NP-MRD: Showing NP-Card for VM54159 (NP0009345)

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Record Information

Version

2.0

Created at

2020-12-09 06:45:16 UTC

Updated at

2021-07-15 17:03:00 UTC

NP-MRD ID

NP0009345

Secondary Accession Numbers

None

Natural Product Identification

Common Name

VM54159

Provided By

NPAtlas

Description

(1'R,3'S,7'S,8R,12'S)-9-hydroxy-4,4,4',4',12',14'-hexamethyl-4H-9',14'-diazaspiro[[1,4]dioxepino[2,3-g]indole-8,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]Tetradecane]-13'-one belongs to the class of organic compounds known as azaspirodecane derivatives. These are organic compounds containing a spirodecane moiety with at least one nitrogen atom. VM54159 is found in Nocardiopsis gilva and Nocardiopsis gilva YIM 90087. Based on a literature review very few articles have been published on (1'R,3'S,7'S,8R,12'S)-9-hydroxy-4,4,4',4',12',14'-hexamethyl-4H-9',14'-diazaspiro[[1,4]dioxepino[2,3-g]indole-8,5'-tetracyclo[5.5.2.0¹,⁹.0³,⁷]Tetradecane]-13'-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106343D          

 70 76  0  0  0  0            999 V2000
   -6.5152   -0.8402    0.1837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5351   -0.0806    1.0379 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0942   -1.0552    2.1460 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9691   -1.8368    1.4796 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8565   -1.3434    0.1574 N   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5946   -1.4959   -0.4867 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1001   -0.1431   -0.9429 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7657   -0.1270   -1.5437 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1423    0.6412   -0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4498    1.9054   -1.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4081    2.7682   -1.6823 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8487    1.9988   -1.3671 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3980    0.8115   -0.8184 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4074   -0.0170   -0.3668 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7508   -1.2676    0.1876 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0802   -1.5909    0.2469 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9629    1.2500   -1.4682 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.5983    0.1246    1.4933 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7456   -1.5845    0.1465 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3827   -1.3294   -0.0293 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6828    0.8842    0.6722 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.4173    0.0051    1.8282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0394    0.9077    0.1139 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.3743    0.5828   -1.0816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3609    1.1780   -1.5424 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.0203   -1.7547   -0.2024 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7023   -0.4139    2.9674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9171   -1.6805    2.4858 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.3516   -2.8953    1.4139 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2971   -1.1538   -1.6085 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3439   -2.5654    0.6793 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.0504   -0.5162    2.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7158   -2.1188   -0.8375 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7065   -1.0541    0.2294 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6596   -2.3395    0.9297 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7365    2.4980    0.9485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9933    3.0555    0.6282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5091    2.4133    2.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7941    0.4480    2.8038 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6834   -0.0745    2.0352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8284   -1.0006    1.8130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1616    1.9045   -0.4140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6201    1.8098    1.2941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9546    0.3357    2.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0630    0.5943   -3.6729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4801    1.3987   -3.5173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5906   -0.4215   -3.7367 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
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  9 10  1  6  0  0  0
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  9 26  1  0  0  0  0
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 31  2  1  0  0  0  0
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 29  7  1  0  0  0  0
  7 34  1  6  0  0  0
 14  9  1  0  0  0  0
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 18 13  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  2 39  1  1  0  0  0
  3 40  1  0  0  0  0
  3 41  1  0  0  0  0
  4 42  1  0  0  0  0
  4 43  1  0  0  0  0
  6 44  1  0  0  0  0
  6 45  1  0  0  0  0
  8 46  1  0  0  0  0
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 12 48  1  0  0  0  0
 15 49  1  0  0  0  0
 16 50  1  0  0  0  0
 20 51  1  0  0  0  0
 21 52  1  0  0  0  0
 23 53  1  0  0  0  0
 23 54  1  0  0  0  0
 23 55  1  0  0  0  0
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 27 61  1  0  0  0  0
 28 62  1  0  0  0  0
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 28 64  1  0  0  0  0
 29 65  1  6  0  0  0
 30 66  1  0  0  0  0
 30 67  1  0  0  0  0
 35 68  1  0  0  0  0
 35 69  1  0  0  0  0
 35 70  1  0  0  0  0
M  END

