NP-MRD: Showing NP-Card for Microdiplodiasol (NP0009724)

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Record Information

Version

2.0

Created at

2021-01-05 19:18:06 UTC

Updated at

2021-07-15 17:04:04 UTC

NP-MRD ID

NP0009724

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Microdiplodiasol

Provided By

NPAtlas

Description

Microdiplodiasol belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. Microdiplodiasol is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Microdiplodiasol is found in Microdiplodia sp. Based on a literature review very few articles have been published on microdiplodiasol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106523D          

 40 42  0  0  0  0            999 V2000
   -1.2133   -0.6020    1.7671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0021    0.4194    0.6736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3001    0.9174    0.8037 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3660    0.2158    0.2743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6759    0.6182    0.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7336   -0.0754    0.0284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1232    0.3667    0.3337 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0628    1.4875    1.1553 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5299   -1.1663   -0.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2359   -1.6016   -1.0699 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1012   -2.7005   -1.8765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1751   -0.9041   -0.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2012   -1.2965   -0.8097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4933   -2.4568   -1.1438 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2431   -0.2496   -0.6634 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0757    0.6493   -1.7035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6094   -0.8366   -0.7124 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7146   -2.0322    0.0257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    0.1357   -0.3609 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3570    1.0714    0.7473 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9564    1.5805    0.7700 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6782    2.4304   -0.3017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2568   -0.8276    1.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6812   -0.3064    2.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7374   -1.5505    1.4000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8225    1.4835    1.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6303   -0.4281    0.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6187    0.5974   -0.6117 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5072    2.2622    0.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3673   -1.7127   -1.1803 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2627   -3.0937   -2.1724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8478    0.2320   -2.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7917   -1.1557   -1.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6214   -2.0623    0.4011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9037    0.7418   -1.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5838   -0.4499   -0.0610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6184    0.6743    1.7561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0284    1.9725    0.6241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7760    2.1027    1.7096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4446    2.4866   -0.9410 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  6  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  6  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 15  2  1  0  0  0  0
 21  2  1  0  0  0  0
 12  4  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  5 26  1  0  0  0  0
  7 27  1  0  0  0  0
  7 28  1  0  0  0  0
  8 29  1  0  0  0  0
  9 30  1  0  0  0  0
 11 31  1  0  0  0  0
 16 32  1  0  0  0  0
 17 33  1  6  0  0  0
 18 34  1  0  0  0  0
 19 35  1  0  0  0  0
 19 36  1  0  0  0  0
 20 37  1  0  0  0  0
 20 38  1  0  0  0  0
 21 39  1  1  0  0  0
 22 40  1  0  0  0  0
M  END

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
   -1.2133   -0.6020    1.7671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0021    0.4194    0.6736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3001    0.9174    0.8037 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3660    0.2158    0.2743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6759    0.6182    0.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7336   -0.0754    0.0284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1232    0.3667    0.3337 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0628    1.4875    1.1553 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5299   -1.1663   -0.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2359   -1.6016   -1.0699 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1012   -2.7005   -1.8765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1751   -0.9041   -0.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2012   -1.2965   -0.8097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4933   -2.4568   -1.1438 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2431   -0.2496   -0.6634 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0757    0.6493   -1.7035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6094   -0.8366   -0.7124 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7146   -2.0322    0.0257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    0.1357   -0.3609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3570    1.0714    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9564    1.5805    0.7700 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6782    2.4304   -0.3017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2568   -0.8276    1.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6812   -0.3064    2.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7374   -1.5505    1.4000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8225    1.4835    1.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6303   -0.4281    0.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6187    0.5974   -0.6117 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5072    2.2622    0.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3673   -1.7127   -1.1803 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2627   -3.0937   -2.1724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8478    0.2320   -2.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7917   -1.1557   -1.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6214   -2.0623    0.4011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9037    0.7418   -1.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5838   -0.4499   -0.0610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6184    0.6743    1.7561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0284    1.9725    0.6241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7760    2.1027    1.7096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4446    2.4866   -0.9410 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  6  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 15  2  1  0
 21  2  1  0
 12  4  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  5 26  1  0
  7 27  1  0
  7 28  1  0
  8 29  1  0
  9 30  1  0
 11 31  1  0
 16 32  1  0
 17 33  1  6
 18 34  1  0
 19 35  1  0
 19 36  1  0
 20 37  1  0
 20 38  1  0
 21 39  1  1
 22 40  1  0
M  END


