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Record Information
Version1.0
Created at2020-12-09 06:50:43 UTC
Updated at2021-07-15 17:03:21 UTC
NP-MRD IDNP0009472
Secondary Accession NumbersNone
Natural Product Identification
Common NameClifednamide A
Provided ByNPAtlasNPAtlas Logo
Description Clifednamide A is found in Streptomyces sp. It was first documented in 2010 (PMID: 20843016).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC29H36N2O5
Average Mass492.6160 Da
Monoisotopic Mass492.26242 Da
IUPAC Name(3Z,5S,7R,8R,10R,11R,12R,15R,16S,18Z,25S)-11-acetyl-2-hydroxy-10-methyl-21,26-diazapentacyclo[23.2.1.0^{5,16}.0^{7,15}.0^{8,12}]octacosa-1,3,13,18-tetraene-20,27,28-trione
Traditional Name(3Z,5S,7R,8R,10R,11R,12R,15R,16S,18Z,25S)-11-acetyl-2-hydroxy-10-methyl-21,26-diazapentacyclo[23.2.1.0^{5,16}.0^{7,15}.0^{8,12}]octacosa-1,3,13,18-tetraene-20,27,28-trione
CAS Registry NumberNot Available
SMILES
C[C@@H]1C[C@@H]2[C@H]3C[C@H]4\C=C/C(/O)=C5/C(=O)N[C@@H](CCCNC(=O)\C=C/C[C@@H]4[C@H]3C=C[C@H]2[C@@H]1C(C)=O)C5=O
InChI Identifier
InChI=1S/C29H36N2O5/c1-15-13-21-20(26(15)16(2)32)10-9-19-18-5-3-7-25(34)30-12-4-6-23-28(35)27(29(36)31-23)24(33)11-8-17(18)14-22(19)21/h3,7-11,15,17-23,26,33H,4-6,12-14H2,1-2H3,(H,30,34)(H,31,36)/b7-3-,11-8-,27-24-/t15-,17-,18+,19-,20-,21+,22+,23+,26+/m1/s1
InChI KeyRKXLUXSTSOYJOS-LSMNFEEWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2ALOGPS
logP2.33ChemAxon
logS-5.3ALOGPS
pKa (Strongest Acidic)6.83ChemAxon
pKa (Strongest Basic)-0.13ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area112.57 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity140.48 m³·mol⁻¹ChemAxon
Polarizability54.73 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
External LinksNot Available
References
General References
  1. Cao S, Blodgett JA, Clardy J: Targeted discovery of polycyclic tetramate macrolactams from an environmental Streptomyces strain. Org Lett. 2010 Oct 15;12(20):4652-4. doi: 10.1021/ol1020064. [PubMed:20843016 ]