     RDKit          3D

 70 76  0  0  0  0  0  0  0  0999 V2000
   -6.5152   -0.8402    0.1837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5351   -0.0806    1.0379 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0942   -1.0552    2.1460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9691   -1.8368    1.4796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8565   -1.3434    0.1574 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5946   -1.4959   -0.4867 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1001   -0.1431   -0.9429 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7657   -0.1270   -1.5437 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4081    2.7682   -1.6823 O   0  0  0  0  0  0  0  0  0  0  0  0
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    6.5983    0.1246    1.4933 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7456   -1.5845    0.1465 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3827   -1.3294   -0.0293 O   0  0  0  0  0  0  0  0  0  0  0  0
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 15 49  1  0
 16 50  1  0
 20 51  1  0
 21 52  1  0
 23 53  1  0
 23 54  1  0
 23 55  1  0
 24 56  1  0
 24 57  1  0
 24 58  1  0
 27 59  1  0
 27 60  1  0
 27 61  1  0
 28 62  1  0
 28 63  1  0
 28 64  1  0
 29 65  1  6
 30 66  1  0
 30 67  1  0
 35 68  1  0
 35 69  1  0
 35 70  1  0
M  END


  Mrv1652306242106343D          

 70 76  0  0  0  0            999 V2000
   -6.5152   -0.8402    0.1837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5351   -0.0806    1.0379 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0942   -1.0552    2.1460 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9691   -1.8368    1.4796 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8565   -1.3434    0.1574 N   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5946   -1.4959   -0.4867 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1001   -0.1431   -0.9429 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7657   -0.1270   -1.5437 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1423    0.6412   -0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4498    1.9054   -1.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4081    2.7682   -1.6823 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8487    1.9988   -1.3671 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3980    0.8115   -0.8184 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4074   -0.0170   -0.3668 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7508   -1.2676    0.1876 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0802   -1.5909    0.2469 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0965   -0.7998   -0.1876 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.5879    1.3979   -1.2374 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9629    1.2500   -1.4682 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8086    0.4161   -0.8958 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5909   -0.6093    0.1491 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5983    0.1246    1.4933 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7456   -1.5845    0.1465 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3827   -1.3294   -0.0293 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6828    0.8842    0.6722 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3372    2.3235    1.1271 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4173    0.0051    1.8282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0394    0.9077    0.1139 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.2677    0.0546    0.3027 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3743    0.5828   -1.0816 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3609    1.1780   -1.5424 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.0450    0.4795   -3.2475 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9626   -1.9185    0.5380 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3439   -2.5654    0.6793 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3881    1.9140   -2.2219 H   0  0  0  0  0  0  0  0  0  0  0  0
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    8.7065   -1.0541    0.2294 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
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  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
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 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
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  9 26  1  0  0  0  0
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 29 30  1  0  0  0  0
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 31 32  1  6  0  0  0
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 34 35  1  0  0  0  0
 31  2  1  0  0  0  0
 31  5  1  0  0  0  0
 29  7  1  0  0  0  0
  7 34  1  6  0  0  0
 14  9  1  0  0  0  0
 25 17  1  0  0  0  0
 18 13  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  2 39  1  1  0  0  0
  3 40  1  0  0  0  0
  3 41  1  0  0  0  0
  4 42  1  0  0  0  0
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  6 44  1  0  0  0  0
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  8 46  1  0  0  0  0
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 12 48  1  0  0  0  0
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 35 68  1  0  0  0  0
 35 69  1  0  0  0  0
 35 70  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0009345