  Mrv1652306242106523D          

 40 42  0  0  0  0            999 V2000
   -1.2133   -0.6020    1.7671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0021    0.4194    0.6736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3001    0.9174    0.8037 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3660    0.2158    0.2743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6759    0.6182    0.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7336   -0.0754    0.0284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1232    0.3667    0.3337 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0628    1.4875    1.1553 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5299   -1.1663   -0.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2359   -1.6016   -1.0699 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1012   -2.7005   -1.8765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1751   -0.9041   -0.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2012   -1.2965   -0.8097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4933   -2.4568   -1.1438 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2431   -0.2496   -0.6634 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0757    0.6493   -1.7035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6094   -0.8366   -0.7124 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7146   -2.0322    0.0257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    0.1357   -0.3609 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3570    1.0714    0.7473 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9564    1.5805    0.7700 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6782    2.4304   -0.3017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2568   -0.8276    1.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6812   -0.3064    2.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7374   -1.5505    1.4000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8225    1.4835    1.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6303   -0.4281    0.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6187    0.5974   -0.6117 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5072    2.2622    0.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3673   -1.7127   -1.1803 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2627   -3.0937   -2.1724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8478    0.2320   -2.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7917   -1.1557   -1.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6214   -2.0623    0.4011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9037    0.7418   -1.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5838   -0.4499   -0.0610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6184    0.6743    1.7561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0284    1.9725    0.6241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7760    2.1027    1.7096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4446    2.4866   -0.9410 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  6  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  6  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 15  2  1  0  0  0  0
 21  2  1  0  0  0  0
 12  4  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  5 26  1  0  0  0  0
  7 27  1  0  0  0  0
  7 28  1  0  0  0  0
  8 29  1  0  0  0  0
  9 30  1  0  0  0  0
 11 31  1  0  0  0  0
 16 32  1  0  0  0  0
 17 33  1  6  0  0  0
 18 34  1  0  0  0  0
 19 35  1  0  0  0  0
 19 36  1  0  0  0  0
 20 37  1  0  0  0  0
 20 38  1  0  0  0  0
 21 39  1  1  0  0  0
 22 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0009724

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(O[C@@]3(C([H])([H])[H])[C@@]([H])(O[H])C([H])([H])C([H])([H])[C@]([H])(O[H])[C@]3(O[H])C2=O)=C([H])C(=C1[H])C([H])([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H18O7/c1-14-10(18)2-3-11(19)15(14,21)13(20)12-8(17)4-7(6-16)5-9(12)22-14/h4-5,10-11,16-19,21H,2-3,6H2,1H3/t10-,11-,14-,15-/m0/s1

> <INCHI_KEY>
SCOQIJBVVKZZHE-GVARAGBVSA-N

> <FORMULA>
C15H18O7

> <MOLECULAR_WEIGHT>
310.302

> <EXACT_MASS>
310.10525292

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
30.06788799549966

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4S,4aS,9aR)-1,4,8,9a-tetrahydroxy-6-(hydroxymethyl)-4a-methyl-2,3,4,4a,9,9a-hexahydro-1H-xanthen-9-one

