NP-MRD: Showing NP-Card for JBIR-79 (NP0009504)

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Record Information

Version

2.0

Created at

2020-12-09 06:52:24 UTC

Updated at

2021-07-15 17:03:26 UTC

NP-MRD ID

NP0009504

Secondary Accession Numbers

None

Natural Product Identification

Common Name

JBIR-79

Provided By

NPAtlas

Description

(2R,3S,4aS,12bR)-8,10-dihydroxy-9-(1-hydroxy-2-methylbut-3-en-2-yl)-2,5,5-trimethyl-7,12-dioxo-2,3,4,4a,5,7,12,12b-octahydro-1H-6-oxatetraphen-3-yl acetate belongs to the class of organic compounds known as naphthopyranones. Naphthopyranones are compounds containing a naphthopyran skeleton where a ring carbon bears a carboxylic acid group. Naphthtopyran is made up of the pyran ring fused to a naphthalene ring system. JBIR-79 is found in Streptomyces. JBIR-79 was first documented in 2010 (PMID: 20959848). Based on a literature review very few articles have been published on (2R,3S,4aS,12bR)-8,10-dihydroxy-9-(1-hydroxy-2-methylbut-3-en-2-yl)-2,5,5-trimethyl-7,12-dioxo-2,3,4,4a,5,7,12,12b-octahydro-1H-6-oxatetraphen-3-yl acetate.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106363D          

 67 70  0  0  0  0            999 V2000
   -8.1833    0.7709    0.5778 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8803    0.9656    0.5678 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0459    0.2884   -0.4825 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.3851    1.1028   -1.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5288   -1.0820   -0.7655 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.5339   -1.8619    0.3623 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6088    0.4346   -0.1992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0620    1.7251   -0.1120 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9180    2.7901   -0.2802 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7372    1.9400    0.1294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562    0.8686    0.3026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3505   -0.4055    0.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7032   -0.6111   -0.0224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1523   -1.8681   -0.0951 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9492    0.3361    1.0143 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -8.8074    1.2541    1.3329 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.6738    3.7487   -0.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4702   -4.1977    0.7414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9438   -3.3468    0.1932 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  3  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
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 33 64  1  0  0  0  0
 34 65  1  0  0  0  0
 34 66  1  0  0  0  0
 34 67  1  0  0  0  0
M  END

     RDKit          3D

 67 70  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242106363D          

 67 70  0  0  0  0            999 V2000
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   -6.8803    0.9656    0.5678 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.5288   -1.0820   -0.7655 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.5339   -1.8619    0.3623 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6088    0.4346   -0.1992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0620    1.7251   -0.1120 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9180    2.7901   -0.2802 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7372    1.9400    0.1294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562    0.8686    0.3026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3505   -0.4055    0.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7032   -0.6111   -0.0224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1523   -1.8681   -0.0951 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3842   -1.4809    0.4136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7784   -2.6708    0.3534 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0537   -1.2018    0.6757 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5203    0.0240    0.7495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4398    1.1037    0.5614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0796    2.3236    0.6153 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9492    0.3361    1.0143 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5699    1.2286   -0.0014 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8706    0.8743   -0.5734 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6633    2.1678   -0.8443 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7822   -0.0093    0.2084 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9622    0.6462    0.6314 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2175    0.2528    0.2090 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4029    0.9920    0.6989 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2653   -0.7245   -0.5768 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1665   -0.7148    1.3805 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6929   -0.9259    1.3038 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2615   -2.0996    0.4900 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3304   -1.9720   -0.9743 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1079   -3.2893    0.9127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8833   -2.3305    0.8395 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.8677   -1.5101   -1.5768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5293   -1.0345   -1.2622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5553   -1.3223    1.1912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6738    3.7487   -0.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3168    2.9368    0.1963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8861   -2.7688   -0.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9170    0.9309    1.9816 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8100    1.3062   -0.8406 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6045    2.3018    0.3603 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7249    0.4721   -1.6235 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9550    2.6402    0.1221 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0630    2.9014   -1.3928 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5747    1.9648   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1300   -0.8245   -0.4726 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3012    0.3279    0.6759 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2144    1.3871    1.7160 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6554    1.8671    0.0658 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3701   -0.1483    2.3372 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6453   -1.7078    1.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3907   -1.2244    2.3618 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7137   -2.8139   -1.4117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3296   -2.0879   -1.4310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8732   -1.0554   -1.3942 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3992   -3.2692    1.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4702   -4.1977    0.7414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9438   -3.3468    0.1932 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  3  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
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 12 13  2  0  0  0  0
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 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
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 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  6  0  0  0
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 32 35  1  0  0  0  0
 13  7  1  0  0  0  0
 35 17  1  0  0  0  0
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 31 21  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  2 38  1  0  0  0  0
  4 39  1  0  0  0  0
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 34 66  1  0  0  0  0
 34 67  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0009504