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N1C(=O)[C@]2(C3=C1C1=C(OC(C([H])=C([H])O1)(C([H])([H])[H])C([H])([H])[H])C([H])=C3[H])C([H])([H])[C@@]13N(C(=O)[C@@]4(N(C([H])([H])C([H])([H])[C@]4([H])C([H])([H])[H])C1([H])[H])C([H])([H])[C@@]3([H])C2(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C28H35N3O4/c1-16-9-11-31-15-26-14-27(25(4,5)19(26)13-28(16,31)23(33)30(26)6)17-7-8-18-21(20(17)29-22(27)32)34-12-10-24(2,3)35-18/h7-8,10,12,16,19H,9,11,13-15H2,1-6H3,(H,29,32)/t16-,19-,26+,27+,28+/m0/s1

> <INCHI_KEY>
XNXXZRQPTAQILV-PYGUQFFJSA-N

> <FORMULA>
C28H35N3O4

> <MOLECULAR_WEIGHT>
477.605

> <EXACT_MASS>
477.262756619

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
53.140993151441634

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'R,3'S,7'S,8R,12'S)-4,4,4',4',12',14'-hexamethyl-9,10-dihydro-4H-9',14'-diazaspiro[[1,4]dioxepino[2,3-g]indole-8,5'-tetracyclo[5.5.2.0^{1,9}.0^{3,7}]tetradecane]-9,13'-dione

