C: Divergolides A-D from a mangrove endophyte reveal an unparalleled plasticity in ansa-macrolide biosynthesis. Angew Chem Int Ed Engl. 2011 Feb 11;50(7):1630-4. doi: 10.1002/anie.201006165. Epub 2011 Jan 11. [PubMed:21308920 ]