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Record Information
Version2.0
Created at2020-12-09 06:33:08 UTC
Updated at2021-07-15 17:02:18 UTC
NP-MRD IDNP0009099
Secondary Accession NumbersNone
Natural Product Identification
Common NameMicroviridin L
Provided ByNPAtlasNPAtlas Logo
Description(2S)-2-({[(1S,4S,10S,13S,19R,22S,25S,29S,30S,33S,43S)-33-benzyl-2,11,21,24,31,34,41,45,47-nonahydroxy-30-({1-hydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-[(1-hydroxyethylidene)amino]-3-(4-hydroxyphenyl)propylidene]amino}ethylidene)amino]ethylidene}amino)-4-[(4-hydroxyphenyl)methyl]-22-[(1H-indol-3-yl)methyl]-29-methyl-5,16,27-trioxo-15,28-dioxa-3,6,12,20,23,32,35,40,44,46-decaazatetracyclo[17.16.10.2¹³,²⁵.0⁶,¹⁰]Heptatetraconta-2,11,20,23,31,34,40,44,46-nonaen-43-yl](hydroxy)methylidene}amino)-3-(4-hydroxyphenyl)propanoic acid belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. Microviridin L is found in Microcystis. Microviridin L was first documented in 2010 (PMID: 20363789). Based on a literature review very few articles have been published on (2S)-2-({[(1S,4S,10S,13S,19R,22S,25S,29S,30S,33S,43S)-33-benzyl-2,11,21,24,31,34,41,45,47-nonahydroxy-30-({1-hydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-[(1-hydroxyethylidene)amino]-3-(4-hydroxyphenyl)propylidene]amino}ethylidene)amino]ethylidene}amino)-4-[(4-hydroxyphenyl)methyl]-22-[(1H-indol-3-yl)methyl]-29-methyl-5,16,27-trioxo-15,28-dioxa-3,6,12,20,23,32,35,40,44,46-decaazatetracyclo[17.16.10.2¹³,²⁵.0⁶,¹⁰]Heptatetraconta-2,11,20,23,31,34,40,44,46-nonaen-43-yl](hydroxy)methylidene}amino)-3-(4-hydroxyphenyl)propanoic acid.
Structure
Thumb
Synonyms
ValueSource
(2S)-2-({[(1S,4S,10S,13S,19R,22S,25S,29S,30S,33S,43S)-33-benzyl-2,11,21,24,31,34,41,45,47-nonahydroxy-30-({1-hydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-[(1-hydroxyethylidene)amino]-3-(4-hydroxyphenyl)propylidene]amino}ethylidene)amino]ethylidene}amino)-4-[(4-hydroxyphenyl)methyl]-22-[(1H-indol-3-yl)methyl]-29-methyl-5,16,27-trioxo-15,28-dioxa-3,6,12,20,23,32,35,40,44,46-decaazatetracyclo[17.16.10.2,.0,]heptatetraconta-2,11,20,23,31,34,40,44,46-nonaen-43-yl](hydroxy)methylidene}amino)-3-(4-hydroxyphenyl)propanoateGenerator
Chemical FormulaC84H98N16O24
Average Mass1715.7960 Da
Monoisotopic Mass1714.69399 Da
IUPAC Name(2S)-2-{[(1S,4S,10S,13S,19R,22S,25S,29S,30S,33S,43S)-33-benzyl-30-(2-{2-[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanamido]acetamido}acetamido)-4-[(4-hydroxyphenyl)methyl]-22-[(1H-indol-3-yl)methyl]-29-methyl-2,5,11,16,21,24,27,31,34,41,45,47-dodecaoxo-15,28-dioxa-3,6,12,20,23,32,35,40,44,46-decaazatetracyclo[17.16.10.2^{13,25}.0^{6,10}]heptatetracontan-43-yl]formamido}-3-(4-hydroxyphenyl)propanoic acid
Traditional Name(2S)-2-{[(1S,4S,10S,13S,19R,22S,25S,29S,30S,33S,43S)-33-benzyl-30-(2-{2-[(2S)-2-acetamido-3-(4-hydroxyphenyl)propanamido]acetamido}acetamido)-4-[(4-hydroxyphenyl)methyl]-22-(1H-indol-3-ylmethyl)-29-methyl-2,5,11,16,21,24,27,31,34,41,45,47-dodecaoxo-15,28-dioxa-3,6,12,20,23,32,35,40,44,46-decaazatetracyclo[17.16.10.2^{13,25}.0^{6,10}]heptatetracontan-43-yl]formamido}-3-(4-hydroxyphenyl)propanoic acid