> <ALOGPS_LOGP>
-0.82

> <JCHEM_LOGP>
-0.26308046933333296

> <ALOGPS_LOGS>
-1.05

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.005788623915631

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.462337864761905

> <JCHEM_PKA_STRONGEST_BASIC>
-2.910467064839226

> <JCHEM_POLAR_SURFACE_AREA>
127.45

> <JCHEM_REFRACTIVITY>
74.93839999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.78e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5S,8S,8aR,10aS)-1,5,8,8a-tetrahydroxy-3-(hydroxymethyl)-10a-methyl-5,6,7,8-tetrahydroxanthen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
   -1.2133   -0.6020    1.7671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0021    0.4194    0.6736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3001    0.9174    0.8037 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3660    0.2158    0.2743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6759    0.6182    0.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7336   -0.0754    0.0284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1232    0.3667    0.3337 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0628    1.4875    1.1553 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5299   -1.1663   -0.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2359   -1.6016   -1.0699 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1012   -2.7005   -1.8765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1751   -0.9041   -0.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2012   -1.2965   -0.8097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4933   -2.4568   -1.1438 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2431   -0.2496   -0.6634 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0757    0.6493   -1.7035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6094   -0.8366   -0.7124 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7146   -2.0322    0.0257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    0.1357   -0.3609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3570    1.0714    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9564    1.5805    0.7700 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6782    2.4304   -0.3017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2568   -0.8276    1.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6812   -0.3064    2.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7374   -1.5505    1.4000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8225    1.4835    1.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6303   -0.4281    0.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6187    0.5974   -0.6117 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5072    2.2622    0.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3673   -1.7127   -1.1803 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2627   -3.0937   -2.1724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8478    0.2320   -2.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7917   -1.1557   -1.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6214   -2.0623    0.4011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9037    0.7418   -1.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5838   -0.4499   -0.0610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6184    0.6743    1.7561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0284    1.9725    0.6241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7760    2.1027    1.7096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4446    2.4866   -0.9410 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  6  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 15  2  1  0
 21  2  1  0
 12  4  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  5 26  1  0
  7 27  1  0
  7 28  1  0
  8 29  1  0
  9 30  1  0
 11 31  1  0
 16 32  1  0
 17 33  1  6
 18 34  1  0
 19 35  1  0
 19 36  1  0
 20 37  1  0
 20 38  1  0
 21 39  1  1
 22 40  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.213  -0.602   1.767  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.002   0.419   0.674  0.00  0.00           C+0
HETATM    3  O   UNK     0       0.300   0.917   0.804  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.366   0.216   0.274  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.676   0.618   0.551  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.734  -0.075   0.028  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.123   0.367   0.334  0.00  0.00           C+0
HETATM    8  O   UNK     0       5.063   1.488   1.155  0.00  0.00           O+0
HETATM    9  C   UNK     0       3.530  -1.166  -0.768  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.236  -1.602  -1.070  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.101  -2.700  -1.877  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.175  -0.904  -0.544  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.201  -1.297  -0.810  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.493  -2.457  -1.144  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.243  -0.250  -0.663  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.076   0.649  -1.704  0.00  0.00           O+0
HETATM   17  C   UNK     0      -2.609  -0.837  -0.712  0.00  0.00           C+0
HETATM   18  O   UNK     0      -2.715  -2.032   0.026  0.00  0.00           O+0
HETATM   19  C   UNK     0      -3.677   0.136  -0.361  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.357   1.071   0.747  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.956   1.581   0.770  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.678   2.430  -0.302  0.00  0.00           O+0
HETATM   23  H   UNK     0      -2.257  -0.828   1.975  0.00  0.00           H+0
HETATM   24  H   UNK     0      -0.681  -0.306   2.674  0.00  0.00           H+0
HETATM   25  H   UNK     0      -0.737  -1.551   1.400  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.822   1.484   1.183  0.00  0.00           H+0
HETATM   27  H   UNK     0       5.630  -0.428   0.915  0.00  0.00           H+0
HETATM   28  H   UNK     0       5.619   0.597  -0.612  0.00  0.00           H+0
HETATM   29  H   UNK     0       5.507   2.262   0.762  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.367  -1.713  -1.180  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.263  -3.094  -2.172  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.848   0.232  -2.555  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.792  -1.156  -1.781  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.621  -2.062   0.401  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.904   0.742  -1.273  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.584  -0.450  -0.061  0.00  0.00           H+0
HETATM   37  H   UNK     0      -3.618   0.674   1.756  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.028   1.972   0.624  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.776   2.103   1.710  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.445   2.487  -0.941  0.00  0.00           H+0
CONECT    1    2   23   24   25                                             
CONECT    2    1    3   15   21                                             
CONECT    3    2    4                                                       
CONECT    4    3    5   12                                                  
CONECT    5    4    6   26                                                  
CONECT    6    5    7    9                                                  
CONECT    7    6    8   27   28                                             
CONECT    8    7   29                                                       
CONECT    9    6   10   30                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10   31                                                       
CONECT   12   10   13    4                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17    2                                             
CONECT   16   15   32                                                       
CONECT   17   15   18   19   33                                             
CONECT   18   17   34                                                       
CONECT   19   17   20   35   36                                             
CONECT   20   19   21   37   38                                             
CONECT   21   20   22    2   39                                             
CONECT   22   21   40                                                       
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    5                                                            
CONECT   27    7                                                            
CONECT   28    7                                                            
CONECT   29    8                                                            
CONECT   30    9                                                            
CONECT   31   11                                                            
CONECT   32   16                                                            
CONECT   33   17                                                            
CONECT   34   18                                                            
CONECT   35   19                                                            
CONECT   36   19                                                            
CONECT   37   20                                                            
CONECT   38   20                                                            
CONECT   39   21                                                            
CONECT   40   22                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   84    0
END