> <ALOGPS_LOGP>
3.85

> <JCHEM_LOGP>
2.8372419383333307

> <ALOGPS_LOGS>
-3.66

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.59214706356536

> <JCHEM_PKA_STRONGEST_BASIC>
8.678463717152713

> <JCHEM_POLAR_SURFACE_AREA>
71.11

> <JCHEM_REFRACTIVITY>
133.4261

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.04e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,3'S,7'S,8R,12'S)-4,4,4',4',12',14'-hexamethyl-10H-9',14'-diazaspiro[[1,4]dioxepino[2,3-g]indole-8,5'-tetracyclo[5.5.2.0^{1,9}.0^{3,7}]tetradecane]-9,13'-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 70 76  0  0  0  0  0  0  0  0999 V2000
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   -5.5351   -0.0806    1.0379 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -3.9691   -1.8368    1.4796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8565   -1.3434    0.1574 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5946   -1.4959   -0.4867 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1001   -0.1431   -0.9429 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7657   -0.1270   -1.5437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1423    0.6412   -0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4498    1.9054   -1.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8487    1.9988   -1.3671 N   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7365    2.4980    0.9485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9933    3.0555    0.6282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5091    2.4133    2.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7941    0.4480    2.8038 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6834   -0.0745    2.0352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8284   -1.0006    1.8130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1616    1.9045   -0.4140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6201    1.8098    1.2941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9546    0.3357    2.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0630    0.5943   -3.6729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4801    1.3987   -3.5173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5906   -0.4215   -3.7367 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  6
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  1
 22 24  1  0
 22 25  1  0
  9 26  1  0
 26 27  1  1
 26 28  1  0
 26 29  1  0
 29 30  1  0
 30 31  1  0
 31 32  1  6
 32 33  2  0
 32 34  1  0
 34 35  1  0
 31  2  1  0
 31  5  1  0
 29  7  1  0
  7 34  1  6
 14  9  1  0
 25 17  1  0
 18 13  1  0
  1 36  1  0
  1 37  1  0
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  2 39  1  1
  3 40  1  0
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  4 43  1  0
  6 44  1  0
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  8 46  1  0
  8 47  1  0
 12 48  1  0
 15 49  1  0
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 30 66  1  0
 30 67  1  0
 35 68  1  0
 35 69  1  0
 35 70  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -6.515  -0.840   0.184  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.535  -0.081   1.038  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.094  -1.055   2.146  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.969  -1.837   1.480  0.00  0.00           C+0
HETATM    5  N   UNK     0      -3.857  -1.343   0.157  0.00  0.00           N+0
HETATM    6  C   UNK     0      -2.595  -1.496  -0.487  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.100  -0.143  -0.943  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.766  -0.127  -1.544  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.142   0.641  -0.561  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.450   1.905  -1.255  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.408   2.768  -1.682  0.00  0.00           O+0
HETATM   12  N   UNK     0       1.849   1.999  -1.367  0.00  0.00           N+0
HETATM   13  C   UNK     0       2.398   0.812  -0.818  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.407  -0.017  -0.367  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.751  -1.268   0.188  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.080  -1.591   0.247  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.096  -0.800  -0.188  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.747   0.419  -0.728  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.588   1.398  -1.237  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.963   1.250  -1.468  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.809   0.416  -0.896  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.591  -0.609   0.149  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.598   0.125   1.493  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.746  -1.585   0.147  0.00  0.00           C+0
HETATM   25  O   UNK     0       5.383  -1.329  -0.029  0.00  0.00           O+0
HETATM   26  C   UNK     0      -0.683   0.884   0.672  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.337   2.324   1.127  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.417   0.005   1.828  0.00  0.00           C+0
HETATM   29  C   UNK     0      -2.039   0.908   0.114  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.182   0.816   1.065  0.00  0.00           C+0
HETATM   31  C   UNK     0      -4.268   0.055   0.303  0.00  0.00           C+0
HETATM   32  C   UNK     0      -4.374   0.583  -1.082  0.00  0.00           C+0
HETATM   33  O   UNK     0      -5.361   1.178  -1.542  0.00  0.00           O+0
HETATM   34  N   UNK     0      -3.176   0.320  -1.845  0.00  0.00           N+0
HETATM   35  C   UNK     0      -3.045   0.480  -3.248  0.00  0.00           C+0
HETATM   36  H   UNK     0      -6.020  -1.755  -0.202  0.00  0.00           H+0
HETATM   37  H   UNK     0      -7.330  -1.185   0.852  0.00  0.00           H+0
HETATM   38  H   UNK     0      -6.961  -0.257  -0.620  0.00  0.00           H+0
HETATM   39  H   UNK     0      -5.947   0.837   1.462  0.00  0.00           H+0
HETATM   40  H   UNK     0      -4.702  -0.414   2.967  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.917  -1.681   2.486  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.055  -1.841   2.081  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.352  -2.895   1.414  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.826  -2.041  -1.458  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.861  -2.130  -0.003  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.712   0.272  -2.563  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.297  -1.154  -1.609  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.373   2.808  -1.784  0.00  0.00           H+0
HETATM   49  H   UNK     0       0.963  -1.919   0.538  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.344  -2.565   0.679  0.00  0.00           H+0
HETATM   51  H   UNK     0       6.388   1.914  -2.222  0.00  0.00           H+0
HETATM   52  H   UNK     0       7.814   0.495  -1.245  0.00  0.00           H+0
HETATM   53  H   UNK     0       5.535   0.332   1.735  0.00  0.00           H+0
HETATM   54  H   UNK     0       7.130   1.083   1.428  0.00  0.00           H+0
HETATM   55  H   UNK     0       7.050  -0.516   2.273  0.00  0.00           H+0
HETATM   56  H   UNK     0       7.716  -2.119  -0.838  0.00  0.00           H+0
HETATM   57  H   UNK     0       8.707  -1.054   0.229  0.00  0.00           H+0
HETATM   58  H   UNK     0       7.660  -2.340   0.930  0.00  0.00           H+0
HETATM   59  H   UNK     0       0.737   2.498   0.949  0.00  0.00           H+0
HETATM   60  H   UNK     0      -0.993   3.055   0.628  0.00  0.00           H+0
HETATM   61  H   UNK     0      -0.509   2.413   2.219  0.00  0.00           H+0
HETATM   62  H   UNK     0      -0.794   0.448   2.804  0.00  0.00           H+0
HETATM   63  H   UNK     0       0.683  -0.075   2.035  0.00  0.00           H+0
HETATM   64  H   UNK     0      -0.828  -1.001   1.813  0.00  0.00           H+0
HETATM   65  H   UNK     0      -2.162   1.905  -0.414  0.00  0.00           H+0
HETATM   66  H   UNK     0      -3.620   1.810   1.294  0.00  0.00           H+0
HETATM   67  H   UNK     0      -2.955   0.336   2.018  0.00  0.00           H+0
HETATM   68  H   UNK     0      -4.063   0.594  -3.673  0.00  0.00           H+0
HETATM   69  H   UNK     0      -2.480   1.399  -3.517  0.00  0.00           H+0
HETATM   70  H   UNK     0      -2.591  -0.422  -3.737  0.00  0.00           H+0
CONECT    1    2   36   37   38                                             
CONECT    2    1    3   31   39                                             
CONECT    3    2    4   40   41                                             
CONECT    4    3    5   42   43                                             
CONECT    5    4    6   31                                                  
CONECT    6    5    7   44   45                                             
CONECT    7    6    8   29   34                                             
CONECT    8    7    9   46   47                                             
CONECT    9    8   10   26   14                                             
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   48                                                  
CONECT   13   12   14   18                                                  
CONECT   14   13   15    9                                                  
CONECT   15   14   16   49                                                  
CONECT   16   15   17   50                                                  
CONECT   17   16   18   25                                                  
CONECT   18   17   19   13                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   51                                                  
CONECT   21   20   22   52                                                  
CONECT   22   21   23   24   25                                             
CONECT   23   22   53   54   55                                             
CONECT   24   22   56   57   58                                             
CONECT   25   22   17                                                       
CONECT   26    9   27   28   29                                             
CONECT   27   26   59   60   61                                             
CONECT   28   26   62   63   64                                             
CONECT   29   26   30    7   65                                             
CONECT   30   29   31   66   67                                             
CONECT   31   30   32    2    5                                             
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35    7                                                  
CONECT   35   34   68   69   70                                             
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    2                                                            
CONECT   40    3                                                            
CONECT   41    3                                                            
CONECT   42    4                                                            
CONECT   43    4                                                            
CONECT   44    6                                                            
CONECT   45    6                                                            
CONECT   46    8                                                            
CONECT   47    8                                                            
CONECT   48   12                                                            
CONECT   49   15                                                            
CONECT   50   16                                                            
CONECT   51   20                                                            
CONECT   52   21                                                            
CONECT   53   23                                                            
CONECT   54   23                                                            
CONECT   55   23                                                            
CONECT   56   24                                                            
CONECT   57   24                                                            
CONECT   58   24                                                            
CONECT   59   27                                                            
CONECT   60   27                                                            
CONECT   61   27                                                            
CONECT   62   28                                                            
CONECT   63   28                                                            
CONECT   64   28                                                            
CONECT   65   29                                                            
CONECT   66   30                                                            
CONECT   67   30                                                            
CONECT   68   35                                                            
CONECT   69   35                                                            
CONECT   70   35                                                            
MASTER        0    0    0    0    0    0    0    0   70    0  152    0
END