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(C(O[H])=C2C(=O)C3=C(C(=O)C2=C1[H])[C@]1([H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@@]([H])(OC(=O)C([H])([H])[H])C([H])([H])[C@]1([H])C(O3)(C([H])([H])[H])C([H])([H])[H])[C@@](C([H])=C([H])[H])(C([H])([H])[H])C([H])([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C27H32O8/c1-7-27(6,11-28)21-17(30)9-15-19(23(21)32)24(33)25-20(22(15)31)14-8-12(2)18(34-13(3)29)10-16(14)26(4,5)35-25/h7,9,12,14,16,18,28,30,32H,1,8,10-11H2,2-6H3/t12-,14-,16+,18+,27-/m1/s1

> <INCHI_KEY>
FQVIUWLPHLZGEM-DELUNJIVSA-N

> <FORMULA>
C27H32O8

> <MOLECULAR_WEIGHT>
484.545

> <EXACT_MASS>
484.20971799

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
52.28750830840508

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4aS,12bR)-8,10-dihydroxy-9-[(2S)-1-hydroxy-2-methylbut-3-en-2-yl]-2,5,5-trimethyl-7,12-dioxo-2,3,4,4a,5,7,12,12b-octahydro-1H-6-oxatetraphen-3-yl acetate

> <ALOGPS_LOGP>
3.33

> <JCHEM_LOGP>
3.096743832

> <ALOGPS_LOGS>
-4.13

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.562056466914509

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.956679379383784

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8688677595578334

> <JCHEM_POLAR_SURFACE_AREA>
130.35999999999999

> <JCHEM_REFRACTIVITY>
129.9454

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.62e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4aS,12bR)-8,10-dihydroxy-9-[(2S)-1-hydroxy-2-methylbut-3-en-2-yl]-2,5,5-trimethyl-7,12-dioxo-1,2,3,4,4a,12b-hexahydro-6-oxatetraphen-3-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 67 70  0  0  0  0  0  0  0  0999 V2000
   -8.1833    0.7709    0.5778 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8803    0.9656    0.5678 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.3851    1.1028   -1.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5288   -1.0820   -0.7655 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5339   -1.8619    0.3623 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6088    0.4346   -0.1992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0620    1.7251   -0.1120 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9180    2.7901   -0.2802 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7372    1.9400    0.1294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562    0.8686    0.3026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3505   -0.4055    0.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7032   -0.6111   -0.0224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1523   -1.8681   -0.0951 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7784   -2.6708    0.3534 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.5203    0.0240    0.7495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4398    1.1037    0.5614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0796    2.3236    0.6153 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5699    1.2286   -0.0014 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8706    0.8743   -0.5734 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6633    2.1678   -0.8443 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7822   -0.0093    0.2084 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9622    0.6462    0.6314 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2175    0.2528    0.2090 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4029    0.9920    0.6989 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6929   -0.9259    1.3038 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2615   -2.0996    0.4900 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3304   -1.9720   -0.9743 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1079   -3.2893    0.9127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8833   -2.3305    0.8395 O   0  0  0  0  0  0  0  0  0  0  0  0
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    8.2144    1.3871    1.7160 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6554    1.8671    0.0658 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3701   -0.1483    2.3372 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6453   -1.7078    1.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3907   -1.2244    2.3618 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7137   -2.8139   -1.4117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3296   -2.0879   -1.4310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8732   -1.0554   -1.3942 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3992   -3.2692    1.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4702   -4.1977    0.7414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9438   -3.3468    0.1932 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  3  2  1  1
  3  4  1  0
  3  5  1  0
  5  6  1  0
  3  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 12 15  1  0
 15 16  2  0
 15 17  1  0
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 18 19  1  0
 19 20  2  0
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 32 33  1  6
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  1 36  1  0
  1 37  1  0
  2 38  1  0
  4 39  1  0
  4 40  1  0
  4 41  1  0
  5 42  1  0
  5 43  1  0
