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Record Information
Version2.0
Created at2021-01-05 19:12:27 UTC
Updated at2021-07-15 17:03:42 UTC
NP-MRD IDNP0009588
Secondary Accession NumbersNone
Natural Product Identification
Common NameCB-182350
Provided ByNPAtlasNPAtlas Logo
DescriptionCB-182350 belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. CB-182350 is found in Streptomyces fradiae. Based on a literature review very few articles have been published on CB-182350.
Structure
Data?1621576079
Synonyms
ValueSource
(4R)-4-{[(1S)-1-{[(3S,9R,15S,18R,21S,24S,30S,31R)-18-(4-aminobutyl)-3-(butan-2-yl)-15-[carboxy(hydroxy)methyl]-6-(2-carboxyethyl)-21-(carboxymethyl)-5,8,11,14,17,20,23,26-octahydroxy-9-[(C-hydroxycarbonimidoyl)methyl]-24,28,31-trimethyl-2,29-dioxo-1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriaconta-4,7,10,13,16,19,22,25-octaen-30-yl]-C-hydroxycarbonimidoyl}-2-hydroxy-2-(C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}-4-{[(2S)-1-hydroxy-2-[(1-hydroxy-8-methyldecylidene)amino]-3-(1H-indol-3-yl)propylidene]amino}butanoateGenerator
Chemical FormulaC72H109N17O27
Average Mass1644.7560 Da
Monoisotopic Mass1643.76788 Da
IUPAC Name(4R)-4-{[(1S,2R)-1-{[(3S,6S,9R,15S,18R,21S,24S,30S,31R)-18-(4-aminobutyl)-3-[(2R)-butan-2-yl]-9-(carbamoylmethyl)-15-[(S)-carboxy(hydroxy)methyl]-6-(2-carboxyethyl)-21-(carboxymethyl)-24,28,31-trimethyl-2,5,8,11,14,17,20,23,26,29-decaoxo-1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriacontan-30-yl]carbamoyl}-2-carbamoyl-2-hydroxyethyl]carbamoyl}-4-[(2S)-3-(1H-indol-3-yl)-2-[(8R)-8-methyldecanamido]propanamido]butanoic acid
Traditional Name(4R)-4-{[(1S,2R)-1-{[(3S,6S,9R,15S,18R,21S,24S,30S,31R)-18-(4-aminobutyl)-3-[(2R)-butan-2-yl]-9-(carbamoylmethyl)-15-[(S)-carboxy(hydroxy)methyl]-6-(2-carboxyethyl)-21-(carboxymethyl)-24,28,31-trimethyl-2,5,8,11,14,17,20,23,26,29-decaoxo-1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriacontan-30-yl]carbamoyl}-2-carbamoyl-2-hydroxyethyl]carbamoyl}-4-[(2S)-3-(1H-indol-3-yl)-2-[(8R)-8-methyldecanamido]propanamido]butanoic acid
CAS Registry NumberNot Available
SMILES
CCC(C)CCCCCCC(=O)N[C@@H](CC1=CNC2=C1C=CC=C2)C(=O)N[C@H](CCC(O)=O)C(=O)N[C@@H](C(O)C(N)=O)C(=O)N[C@H]1[C@@H](C)OC(=O)[C@@H](NC(=O)C(CCC(O)=O)NC(=O)[C@@H](CC(N)=O)NC(=O)CNC(=O)[C@@H](NC(=O)[C@@H](CCCCN)NC(=O)[C@H](CC(O)=O)NC(=O)[C@H](C)NC(=O)CN(C)C1=O)C(O)C(O)=O)C(C)CC
InChI Identifier
InChI=1S/C72H109N17O27/c1-8-34(3)18-12-10-11-13-22-48(91)79-44(28-38-31-76-40-20-15-14-19-39(38)40)65(107)82-43(24-26-52(96)97)64(106)87-56(58(100)60(75)102)69(111)86-55-37(6)116-72(115)54(35(4)9-2)85-63(105)42(23-25-51(94)95)83-66(108)45(29-47(74)90)80-49(92)32-77-68(110)57(59(101)71(113)114)88-62(104)41(21-16-17-27-73)81-67(109)46(30-53(98)99)84-61(103)36(5)78-50(93)33-89(7)70(55)112/h14-15,19-20,31,34-37,41-46,54-59,76,100-101H,8-13,16-18,21-30,32-33,73H2,1-7H3,(H2,74,90)(H2,75,102)(H,77,110)(H,78,93)(H,79,91)(H,80,92)(H,81,109)(H,82,107)(H,83,108)(H,84,103)(H,85,105)(H,86,111)(H,87,106)(H,88,104)(H,94,95)(H,96,97)(H,98,99)(H,113,114)/t34?,35?,36-,37+,41+,42?,43+,44-,45+,46-,54-,55-,56-,57-,58?,59?/m0/s1
InChI KeySMRPHNHMRZNNET-WKZBHRJLSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces fradiaeNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassDepsipeptides
Direct ParentCyclic depsipeptides
Alternative Parents
Substituents
  • Cyclic depsipeptide
  • Pentacarboxylic acid or derivatives
  • Glutamic acid or derivatives
  • Asparagine or derivatives
  • Macrolide lactam
  • Alpha-amino acid ester
  • Macrolactam
  • Macrolide
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Triptan
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • Alpha-hydroxy acid
  • Fatty amide
  • Hydroxy acid
  • Fatty acyl
  • Monosaccharide
  • N-acyl-amine
  • Benzenoid
  • Substituted pyrrole
  • Tertiary carboxylic acid amide
  • Heteroaromatic compound
  • Pyrrole
  • Amino acid
  • Carboxylic acid ester
  • Carboxamide group
  • Amino acid or derivatives
  • Lactam
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Primary carboxylic acid amide
  • Lactone
  • Azacycle
  • Carboxylic acid
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Oxacycle
  • Organooxygen compound
  • Organic nitrogen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Amine
  • Primary amine
  • Organopnictogen compound
  • Primary aliphatic amine
  • Organic oxide
  • Alcohol
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-9.9ChemAxon
pKa (Strongest Acidic)2.83ChemAxon
pKa (Strongest Basic)10.17ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count27ChemAxon
Hydrogen Donor Count22ChemAxon
Polar Surface Area713.46 ŲChemAxon
Rotatable Bond Count37ChemAxon
Refractivity395.93 m³·mol⁻¹ChemAxon
Polarizability168.26 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA007111
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78445403
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139585098
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References