RDKit          3D

70 76  0  0  0  0  0  0  0  0999 V2000
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    0.1423    0.6412   -0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
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    2.3980    0.8115   -0.8184 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4074   -0.0170   -0.3668 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  6
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  1
 22 24  1  0
 22 25  1  0
  9 26  1  0
 26 27  1  1
 26 28  1  0
 26 29  1  0
 29 30  1  0
 30 31  1  0
 31 32  1  6
 32 33  2  0
 32 34  1  0
 34 35  1  0
 31  2  1  0
 31  5  1  0
 29  7  1  0
  7 34  1  6
 14  9  1  0
 25 17  1  0
 18 13  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  1
  3 40  1  0
  3 41  1  0
  4 42  1  0
  4 43  1  0
  6 44  1  0
  6 45  1  0
  8 46  1  0
  8 47  1  0
 12 48  1  0
 15 49  1  0
 16 50  1  0
 20 51  1  0
 21 52  1  0
 23 53  1  0
 23 54  1  0
 23 55  1  0
 24 56  1  0
 24 57  1  0
 24 58  1  0
 27 59  1  0
 27 60  1  0
 27 61  1  0
 28 62  1  0
 28 63  1  0
 28 64  1  0
 29 65  1  6
 30 66  1  0
 30 67  1  0
 35 68  1  0
 35 69  1  0
 35 70  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₈H₃₅N₃O₄