  6 44  1  0
  9 45  1  0
 10 46  1  0
 14 47  1  0
 21 48  1  1
 22 49  1  0
 22 50  1  0
 23 51  1  6
 24 52  1  0
 24 53  1  0
 24 54  1  0
 25 55  1  6
 28 56  1  0
 28 57  1  0
 28 58  1  0
 30 59  1  0
 30 60  1  0
 31 61  1  1
 33 62  1  0
 33 63  1  0
 33 64  1  0
 34 65  1  0
 34 66  1  0
 34 67  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -8.183   0.771   0.578  0.00  0.00           C+0
HETATM    2  C   UNK     0      -6.880   0.966   0.568  0.00  0.00           C+0
HETATM    3  C   UNK     0      -6.046   0.288  -0.483  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.385   1.103  -1.768  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.529  -1.082  -0.766  0.00  0.00           C+0
HETATM    6  O   UNK     0      -6.534  -1.862   0.362  0.00  0.00           O+0
HETATM    7  C   UNK     0      -4.609   0.435  -0.199  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.062   1.725  -0.112  0.00  0.00           C+0
HETATM    9  O   UNK     0      -4.918   2.790  -0.280  0.00  0.00           O+0
HETATM   10  C   UNK     0      -2.737   1.940   0.129  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.856   0.869   0.303  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.350  -0.406   0.225  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.703  -0.611  -0.022  0.00  0.00           C+0
HETATM   14  O   UNK     0      -4.152  -1.868  -0.095  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.384  -1.481   0.414  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.778  -2.671   0.353  0.00  0.00           O+0
HETATM   17  C   UNK     0       0.054  -1.202   0.676  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.520   0.024   0.750  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.440   1.104   0.561  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.080   2.324   0.615  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.949   0.336   1.014  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.570   1.229  -0.001  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.871   0.874  -0.573  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.663   2.168  -0.844  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.782  -0.009   0.208  0.00  0.00           C+0
HETATM   26  O   UNK     0       5.962   0.646   0.631  0.00  0.00           O+0
HETATM   27  C   UNK     0       7.218   0.253   0.209  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.403   0.992   0.699  0.00  0.00           C+0
HETATM   29  O   UNK     0       7.265  -0.725  -0.577  0.00  0.00           O+0
HETATM   30  C   UNK     0       4.167  -0.715   1.381  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.693  -0.926   1.304  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.261  -2.100   0.490  0.00  0.00           C+0
HETATM   33  C   UNK     0       2.330  -1.972  -0.974  0.00  0.00           C+0
HETATM   34  C   UNK     0       3.108  -3.289   0.913  0.00  0.00           C+0
HETATM   35  O   UNK     0       0.883  -2.330   0.840  0.00  0.00           O+0
HETATM   36  H   UNK     0      -8.807   1.254   1.333  0.00  0.00           H+0
HETATM   37  H   UNK     0      -8.724   0.147  -0.125  0.00  0.00           H+0
HETATM   38  H   UNK     0      -6.446   1.610   1.319  0.00  0.00           H+0
HETATM   39  H   UNK     0      -6.757   2.099  -1.525  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.448   1.236  -2.352  0.00  0.00           H+0
HETATM   41  H   UNK     0      -7.147   0.593  -2.366  0.00  0.00           H+0
HETATM   42  H   UNK     0      -5.868  -1.510  -1.577  0.00  0.00           H+0
HETATM   43  H   UNK     0      -7.529  -1.034  -1.262  0.00  0.00           H+0
HETATM   44  H   UNK     0      -6.555  -1.322   1.191  0.00  0.00           H+0
HETATM   45  H   UNK     0      -4.674   3.749  -0.245  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.317   2.937   0.196  0.00  0.00           H+0
HETATM   47  H   UNK     0      -3.886  -2.769  -0.038  0.00  0.00           H+0
HETATM   48  H   UNK     0       1.917   0.931   1.982  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.810   1.306  -0.841  0.00  0.00           H+0
HETATM   50  H   UNK     0       2.604   2.302   0.360  0.00  0.00           H+0
HETATM   51  H   UNK     0       3.725   0.472  -1.624  0.00  0.00           H+0
HETATM   52  H   UNK     0       4.955   2.640   0.122  0.00  0.00           H+0
HETATM   53  H   UNK     0       4.063   2.901  -1.393  0.00  0.00           H+0
HETATM   54  H   UNK     0       5.575   1.965  -1.418  0.00  0.00           H+0
HETATM   55  H   UNK     0       5.130  -0.825  -0.473  0.00  0.00           H+0
HETATM   56  H   UNK     0       9.301   0.328   0.676  0.00  0.00           H+0
HETATM   57  H   UNK     0       8.214   1.387   1.716  0.00  0.00           H+0
HETATM   58  H   UNK     0       8.655   1.867   0.066  0.00  0.00           H+0
HETATM   59  H   UNK     0       4.370  -0.148   2.337  0.00  0.00           H+0
HETATM   60  H   UNK     0       4.645  -1.708   1.542  0.00  0.00           H+0
HETATM   61  H   UNK     0       2.391  -1.224   2.362  0.00  0.00           H+0
HETATM   62  H   UNK     0       1.714  -2.814  -1.412  0.00  0.00           H+0