CAS Registry NumberNot Available
SMILES
C[C@@H]1OC(=O)C[C@@H]2NC(=O)[C@@H]3COC(=O)CC[C@@H](NC(=O)[C@H](CC4=CNC5=CC=CC=C45)NC2=O)C(=O)N[C@@H](CC(=O)NCCCC[C@H](NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H]1NC(=O)CNC(=O)CNC(=O)[C@H](CC1=CC=C(O)C=C1)NC(C)=O)C(=O)N[C@@H](CC1=CC=C(O)C=C1)C(=O)N1CCC[C@H]1C(=O)N3)C(=O)N[C@@H](CC1=CC=C(O)C=C1)C(O)=O
InChI Identifier
InChI=1S/C84H98N16O24/c1-44-72(99-69(107)42-87-68(106)41-88-73(110)58(89-45(2)101)34-47-17-23-51(102)24-18-47)82(119)95-59(33-46-11-4-3-5-12-46)76(113)90-56-15-8-9-31-85-67(105)38-61(78(115)97-64(84(121)122)36-49-21-27-53(104)28-22-49)93-75(112)57-29-30-70(108)123-43-65(98-81(118)66-16-10-32-100(66)83(120)63(96-74(56)111)35-48-19-25-52(103)26-20-48)80(117)94-62(39-71(109)124-44)79(116)92-60(77(114)91-57)37-50-40-86-55-14-7-6-13-54(50)55/h3-7,11-14,17-28,40,44,56-66,72,86,102-104H,8-10,15-16,29-39,41-43H2,1-2H3,(H,85,105)(H,87,106)(H,88,110)(H,89,101)(H,90,113)(H,91,114)(H,92,116)(H,93,112)(H,94,117)(H,95,119)(H,96,111)(H,97,115)(H,98,118)(H,99,107)(H,121,122)/t44-,56-,57+,58-,59-,60-,61-,62-,63-,64-,65-,66-,72-/m0/s1
InChI KeyWLHHUMSPNLZREI-WLNUAIIISA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
MicrocystisNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassHybrid peptides
Direct ParentHybrid peptides
Alternative Parents
Substituents
  • Cyclic hybrid peptide
  • Tyrosine or derivatives
  • Phenylalanine or derivatives
  • N-acyl-alpha amino acid or derivatives
  • N-acyl-alpha-amino acid
  • Macrolide
  • 3-phenylpropanoic-acid
  • 3-alkylindole
  • Amphetamine or derivatives
  • Alpha-amino acid or derivatives
  • Tricarboxylic acid or derivatives
  • Indole or derivatives
  • Indole
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Benzenoid
  • Substituted pyrrole
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Cyclic carboximidic acid
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Pyrrole
  • Lactone
  • Lactam
  • Carboxylic acid ester
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Polyol
  • Carboxylic acid
  • Carboxylic acid derivative
  • Carboximidic acid derivative
  • Carboximidic acid
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.43ALOGPS
logP-3.2ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)3.56ChemAxon
pKa (Strongest Basic)-6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count19ChemAxon
Polar Surface Area594.09 ŲChemAxon
Rotatable Bond Count20ChemAxon
Refractivity431.13 m³·mol⁻¹ChemAxon
Polarizability174.9 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA027406
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146683734
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ziemert N, Ishida K, Weiz A, Hertweck C, Dittmann E: Exploiting the natural diversity of microviridin gene clusters for discovery of novel tricyclic depsipeptides. Appl Environ Microbiol. 2010 Jun;76(11):3568-74. doi: 10.1128/AEM.02858-09. Epub 2010 Apr 2. [PubMed:20363789 ]