Np mrd loader

Record Information
Version2.0
Created at2020-12-09 06:46:07 UTC
Updated at2021-07-15 17:03:03 UTC
NP-MRD IDNP0009364
Secondary Accession NumbersNone
Natural Product Identification
Common NameLargamide D oxazolidine
Provided ByNPAtlasNPAtlas Logo
DescriptionLargamide D oxazolidine belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Largamide D oxazolidine is found in Lyngbya and Lyngbya confervoides. Based on a literature review very few articles have been published on largamide D oxazolidine.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC56H80BrN9O16
Average Mass1215.2070 Da
Monoisotopic Mass1213.49064 Da
IUPAC Name(2S)-N-[(1S)-1-{[(1S)-1-{[(1S,4S,7S,10R,11S,14S,17S,20R,22S)-4-[(3-bromo-4-hydroxyphenyl)methyl]-3,10,22-trimethyl-14-(2-methylpropyl)-2,5,8,12,15,24-hexaoxo-7-(propan-2-yl)-9,21-dioxa-3,6,13,16,23-pentaazatricyclo[15.5.2.0^{20,23}]tetracosan-11-yl]carbamoyl}-2-methylpropyl]carbamoyl}ethyl]-2-[(2R)-2,3-dihydroxypropanamido]-5-(4-hydroxyphenyl)pentanamide
Traditional Name(2S)-N-[(1S)-1-{[(1S)-1-{[(1S,4S,7S,10R,11S,14S,17S,20R,22S)-4-[(3-bromo-4-hydroxyphenyl)methyl]-7-isopropyl-3,10,22-trimethyl-14-(2-methylpropyl)-2,5,8,12,15,24-hexaoxo-9,21-dioxa-3,6,13,16,23-pentaazatricyclo[15.5.2.0^{20,23}]tetracosan-11-yl]carbamoyl}-2-methylpropyl]carbamoyl}ethyl]-2-[(2R)-2,3-dihydroxypropanamido]-5-(4-hydroxyphenyl)pentanamide
CAS Registry NumberNot Available
SMILES
CC(C)C[C@@H]1NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](C)NC(=O)[C@H](CCCC2=CC=C(O)C=C2)NC(=O)[C@H](O)CO)C(C)C)[C@@H](C)OC(=O)[C@@H](NC(=O)[C@H](CC2=CC(Br)=C(O)C=C2)N(C)C(=O)[C@@H]2[C@H](C)O[C@@H]3CC[C@H](NC1=O)C(=O)N23)C(C)C
InChI Identifier
InChI=1S/C56H80BrN9O16/c1-26(2)22-38-49(73)60-37-19-21-42-66(54(37)78)46(31(9)81-42)55(79)65(10)39(24-33-16-20-40(69)35(57)23-33)50(74)63-44(28(5)6)56(80)82-30(8)45(53(77)61-38)64-52(76)43(27(3)4)62-47(71)29(7)58-48(72)36(59-51(75)41(70)25-67)13-11-12-32-14-17-34(68)18-15-32/h14-18,20,23,26-31,36-39,41-46,67-70H,11-13,19,21-22,24-25H2,1-10H3,(H,58,72)(H,59,75)(H,60,73)(H,61,77)(H,62,71)(H,63,74)(H,64,76)/t29-,30+,31-,36-,37-,38-,39-,41+,42+,43-,44-,45-,46-/m0/s1
InChI KeyACEYNJYKEXLTFZ-XQVAVGLYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
LyngbyaNPAtlas
Lyngbya confervoidesLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassDepsipeptides
Direct ParentCyclic depsipeptides
Alternative Parents
Substituents
  • Cyclic depsipeptide
  • Macrolide lactam
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid ester
  • Valine or derivatives
  • Macrolactam
  • Alpha-amino acid amide
  • Alanine or derivatives
  • Phenylbutylamine
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • 2-bromophenol
  • 2-halophenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • Halobenzene
  • Phenol
  • Bromobenzene
  • Piperidinone
  • Delta-lactam
  • Aryl bromide
  • Monosaccharide
  • N-acyl-amine
  • Fatty acyl
  • Piperidine
  • Aryl halide
  • Fatty amide
  • Monocyclic benzene moiety
  • Benzenoid
  • Oxazolidine
  • Tertiary carboxylic acid amide
  • 1,2-diol
  • Carboxamide group
  • Carboxylic acid ester
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Lactam
  • Lactone
  • Monocarboxylic acid or derivatives
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Alcohol
  • Carbonyl group
  • Organobromide
  • Organohalogen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Primary alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.55ALOGPS
logP1.51ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)8.12ChemAxon
pKa (Strongest Basic)-5.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count11ChemAxon
Polar Surface Area360.77 ŲChemAxon
Rotatable Bond Count19ChemAxon
Refractivity296.4 m³·mol⁻¹ChemAxon
Polarizability123.78 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA011899
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID27025535
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139586409
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References