HETATM   63  H   UNK     0       3.330  -2.088  -1.431  0.00  0.00           H+0
HETATM   64  H   UNK     0       1.873  -1.055  -1.394  0.00  0.00           H+0
HETATM   65  H   UNK     0       3.399  -3.269   1.962  0.00  0.00           H+0
HETATM   66  H   UNK     0       2.470  -4.198   0.741  0.00  0.00           H+0
HETATM   67  H   UNK     0       3.944  -3.347   0.193  0.00  0.00           H+0
CONECT    1    2   36   37                                                  
CONECT    2    1    3   38                                                  
CONECT    3    2    4    5    7                                             
CONECT    4    3   39   40   41                                             
CONECT    5    3    6   42   43                                             
CONECT    6    5   44                                                       
CONECT    7    3    8   13                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8   45                                                       
CONECT   10    8   11   46                                                  
CONECT   11   10   12   19                                                  
CONECT   12   11   13   15                                                  
CONECT   13   12   14    7                                                  
CONECT   14   13   47                                                       
CONECT   15   12   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   35                                                  
CONECT   18   17   19   21                                                  
CONECT   19   18   20   11                                                  
CONECT   20   19                                                            
CONECT   21   18   22   31   48                                             
CONECT   22   21   23   49   50                                             
CONECT   23   22   24   25   51                                             
CONECT   24   23   52   53   54                                             
CONECT   25   23   26   30   55                                             
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27   56   57   58                                             
CONECT   29   27                                                            
CONECT   30   25   31   59   60                                             
CONECT   31   30   32   21   61                                             
CONECT   32   31   33   34   35                                             
CONECT   33   32   62   63   64                                             
CONECT   34   32   65   66   67                                             
CONECT   35   32   17                                                       
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    2                                                            
CONECT   39    4                                                            
CONECT   40    4                                                            
CONECT   41    4                                                            
CONECT   42    5                                                            
CONECT   43    5                                                            
CONECT   44    6                                                            
CONECT   45    9                                                            
CONECT   46   10                                                            
CONECT   47   14                                                            
CONECT   48   21                                                            
CONECT   49   22                                                            
CONECT   50   22                                                            
CONECT   51   23                                                            
CONECT   52   24                                                            
CONECT   53   24                                                            
CONECT   54   24                                                            
CONECT   55   25                                                            
CONECT   56   28                                                            
CONECT   57   28                                                            
CONECT   58   28                                                            
CONECT   59   30                                                            
CONECT   60   30                                                            
CONECT   61   31                                                            
CONECT   62   33                                                            
CONECT   63   33                                                            
CONECT   64   33                                                            
CONECT   65   34                                                            
CONECT   66   34                                                            
CONECT   67   34                                                            
MASTER        0    0    0    0    0    0    0    0   67    0  140    0
END