Average Mass

477.6050 Da

Monoisotopic Mass

477.26276 Da

IUPAC Name

(1'R,3'S,7'S,8R,12'S)-4,4,4',4',12',14'-hexamethyl-9,10-dihydro-4H-9',14'-diazaspiro[[1,4]dioxepino[2,3-g]indole-8,5'-tetracyclo[5.5.2.0^{1,9}.0^{3,7}]tetradecane]-9,13'-dione

Traditional Name

(1'R,3'S,7'S,8R,12'S)-4,4,4',4',12',14'-hexamethyl-10H-9',14'-diazaspiro[[1,4]dioxepino[2,3-g]indole-8,5'-tetracyclo[5.5.2.0^{1,9}.0^{3,7}]tetradecane]-9,13'-dione

CAS Registry Number

Not Available

SMILES

C[C@H]1CCN2C[C@]34C[C@@]5(C(=O)NC6=C5C=CC5=C6OC=CC(C)(C)O5)C(C)(C)[C@@H]3C[C@]12C(=O)N4C

InChI Identifier

InChI=1S/C28H35N3O4/c1-16-9-11-31-15-26-14-27(25(4,5)19(26)13-28(16,31)23(33)30(26)6)17-7-8-18-21(20(17)29-22(27)32)34-12-10-24(2,3)35-18/h7-8,10,12,16,19H,9,11,13-15H2,1-6H3,(H,29,32)/t16-,19-,26+,27+,28+/m0/s1

InChI Key

XNXXZRQPTAQILV-PYGUQFFJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nocardiopsis gilva	LOTUS Database	35616633
Nocardiopsis gilva YIM 90087	NPAtlas	2061192

Species Where Detected

Species Name	Source	Reference
Aspergillus sp. IMI 337664	KNApSAcK Database	22123792
Penicillium charlesii	KNApSAcK Database	22123792
Penicillium paraherquei	KNApSAcK Database	22123792

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as azaspirodecane derivatives. These are organic compounds containing a spirodecane moiety with at least one nitrogen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Azaspirodecane derivatives

Sub Class

Not Available

Direct Parent

Azaspirodecane derivatives

Alternative Parents

Substituents

Alpha-amino acid or derivatives
Azaspirodecane
Indole or derivatives
Dihydroindole
Indolizidine
1,4-dioxepine
Alkyl aryl ether
Delta-lactam
Dioxepine
Aralkylamine
N-alkylpiperazine
N-methylpiperazine
Piperidinone
1,4-diazinane
Benzenoid
N-alkylpyrrolidine
Piperazine
Piperidine
Tertiary carboxylic acid amide
Pyrrolidine
Amino acid or derivatives
Tertiary amine
Secondary carboxylic acid amide
Lactam
Tertiary aliphatic amine
Carboxamide group
Azacycle
Ether
Oxacycle
Carboxylic acid derivative
Amine
Hydrocarbon derivative
Organic nitrogen compound
Carbonyl group
Organic oxide
Organic oxygen compound
Organopnictogen compound
Organonitrogen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.85	ALOGPS
logP	2.84	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	11.59	ChemAxon
pKa (Strongest Basic)	8.68	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	71.11 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	133.43 m³·mol⁻¹	ChemAxon
Polarizability	53.14 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA005172

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8074269

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9898611

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for VM54159 (NP0009345)

MOL for NP0009345 (VM54159)

3D MOL for NP0009345 (VM54159)

3D SDF for NP0009345 (VM54159)

3D-SDF for NP0009345 (VM54159)

PDB for NP0009345 (VM54159)

3D PDB for NP0009345 (VM54159)

SMILES for NP0009345 (VM54159)

INCHI for NP0009345 (VM54159)

Structure for NP0009345 (VM54159)

3D Structure for NP0009345 (VM54159)