RDKit          3D

40 42  0  0  0  0  0  0  0  0999 V2000
   -1.2133   -0.6020    1.7671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0021    0.4194    0.6736 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3001    0.9174    0.8037 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3660    0.2158    0.2743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6759    0.6182    0.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7336   -0.0754    0.0284 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1232    0.3667    0.3337 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0628    1.4875    1.1553 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5299   -1.1663   -0.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2359   -1.6016   -1.0699 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1012   -2.7005   -1.8765 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1751   -0.9041   -0.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2012   -1.2965   -0.8097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4933   -2.4568   -1.1438 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2431   -0.2496   -0.6634 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0757    0.6493   -1.7035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6094   -0.8366   -0.7124 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7146   -2.0322    0.0257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6768    0.1357   -0.3609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3570    1.0714    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9564    1.5805    0.7700 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6782    2.4304   -0.3017 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2568   -0.8276    1.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6812   -0.3064    2.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7374   -1.5505    1.4000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8225    1.4835    1.1832 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6303   -0.4281    0.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6187    0.5974   -0.6117 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5072    2.2622    0.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3673   -1.7127   -1.1803 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2627   -3.0937   -2.1724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8478    0.2320   -2.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7917   -1.1557   -1.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6214   -2.0623    0.4011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9037    0.7418   -1.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5838   -0.4499   -0.0610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6184    0.6743    1.7561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0284    1.9725    0.6241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7760    2.1027    1.7096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4446    2.4866   -0.9410 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  6  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 15  2  1  0
 21  2  1  0
 12  4  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  5 26  1  0
  7 27  1  0
  7 28  1  0
  8 29  1  0
  9 30  1  0
 11 31  1  0
 16 32  1  0
 17 33  1  6
 18 34  1  0
 19 35  1  0
 19 36  1  0
 20 37  1  0
 20 38  1  0
 21 39  1  1
 22 40  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₅H₁₈O₇

Average Mass

310.3020 Da

Monoisotopic Mass

310.10525 Da

IUPAC Name

(1S,4S,4aS,9aR)-1,4,8,9a-tetrahydroxy-6-(hydroxymethyl)-4a-methyl-2,3,4,4a,9,9a-hexahydro-1H-xanthen-9-one

Traditional Name

(5S,8S,8aR,10aS)-1,5,8,8a-tetrahydroxy-3-(hydroxymethyl)-10a-methyl-5,6,7,8-tetrahydroxanthen-9-one

CAS Registry Number

Not Available

SMILES

C[C@@]12OC3=C(C(O)=CC(CO)=C3)C(=O)[C@@]1(O)[C@@H](O)CC[C@@H]2O

InChI Identifier

InChI=1S/C15H18O7/c1-14-10(18)2-3-11(19)15(14,21)13(20)12-8(17)4-7(6-16)5-9(12)22-14/h4-5,10-11,16-19,21H,2-3,6H2,1H3/t10-,11-,14-,15-/m0/s1

InChI Key

SCOQIJBVVKZZHE-GVARAGBVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Microdiplodia sp.	NPAtlas	21244021

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Xanthones

Alternative Parents

Substituents

Xanthone
Chromone
Aryl alkyl ketone
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Cyclic alcohol
Tertiary alcohol
Vinylogous acid
Ketone
Secondary alcohol
Polyol
Ether
Oxacycle
Organic oxygen compound
Primary alcohol
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Aromatic alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

tertiary alcohol (CHEBI:68283 )
secondary alcohol (CHEBI:68283 )
phenols (CHEBI:68283 )
benzyl alcohols (CHEBI:68283 )
xanthones (CHEBI:68283 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.82	ALOGPS
logP	-0.26	ChemAxon
logS	-1	ALOGPS
pKa (Strongest Acidic)	8.46	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	127.45 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	74.94 m³·mol⁻¹	ChemAxon
Polarizability	30.07 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA011133

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26343794

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

52937070

PDB ID

Not Available

ChEBI ID

68283

Good Scents ID

Not Available

References

General References

Showing NP-Card for Microdiplodiasol (NP0009724)

MOL for NP0009724 (Microdiplodiasol)

3D MOL for NP0009724 (Microdiplodiasol)

3D SDF for NP0009724 (Microdiplodiasol)

3D-SDF for NP0009724 (Microdiplodiasol)

PDB for NP0009724 (Microdiplodiasol)

3D PDB for NP0009724 (Microdiplodiasol)

SMILES for NP0009724 (Microdiplodiasol)

INCHI for NP0009724 (Microdiplodiasol)

Structure for NP0009724 (Microdiplodiasol)

3D Structure for NP0009724 (Microdiplodiasol)