RDKit          3D

67 70  0  0  0  0  0  0  0  0999 V2000
   -8.1833    0.7709    0.5778 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8803    0.9656    0.5678 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0459    0.2884   -0.4825 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.3851    1.1028   -1.7684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5288   -1.0820   -0.7655 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5339   -1.8619    0.3623 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6088    0.4346   -0.1992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0620    1.7251   -0.1120 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9180    2.7901   -0.2802 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7372    1.9400    0.1294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562    0.8686    0.3026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3505   -0.4055    0.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7032   -0.6111   -0.0224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1523   -1.8681   -0.0951 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3842   -1.4809    0.4136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7784   -2.6708    0.3534 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0537   -1.2018    0.6757 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5203    0.0240    0.7495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4398    1.1037    0.5614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0796    2.3236    0.6153 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9492    0.3361    1.0143 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5699    1.2286   -0.0014 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8706    0.8743   -0.5734 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6633    2.1678   -0.8443 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7822   -0.0093    0.2084 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9622    0.6462    0.6314 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2175    0.2528    0.2090 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4029    0.9920    0.6989 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2653   -0.7245   -0.5768 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1665   -0.7148    1.3805 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6929   -0.9259    1.3038 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2615   -2.0996    0.4900 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3304   -1.9720   -0.9743 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1079   -3.2893    0.9127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8833   -2.3305    0.8395 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8074    1.2541    1.3329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7240    0.1472   -0.1251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4457    1.6101    1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7566    2.0989   -1.5251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4482    1.2362   -2.3515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1468    0.5928   -2.3659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8677   -1.5101   -1.5768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5293   -1.0345   -1.2622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5553   -1.3223    1.1912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6738    3.7487   -0.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3168    2.9368    0.1963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8861   -2.7688   -0.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9170    0.9309    1.9816 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8100    1.3062   -0.8406 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6045    2.3018    0.3603 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7249    0.4721   -1.6235 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9550    2.6402    0.1221 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0630    2.9014   -1.3928 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5747    1.9648   -1.4180 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1300   -0.8245   -0.4726 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3012    0.3279    0.6759 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2144    1.3871    1.7160 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6554    1.8671    0.0658 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3701   -0.1483    2.3372 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6453   -1.7078    1.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3907   -1.2244    2.3618 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7137   -2.8139   -1.4117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3296   -2.0879   -1.4310 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8732   -1.0554   -1.3942 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3992   -3.2692    1.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4702   -4.1977    0.7414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9438   -3.3468    0.1932 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  3  2  1  1
  3  4  1  0
  3  5  1  0
  5  6  1  0
  3  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 12 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 18 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  2  0
 25 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  1  6
 32 34  1  0
 32 35  1  0
 13  7  1  0
 35 17  1  0
 19 11  1  0
 31 21  1  0
  1 36  1  0
  1 37  1  0
  2 38  1  0
  4 39  1  0
  4 40  1  0
  4 41  1  0
  5 42  1  0
  5 43  1  0
  6 44  1  0
  9 45  1  0
 10 46  1  0
 14 47  1  0
 21 48  1  1
 22 49  1  0
 22 50  1  0
 23 51  1  6
 24 52  1  0
 24 53  1  0
 24 54  1  0
 25 55  1  6
 28 56  1  0
 28 57  1  0
 28 58  1  0
 30 59  1  0
 30 60  1  0
 31 61  1  1
 33 62  1  0
 33 63  1  0
 33 64  1  0
 34 65  1  0
 34 66  1  0
 34 67  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(2R,3S,4AS,12BR)-8,10-dihydroxy-9-(1-hydroxy-2-methylbut-3-en-2-yl)-2,5,5-trimethyl-7,12-dioxo-2,3,4,4a,5,7,12,12b-octahydro-1H-6-oxatetraphen-3-yl acetic acid	Generator

Chemical Formula

C₂₇H₃₂O₈

Average Mass

484.5450 Da

Monoisotopic Mass

484.20972 Da

IUPAC Name

(2R,3S,4aS,12bR)-8,10-dihydroxy-9-[(2S)-1-hydroxy-2-methylbut-3-en-2-yl]-2,5,5-trimethyl-7,12-dioxo-2,3,4,4a,5,7,12,12b-octahydro-1H-6-oxatetraphen-3-yl acetate

Traditional Name

(2R,3S,4aS,12bR)-8,10-dihydroxy-9-[(2S)-1-hydroxy-2-methylbut-3-en-2-yl]-2,5,5-trimethyl-7,12-dioxo-1,2,3,4,4a,12b-hexahydro-6-oxatetraphen-3-yl acetate

CAS Registry Number

Not Available

SMILES

C[C@@H]1C[C@@H]2[C@H](C[C@@H]1OC(C)=O)C(C)(C)OC1=C2C(=O)C2=CC(O)=C(C(O)=C2C1=O)C(C)(CO)C=C

InChI Identifier

InChI=1S/C27H32O8/c1-7-27(6,11-28)21-17(30)9-15-19(23(21)32)24(33)25-20(22(15)31)14-8-12(2)18(34-13(3)29)10-16(14)26(4,5)35-25/h7,9,12,14,16,18,28,30,32H,1,8,10-11H2,2-6H3/t12-,14-,16+,18+,27?/m1/s1

InChI Key

FQVIUWLPHLZGEM-DELUNJIVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	20959848

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthopyranones. Naphthopyranones are compounds containing a naphthopyran skeleton where a ring carbon bears a carboxylic acid group. Naphthtopyran is made up of the pyran ring fused to a naphthalene ring system.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Naphthopyrans

Sub Class

Naphthopyranones

Direct Parent

Naphthopyranones

Alternative Parents

Substituents

Naphthopyranone
Naphthoquinone
Naphthalene
Quinone
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Pyranone
Pyran
Benzenoid
Vinylogous ester
Vinylogous acid
Ketone
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Primary alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.33	ALOGPS
logP	3.1	ChemAxon
logS	-4.1	ALOGPS
pKa (Strongest Acidic)	6.96	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	130.36 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	129.95 m³·mol⁻¹	ChemAxon
Polarizability	52.29 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA004015

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28288363

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

50925566

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Izumikawa M, Nagai A, Hashimoto J, Takagi M, Shin-ya K: Isolation of 2 new naphthablin analogs, JBIR-79 and JBIR-80, from Streptomyces sp. RI24. J Antibiot (Tokyo). 2010 Dec;63(12):729-31. doi: 10.1038/ja.2010.120. Epub 2010 Oct 20. [PubMed:20959848 ]

Showing NP-Card for JBIR-79 (NP0009504)

MOL for NP0009504 (JBIR-79)

3D MOL for NP0009504 (JBIR-79)

3D SDF for NP0009504 (JBIR-79)

3D-SDF for NP0009504 (JBIR-79)

PDB for NP0009504 (JBIR-79)

3D PDB for NP0009504 (JBIR-79)

SMILES for NP0009504 (JBIR-79)

INCHI for NP0009504 (JBIR-79)

Structure for NP0009504 (JBIR-79)

3D Structure for NP0009504 (JBIR-79)